Array 1 8985-10294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENHQ010000034.1 Escherichia coli strain ALPHECOLI2U NODE_35_length_129110_cov_52.732555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8985 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 9046 29 100.0 32 ............................. CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC 9107 29 100.0 32 ............................. GCAGGCACGGGCAATATCAGACTCGGTCAAAG 9168 29 100.0 32 ............................. CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA 9229 29 100.0 32 ............................. TCGGTAAACGACTGGGTGCATAAATACAAGGG 9290 29 100.0 32 ............................. GGTGGCGAGCTGACGGAGTTGGTCTACCGGTC 9351 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 9412 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 9473 29 100.0 32 ............................. CTTTTCATCAATCGGAGCATATTTGCGATCGA 9534 29 100.0 32 ............................. CGGACGGTGGGAATATAGAAAATCCGTCCACC 9595 29 100.0 32 ............................. CAATAACGCAGCATCCAGGAAGCTGTTTCCGC 9656 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 9717 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT 9778 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 9839 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA 9900 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 9961 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 10022 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 10083 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 10144 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 10205 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 10266 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENHQ010000139.1 Escherichia coli strain ALPHECOLI2U NODE_152_length_564_cov_38.895390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 93.1 32 .........A..T................ TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 110 29 93.1 32 .........A..T................ AATGATTGATATAAATCTGTGTACGGTGTCCG 171 29 100.0 32 ............................. CTAGGATAAATTAAAAGACAAAATTGCAGCAA 232 29 96.6 32 ............G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 293 29 100.0 32 ............................. ATCGATATGTACGTTAGCGAGGGGATCACGCA 354 29 93.1 0 ...........A................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGGCAATTAATTTAGTTCCAGATGCTGCGAAAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //