Array 1 2619092-2619913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2619092 29 100.0 32 ............................. GTTCACGGCCAGACTCCGGTGGTGAGGGCGAC 2619153 29 100.0 32 ............................. TCGGCCGCGTGCGCGACCGCCGACCCGGAGGC 2619214 29 100.0 32 ............................. GACCAGATCACCGCCGCCGACGACTTGGCGCA 2619275 29 100.0 32 ............................. TCCACCGGCATGGCCCGCGCCGAGCAGCGCAC 2619336 29 100.0 32 ............................. GTGGAGCGCCTGATACTTCGCCTTGTCGCCAC 2619397 29 100.0 32 ............................. TTGATCGCCTGCTGCTCGACGTTGGCGTAGGT 2619458 29 100.0 32 ............................. ATGCTCCACCCCCTTCCTGGCGCCTCGGCCCG 2619519 29 100.0 32 ............................. CAGCTCCACGCTGGGGATGTCCCACTGCATCG 2619580 29 96.6 32 ............................A CGGCCTGGTGGCGTTGCTCAGCGGCCGGCGCC 2619641 29 100.0 32 ............................. AGGCCGAGTCGACGCAGCAGGCCGCTGGGGAG 2619702 29 100.0 32 ............................. GGAGACGGTAGGGGAGAGGTCAGGGGAGACGG 2619763 29 100.0 32 ............................. CTCAGGAACCCTGCGGAAGGCCGCGTGCCGGC 2619824 29 96.6 32 ....................T........ AGGCCGCCGCCAGCGACCCGGCGGCGACGTGG 2619885 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGCTCTCCGCGCGAGCGGAGGTGTTCCG # Left flank : ACGTCGCCACTCTGAGTCGCTCTTCAGTCACGTGGGTATCGAAGCAAGCGCCACTGACAGTCGGACCCTCCGAAGCGGGTTCCGGACGCCGACGGGCGCCCGGCAGCGACCAACTTCCGGCCATACGTGGAAAGACCGCCATGCGGGCATTACCGCCTGAATGATCATGCACACTCGCCGTAACCAGCGGTGAAGCGCCCGCAGCGCCATCAACGAGCGCTACGGACGATCTTCACCGCCGTCGCTTTCGAGACAAACGCCAGGGAAAGTCGCCTCCTGCCGCCGCCGTCCGGAAAACGCCTCTATCGCACGGTCGTTGCTCTATAGCCCCTGTGCGCGACGCGCCTCGCCGACAACGCCGGCGTCCACACTTCGGAGCCCGGCACGGCGCAGCGGGCGGCCCTAGACTTGCGGGCATGGAAAACAGGACCGGCCTGGGGCCTGCGCTCGCCAATGGCAAAGGAATGGCAAACCGCCCCTAACGCCACAGGTCAAAAAGG # Right flank : GACGATCAGCAGTTAGCTTTGTCCACGAGAACGGACAGCGGATGTTCACCACTTCGGGAGGCGCGAGCGCTTCGAACGGTCAGTAGCCTGGGGCATGCCGGAGGCGCCGCTTCTCTCTGCTCACCTTGGAAACGCGGAACTGTGACCGACGGCGGCAAGAAGCTCGAAGGGGAGTTCTCGGTCCCCCTGGCCGATAGTGAGGCCGAGCCAACGGCCAGTAGACGGCACCCGCCAGACCTGCATGTCCACGGCGACGTTGCACAAGTAGCTCAACGGCTCGGGCGCCTCGTTGTCGGGGTAGCCCGGGTCGTCAAGCCCGAGATAGGGCCGCAAGTCGACAGTCTCTGGGGCACCCCAGCGTCCAGTGAGAACGACAGCCAGCGCGGCAAGGTCGGCCGCCAGCTCCTCTTCGGCCGCGGCGACGATCTCGGTGCTCCGGTCTTCCCAGAAGTCCTGGCTCTCACGGAGCACCGCCAGGTGGAAGCCGGGCCCGCCCCACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2634064-2634336 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2634064 29 100.0 32 ............................. GGGTAGCCGTGGCTCCCCCTAGAGGTAGCCGT 2634125 29 100.0 32 ............................. GGACCGATCGCAACGAGTGGAGCCTGGAAGAG 2634186 29 100.0 32 ............................. AATAGGAGCAGCCCCATGGCGCTGTTGACCCG 2634247 29 96.6 32 .................A........... GAGTCCTGCGTGCACTCCGGCAGGTGCTTGGT 2634308 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCCACCCCGGCGACCCCAACCCACCAGCCGGCGCGCTCCTCTTCTACGCCACCGACGACACCACCGGCCACGTCGCCCTCCACCTCGGCAACGGCCAGGTCGCCACCAACGACATCGTCGCCCCAGGCCGCATCGACATCGTCCCCCTGGACCACCTCACCCACGGCCCCTGGCACCTCACCTACCGGGGCTGGACCCCACCCGACTTCCCCTACGGAGTGGCGGGCATCAGCAGGGTGGGGTGAACCGGAGCAACCCCCACAGCGACCGAACGCCGGCGCATCAGACAGCCCCGTCCACCCGTGGGATCCAGCCAGGGCGACAAGATGCAACTCCCGCACCCCACGTCGGCAGTGACAGATAGCCTGAAGACCTGCCCCAGCCCAACGACGAACAGAGACACCGCAATGCCTGACCAACCATCGTGCGCCTACACAGCTGCACCCGACGCACTCGGTAATGAAATGGCAAAGCCCTCCTAACGCCGCAGGTCAAAAAGT # Right flank : GCAGCCTCACGACTCGCCCGCCGGCCCTACGATCTGCGGCACGCGGGTGTCTCGTTCTGGCTCAGCTCCGGCGTGGACCCCGCCGAGTGCGCTCGTCGCGCCGGACACAGCCTCGCCGTCCTCTTCCGCGTCTACGCCAAGGTCCTCACCCGGAGCGAGGAACGCTCCAACCGCCCCATCGACACGGCGATGCGGGAGTGGAACGACTCAACGCGGTAGGGCCGCAGCCGAAAGTCCTGGGGGACACGGACTGGGCCGCCAGGACACCCCGGCATCAGAGTGAGATGAAAGCCGCATTTCGATTCACGTTCGAGACTCGCGAATCGGGGCAGCGAAAAGACCCTCCTCCCAGCCGTAATCGCTGGTCAGAGGGCCTTCGCTGAGCTGTGGCGGCGCCAGGATTCGAACCTGGGAAGGCTGAGCCGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGCACACCGCCTTGCTGCGGGTAAACCATACCCGATGCGTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3793524-3793880 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3793524 29 100.0 34 ............................. CCGGCCACCCGCACTTCGCCCCCGCCAAGCCCGC 3793587 29 100.0 38 ............................. ACGGCGGACGGCCTGTTGATCCCGGACATCGTGGTGGC 3793654 29 100.0 35 ............................. CGGGGCGCCGAGGTAGCCGCCGCACCGGATGCAGT 3793718 29 100.0 37 ............................. CCGAGATGTCGATGCCCAAGTCCCTTGAAAGGTACCG 3793784 29 100.0 39 ............................. CGGACCAGGCGGGGAGTTACCTCGCTGAGCGCCTCGCTG 3793852 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 99.4 37 GTTGCGAACCCTCCGGGGTTGATGAGGAC # Left flank : GTGGTCGTCGAGTGCGAGCACATGTGCATGACCATGCGCGGGGTGCGCAAGCCGGGCGCCAAGACGACCACATCCGCGGTCCGCGGCCAACTCCGCGACCCGGCCACCCGCGCCGAGGCGATGAGCCTGATCCTCGCCCGCTAGGCCGCCGAGCGGCTGTCCTGAGCGACGGCGCTGCGCGCGGCCTGGCCGGGCCCTGCGGGCCAGGGGCCGCAGGCCCCGCTCCCCGGTGCTGGTGCGCGGTTGAGCGTCGGGATGCGGGTGCCGCGTGGCAGCCGTGCCCTGCGGGCGGCGTCTTGCGCTGGCGCGCGGCCCTCCACGGCCGGCCGGTCGTGGTCGGCCAGCTGATCCGCTCGGGCAGGTGGACGAAGGGATCCAGATGTGCGAGTCCGAGGCCGTGGGGCGGCTGTGGCAACCCGTGGAGGTCCTTGAGGAGCGAGGCCAACTCCGCCCCGGTGCCCGGCCGGTGGGGTGGTAGCTCTTCCCATTGGACAACGCCG # Right flank : AACGAGTGTAAAGCCGCTGGCTGAAGGTCAGATCGGGGTGCCGTGGGTGGGTGAAAGTGCAGCACTCTGGCGGTAGTGCAACGTCGCAGGTCAGAAAGATGGAAGGGGCGTTCCGCAGGAGGCGCGGGAGCGGCCCGTGGAGTCTTGGGCTGATGGAGCCGGCCTGGCTTCGGCACAGGAGGCACACCTGAAATGCTGGCAGGTCGATTATGAGAGCTTGGACGCGAGGGTAGCCCAGAGTGCTCGCTGGCTGGTGTCGTGGCGGGGCGTTGGGTCTTGTCCGACGCGGCCCATGCGAACGAGGGTGTGTCCGATCTGCTCGGTTGCGCGTGGGCAGGACGGACCAGGCACGGGGAGCCGGCGTCCCTCCGGGCGGACCCGGAGGGTGGTGTGGTGCCGTCGTGGTGTGGGGTGGGTTCGTGGTTTAGCGGGGGGTGTCGTTGTCGCCGACGTCCGTGAGGAACGCCTGCCAGGACGCCGATCCGAAGGTCAGGATCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCCGGGGTTGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 4721667-4721377 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 4721666 27 96.3 39 .........C................. CCCGGCGCTACCCGCCGACGTGGTCCGTCAGCCTCGAGC 4721600 27 100.0 39 ........................... CGCTGGCGGCCCCGCTGCTGTGGATCGCCGCCGGCATGT 4721534 27 100.0 40 ........................... ATACGGTGAGACAGGCAGTCACAGGGAGGGCATTCATGGT 4721467 27 85.2 38 .........C.G............GG. GCGCCCATCAGGCGGCCGGCGAGCGGCACGTCGCCGGT 4721402 26 85.2 0 ........G-...A.......G..... | ========== ====== ====== ====== =========================== ======================================== ================== 5 27 93.3 39 CCTCATCAATCCCGGAGGGTTCGCAAC # Left flank : AGGGCATGGCGGCCCCGCTGATCCGACAACCATGCCGAGCGGACGGTCGCCCACGGGACCGGCCGGATGACAGAGGCCGTTCCGGTCATCACCCGTGCGCGCGGCTGGTTGGCCTTGATCCGCCGAAAGGGGCACGAGATTCCAGCGGCTCCAGACGCGCAGAGGGAGCGGGCTCCAGGAGTGGGCGCGATAGCGAAGGACCTATACGCCGACAGAGGCGGACACCTCCAACCGGACTGCGGCCGGGCCCCCGCGTGCACAGGGATCCCACCAAGGCTGTGGCTCTACCATCTGCTGGTCAGCATTCCAAGTGCGGCCCCTGCTACCAGAGCTAGGCTGGCTCCATCAGCCCAACACCCCACGGACCACTCCCCCAACCACCTGCGCGGCGCCCCACTCACCCCTCTGACCTGCAACGTTGCACTACCGTCAGACCGCTGCACTTTCACCCCCACGCGACACCCAGACCCGCTTCCCAACCAGCGGCTTTACACTCGGGT # Right flank : GTGACGGGTTCATCGCTGGGCGGCGGGCCTGAAGGTGAGGTGCCGGAACGGGCATGAGATGCGGCCTTACACCGCCCTCCCACCCCGGCTTCGACGGCTCCGGCCTCACCCAAGCCGCCTACACCGCCGCCTACCAACACGCCGCCAGCCCCCAACTCCCGCCAGCCCCCGCATGCCCGGCGACCTCCTCTTCTACGGCACCCCCCACAACATCCACCACGTCGGCATCCGCACCGGCAACGGCCACATGATCAGCGCCCCAAGCCCGGCGAACTCGTCCGCGAAGAATGCCACCGCTACCCAGGCGACGACTACCTCGGCGCCACCAGACCCCGGGCACACCCCTGTATATCTCCGTAAGGGGATTTCGTTTTCAGTGTCCTGTCATCAACTGGTCCCCCTGGGTCCGGGATTCACGAGCATGGCTGTTTTCCGAGAGCGAACAACGCTTCCCTCGGTTCGATTTCAGTTGGTATCGCGCTCGTGTCAACGGCCGCCGA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCATCAATCCCGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 4733017-4732454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4733016 30 100.0 34 .............................. AGGACCGCCTGCCGCTGCTCAACCAGCTGCGCAG 4732952 30 100.0 36 .............................. GCCGGGTCACAAGCCAGGCGGTGAAGTGCCGCTCGC 4732886 30 100.0 37 .............................. ACGTCTGGCGGGCCGGACTGAGAGGGGCGTTGTTCTG 4732819 30 100.0 37 .............................. CCCGGGTCTCCGTCCCCACCCTTGGCGCGCTTCTTGC 4732752 30 100.0 36 .............................. TGGTGTCGGGCAGGGCCGGTGTTCCGTCATGGACTG 4732686 30 100.0 38 .............................. ATCCGCGACACCGGCCAGCAGCTGGCCCGTGACAACGC 4732618 30 100.0 37 .............................. CCGTTAAGGGGAGGGGTAATGCCCGGCTTAGCCCCCG 4732551 30 90.0 38 .G...C..........G............. GCGAGGGGAAGGCCGTAGCGGGCCATACGGAGGGGCAG 4732483 30 96.7 0 ................G............. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 37 GTTCCTCATCAACCCCAGAGGGTTCGCAAC # Left flank : GACGACCGAACGGCCTCAACGGAACACCCGGCTGGCCGGTGACGTCGCGCACCGCGACCTCCCCACCTACCGCCCCCGCCGACCCGACAGCCCCCGGCGCGCCACAGCGGGAGGTGGACACCCCGCGATGGCCGGCGCCAGACACAGCCGTGGGGAGCACCGCCGAGGGACATCGACGCGACGACGCGGAGGCTCCGCCCAGTACGCGGACGCCAAGACCGAACCACTCCCCCTCCACCCCCACCCCAGCCCCCTCGGACCACACCCACAACCGAGCACTCCCAGCACTCCCAGACAGCCTGTCAGCATCCCAGGTGCGGCCCTGCTACCAGAGCTAGGCTGACTCCATCAACCCAACACCCCACGGACCACTCCCCCACCACCTACACGGCGCCCCACTCACCCCTCTGACCTGCAACGTTGCACTACCGTCAGACCGCTCCACTTTCACCCCCACGCGACACCCAGCCCCACCCCCCAACCAGCGGCTTTACACTCGG # Right flank : CGCACCAGCTCCACCGCGGCGGGCAGATCAGCCAGTCCCCATCACCCCCCGAGGTTGACACACCTCCCCCGGCCCGTCCCGCAGTTGATGCCGCTCCTTGTCACCGTCGGCTAGAGGACGTGTGCAGCTACAGGATGTCGCCTGGGCCGCCGAGGTTTTGGCCGAGGGTGGTGGATTGGACGGATTCTGGGGAGCGGGTGGTGTAGGCGACGATGCTGTCGTGTTCGGGGTCGATGGTGGCGTTGAGGGTGGCCATCAGGGCGCGGTACTGGGCGGTGGAGAGTTCGCCTTGGAAGTGGCTGCGTTGGGTCCAGTGGAGGTACTTGCGGCAGGCCTTCAATACTTTGGGGTTGCGTTCGACTGCGGTGTCGTAGACGAGGATGACGTACATGGCGGCGCGCTCACCACCAGGGCCGGAACGGCTTGTAGGGCTTGTCTTCGAGGCATAGGCGGACGATTTTGAGGGCTTCGAGGTGGATGAGTTCCTCGTAGCTGACTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCAACCCCAGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 4734170-4734866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4734170 37 100.0 39 ..................................... TCGGCCAACGATCTGATGCAGCGTCGAGCGCGAGGCGCG 4734246 37 100.0 36 ..................................... CATGAGGGCGGTGACGGCCATGGTGTCGCCGGTGTC 4734319 37 100.0 35 ..................................... ACGGTTCCGGTGGTGCCGTCGCGGTAGGCGATACC 4734391 37 100.0 36 ..................................... TGCCGAGGAGGCGCCGGAGGAGGCCAGGGCCTCGTT 4734464 37 100.0 35 ..................................... ACCAGGCGGTGCGGCTGGACGGTGCTGGGCATGTC 4734536 37 100.0 35 ..................................... TCGATCAGGTTGGGGTGCCGGATGCCGTCCCGGTC 4734608 37 100.0 38 ..................................... ACGACGGTGTTTGCTCAGTGCCGGATGATCACCCGGGA 4734683 37 94.6 37 .................G....G.............. GCCAGGTCCCGGCGCAGACGGTCCACCATCGACCGGC 4734757 36 89.2 37 ......-...........GA......C.......... TCGTTGCCGCTGATGTCGTCGGCCTCGGTGTGTACCC 4734830 37 81.1 0 ....T.....T.....TG..AA............C.. | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 96.5 37 GTTGCACCCCCGCCCACCCGGGCGGCTCCATTGAAGG # Left flank : CACAAAACGGACACAACCGGCGCGAGGGGAGTGGAGAGGGGCGGGGAGCACCCCCGAGTGCCCGAGCCCGAGCCGCCTGCGGCTCGGGGCGAGCGCCCCCGCTCACCTGCGGGAACGCGCATAGACGGCGGCTCAAAAGAAAGCGCGCCCCCGGCAGGACTCGAACCTGCGGCCAAGTGCTTAGAAGGCACCCGGGGTTGGGAGGCGAACGGCGCACTGACCTGCGCTTTGGCGGCCAGTGGCCTTGCTTGGCAGGGGATTTCGACGCACATTTGACGCGGGTCGCTGCTGACATGTGGCTGAACCATCTGCCTCCCCGCTCACGCCGAAGGTATCTTCGGGGGCGCACCGCCTGCCGTCCATGAACCCAGCTTCGGAACCGGAAGCATGCCAGGAATTCCCCGATCGCACCGAAGTAGAATGTCCGAAGTCTCCGCAATCAAGCACTCCGCCCGACGGCGTCACCCACCACGGCACGTAATCACCCCAGTTCGCAGGCC # Right flank : GGGGGTGTCGCGGGGCGAGCCGCCGACGTTGTGGCGGTTGAATCGCTTCCGGAGCGGTGGCTGCCCTCCTCTCGCGCCATCGGTGCCATGGACGTATCCGCTGGTGGATGCCCTGTGCCCGCCGTCTGACGTTCCGTTGTCAGTGGTGGGTGGCAGGATGCTGCGCGTACTGGTTCCGTCACCGTGTGGTGGGGAGTGGGCTGTGGCGCGCGAGTTGGGTGTGTCGTTCGGGGCGTTTATGCGTCGGGCGACGGGGCGTGAGGCGTTTCCGTTTCAGGAGCGGCTTGCGGTGGAGGGGTTGCCGGAGTTGTTGCGGGTGCCGCCTGGGTCGGGGAAGACGGAGGCGGCGGTGCTGCCGTGGCTGTGGCGGTTGTTGGAGCATCCGGACGCGGGGGTGCGGGCGGGGACGCCTGGGCGGTTGGTGTTCGTGTTGCCGATGCGGACGTTGGTGGAGCAGGTCGTCGACAAGGTGACGGCCTGGGTGGGGGAGTTGGGGCTGG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCCCGCCCACCCGGGCGGCTCCATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 7 4742442-4742917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4742442 37 100.0 36 ..................................... GCCTGCTCTGCTGGCGCGCGGGTCACGGGACCGCCC 4742515 37 100.0 36 ..................................... TTGCTGACGCCGAGCCGGTCGGCGATCTCGCCGATG 4742588 37 97.3 38 .............A....................... GATTGGGTGACGGAGGACATCTGGACGGCGAATGCGAC 4742663 37 91.9 35 ........C....C....G.................. TCCTCTGCCAACTCCCGCACGGCCGCGTAGGAGCC 4742735 37 97.3 37 .............C....................... GGGTGGATCTTGACCCCGCCCTCGGCGTCGAAGTAAT 4742809 37 91.9 34 ........C....C....G.................. TGCTCGTCGTTCGGGAGAGCCAGCGGCCCTCGAG 4742880 37 83.8 0 .........AA..C.T.G....T.............. | C [4742915] ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 94.6 36 CCAGCACCACCGCGCCGACGGGCGGCCCCATTGAAGG # Left flank : CAGCCAAAGACGTCCTCCCCGCCCACTGGACCACCCCAGCCACCCGGTGGACCACCATCACCCCCTTCATCCCCCCACGCCACCGCAAGAAGAACCAAGAACTCCACACCTACCTCACCGCCGAAATCACCCGCGAACTCGGCCACCGCAACCTCCCCACGCCCACCGACATCACCATCACCCCCGGCCCCTGGTCCCGCCACACCCGACATCGCCGCTCCAAAAAGGAAACCCTCGCCAGTGCCCGCCCCGCCTACGGCCTCCAACTCACCTTCCCCCACGACATCCCCGGCCCCCTCACCCTCGGCCGCCACTCCCACTTCGGCCTCGGCACCTTCAACCCCACCCAATGACCCCAACCCCTGAAACGACTTCGGAACCCCAAGCACACCCGGAAACCCCGGATCGCACCGAAGAAAAATGTCTCATAAACCCTGTTATGCGCCTCCCGCTCGCACCTCCTCCAGCACCCCACAACCACAAACCACCAGTTCACAAGC # Right flank : GGGTGTCAGGCTTTCGCCCTGCCTGCTGCTGTCCAGGACTGCACTGTGGCCCAACTGGTGGCTCGATTGAAAGAGCGCCTGCGGCTTCTGCATCTTCCGTCAAGCGGCGCTGTCAATTCCGCTCTGGGCGCGGTGGCATTGCCTTTCGGGCTGAACCACGACGTCCGCGAGTGCGGTGGTGGCTGTGTGGCGGTCGCAGTCCAGGGCGGGCGTGTCTGAGTACCGGGGACATCTGCCGTACTGCGGCGATCTCGCCCCGGCCTACGTAGACCGAGGTGCCACCAACGGGCGCTGTGCGGCGGGTGATGTCGTCGAGGTTGGCCAGCGCGAAGACACCTAACGCGCAGGCGTCGCCATGAACTGCCGACGTCGTAAGCCCCGCTCTCCTCATTGGATCACCGCAGCCACCGTTCTCGCCGGCCATCGGCGGATCAGTGTCCCAGACGGGGGTGTGCGGACCCGATGAAGCGGTGACTGCCTACCAGCCCGCCCTGCTATAT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACCACCGCGCCGACGGGCGGCCCCATTGAAGG # Alternate repeat : CCAGCACCCCCGCCCCGAGGGGCGGCCCCATTGAAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 4753970-4754396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 4753970 29 100.0 37 ............................. CCCACCCGGCCCCGACCCACTGCCCTGACCGCACGGC 4754036 29 100.0 38 ............................. CGGGCCATGCACGGCAGCCACCCCAGCCGCACCGCACC 4754103 29 96.6 40 .............G............... CTCCGCCCCCGTGGAGCCCACCGCCCACCCCGATCGTCAT 4754172 29 96.6 37 ............................T CGGCGGCGCGGTCTGCGGCCGACTACGTCGCGTCGGC 4754238 29 100.0 37 ............................. GTGGGGAACAGCGTGCGGTAGCCGGGCAGGTCTCCCT 4754304 29 96.6 35 .......G..................... CTGGAGCAGCGGCTGATGGCGATCCAGGCGTCGGC 4754368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 7 29 98.5 38 GTTGCGAACCCTCCGGGGTTGATGAGGAC # Left flank : AGATGCAGGCGGCGCGGGCCTGTCGCATCGTGGCGGCCGGGTCCCCGAGGTGGTGACTGCTCTTGGCCGGCATGCCAGCCGTCATCGCGGCCACCAGGTATAGGTCACGGGCCTGCGTCGGCTTCGCTTTTCCGCTCTCCAACAAGCGGAACGCCAAGTCCTGCGCCTCGACGAGATCGCTGAGGATCGTGTTCAGGGGGACGAGGGGGTAGGACTCGGCCAGGCGGTGTACCTCGTCCGTGAGGGAGCCCATTGTCTCCTCACCGAGTTGAGCACTCTCGGCGGTGATTGCCCAGCGCAGCGCGCGATTCGCGGCCATGGCTGCCATCCCTCTCATGTCGAGCAGCGTCTCCCCGTGAGGGAGACGGGTGTCTGACATCGCGACTTCCGAGGGCACACTCGTGCCGGATCGGGCACCTGCTAACCCATCGGGCACTGGCCCCAGGAGGTCTTCGATCCGGAGGGCAAACATGTGCTCCAGCACCCGGCGGGCATCCCGA # Right flank : CCCGAGTGTAAAGCCGCTGGTTGAAGGTCAGATCAGGGTGCCGTGGGTGGGTGAAAGTGCAGCACTCTGGTGGTAGTGCAACGTCGCAGGTCAGAAAGATGGAAGGGGCGTTGCGCAGGAGGCGCGGGAGCGGCCCGTGGAGTCTTGGGCTGATGGAGCCGGCCTGGCTTCGGCACAGGAGGCACACCTGAAATGCTGGCAGGTTAATTATGAGAGCTTGGACGTGAGGGTAGCCGAGAGTGCTTGCTGGCTGGTGTCGTGGCGGGGGGCCACTAAGGACCTTGAATTCCCGCCCACCATGCAGAGGGCCTCCCAACACGAGGCGACGCGCGCCTGCTCTCAGGCGACCGATGTCCACACCCAAGGGCGGGGCCCGGCCCTGCCCTGGACGCAGGAGAGGCGGTGGTGGGCTTCGGGTATGGCGGCGGGGTTGTCGGTGGCTGTCTGGAGGGCGAAGGTGAGCGCGCGGAGTTCGCGGAGGGTTCGGAGGGTGGGGTAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCCGGGGTTGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 9 4794023-4793324 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 4794022 29 100.0 38 ............................. TTGTCCTGAGCAGCCTGGACGAGTTCCACGCACGCCGC 4793955 29 100.0 36 ............................. AACAGGTTCCACCGGGTGGCGAACCCGACCACGTTC 4793890 29 100.0 40 ............................. CCGATCCCGAGGGCGCCCAGCGCGGCGGCGAGCTGGTCCG 4793821 29 100.0 40 ............................. GCGCATCGTCATCGGATCGCCCTCCTGGTCGGTAGGTCGG 4793752 29 100.0 40 ............................. CGCTCCAGCGCGAGGTCTACGAGCAAGCCCCGCTGGACCG 4793683 29 100.0 36 ............................. GGGGCGGTCTGTTCAAGGCGGGGGCTGGTTTCAAGC 4793618 29 96.6 37 ........................C.... CTGTAGGTCATCTCCAGACGGGCCAGGATGTCCGGCC 4793552 29 100.0 38 ............................. GCGCGCCGATGGCGGTCGCCTGGTCCAGCCAGGCCGAC 4793485 29 96.6 39 ..............T.............. GAGATCGGCCGGCAGACGCTGCTGCGGCTCCGCTGGGGG 4793417 29 75.9 36 T....G....C.T.T..G.........G. GCGCCCGTCAGGCAGCGGGCGGACGGCACGTCGCCG 4793352 29 82.8 0 ....C.....G....A.....C.G..... | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 95.6 38 GTCCTCATCAACCCCGGAGGGTTCGCAAC # Left flank : AATCACAGACCCGCCGCGCAGGCCCAGGACGAGTTCACTCTTCCGTGCCCATCTCCCCACCCACCGGACGGACCGAACGACCTCAACCGGCCTCACCGGAACACCCGACTGGCCGGCACTCCCGCACCCACCGCCCCACCGCAGGAGGAAGAGAACCTGCGATGGCCGATGCCGGACGCGGCCGTGGGAAGTACCGCCGAGGGACATCGACGCGACGACGCGGAGGCTCCGCCCCCTACGTGGACGCCAAGACCGAACCACTCCCCCTCCACACCCACGACCGTGCACTCCCAGACAACCTGTCACCACTCCAGGCGCGGCCCCTGCTACCAGAGCTAGGCTGACTCCATCAACCCAACACCCCACGGACTACTCCCGCACCTCCCGCGCGGCGCCCCACTCACCCCCTGACCTGCGACGTTGCACTACCGTCAGACCGCTGCACTTGCACCCCCACACGGCACCCAAACCCGCCCCCCAACCAGCGGCTTTACACTCGG # Right flank : GTAACGGGTTCGTTGCTGGGCGGTGGGCGTGGAGGTGACGCGCCGGGACAGGCATGAGATGTTGCCTTGGGGATGCTCATGGAACTCGAACGTGCAGGTCAGCACCCTGTTCGCCACCCGGCGACCTCAGACGCCTGCTGCGCACCGGGGCCGTAGGTTCGCGTTCTACCGGGGGCGCGTCTTCTTCCCTACCCGTTGCCTATCCTCGTTTCCGCAGGTCAGCTTGGGTATTCGCCACGAGACGCAGATGGCGGGGGCGGGGGTACTCGGCGACGCTCACGTTGGTTGCGTGCGCATTGTCGTGAAGGGGCTCGGATGCCCACGGTGCATGCACAGAAGAACCCACCAGCAGATCTCCCGTGAGGTCCTCTTCGGCCGGATGGCGCGGGGTGAGGTCCTGGGACTGTTCGATCCGTTTGAGGAGTTCGGTTTGCTGACCGGTCACGCAGTGGGCGTAGGTGGACAGTAGGACGGGGACGCTGTTGCCGGCCCAGGCAGCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAACCCCGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 10 5259709-5260361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5259709 36 73.0 37 .........AC........-.........TGGCGGT. GTTTTCGTACGCCTCCGTCAGGCTGTAGGTGTTGGGG 5259782 28 67.6 0 .........AC........G........--------- - Deletion [5259809] 5259810 37 100.0 36 ..................................... GACCGGGACACCGGCGAGGTGATCGCCGGCCCGCCG 5259883 37 100.0 37 ..................................... TACGAAGGAGAAGAACAAGCAAGCAAGCGCGCCGGAC 5259957 37 100.0 35 ..................................... TTTCTAGACGGCTGGGGATCGGTCAGGCCCGGGAG 5260029 37 97.3 37 .............................T....... CCCCGGCCCCTGTCAACGGCCCCCACCCCGGGCAGGT 5260103 37 97.3 39 .............................T....... TCTTCCAAACAGGTCACGGTGATCTGGCGCTTGTGCCGA 5260179 37 97.3 35 .............................T....... GCCATGTTGGGCCTCGCCCCGGACAGCACCGCGAG 5260251 37 100.0 37 ..................................... GCGATCTACGGAACGCTCTGTCACATCTGCGGTCATG 5260325 37 86.5 0 ....................G........GGG....G | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 91.9 33 GTGGCGGTCGTCCTCCGGGACGGCCGAGGATCGCAAC # Left flank : GCCCGCCATCTGCGCGGCGACCTCCCCGGCTACCTGCCGTGGAAGGTGACGGCGTAATGGACCTGCTGCTCACCTACGACGTGGACACGACGAACGCGGACGGCGCGCGGCGACTGCGCCGCGTCGCGAAGCTGTGCGAGGGCTACGGCCTCCGGGTGCAGAAGTCCGTCTTCGAGATCGTCACCGACGAGGCCGACCTGCTCCGCCTCCTGGCCCGCATCGACGACATCATCAACGCGGAACGCGACAGCATCCGCATCTACCGCCTCCCCGCAGGCGGCCTCGCCGACGTCCGAACCCTCGGCATCGCGCAGGTGCAGTCCCACCGGGACGACCTCGTCCTGTGAACCACGGGGATCTGTGCGCTTGAGGTTCGGAACCCCAAGTACACACGCGGCCTGCGGGTCGCACCGAAGAGAAAAGTCTGGGATGGGATTGATGTCGGGTGTGTTGGGTGTAGTGCTTCGCTCACCTTTCGTCATCACCACAGCTCAGATGCA # Right flank : GGGGATGAGGGGCTACTTACCGCAGCCGCTTGCTGGGTGGTCGGTGGGCTGCTTGCGGCTTGGTCTTCGCTTGCTCATCTGGTCTCGGTGCGCTCTTGGGCCCCAGGGCGCGGGTCGCCGTTGTCAGGCGTAGGTGGATGGATGGCGCGGCGGAGGTGGTGTGCTTCGGGGGTGTGGGTTGCGGTGGCGGCGTTGGTGAGGTCGTTTTCGAGGGTGATGGCGCGGTTGAGGGTGTTTTCGAGGAGGCCGATCAGTCCGGGTCTTGGGGCGTCGGGGAGGGCCCGGGGGCCGAGGACCTGGTGGGGCGGTGTGCAGAATTTTGCACGGTTGGGCTGGGCGCGGACGGAGGGAGGGACGCTGCGGTCACGATCTGGCCGACGAGGTGGGCGGTGAGGCGTTGGCTCTCCGCTCGGTGCGGGTGCGCAGTTGTTGGTGGAGGTCGACGGCGGTGTCGGGGGAGTGGCGGGCAAGGGGGAGGGGGTTGCAGGTTTGTCGAGGTG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.33, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTCCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 5263525-5264380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082362.1 Streptomyces sp. MA3_2.13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 5263525 37 100.0 36 ..................................... CAGGCGGCAGTCAGGGCGGCGAAGCGCTTGCTGGTC 5263598 37 100.0 35 ..................................... CTGCATGGGCGGGGCGGTGCCGGCGGCGACGTCCG 5263670 37 100.0 35 ..................................... CGTCGTCCACCAGTCGCCAGTAGTCGCCGTCGGCA 5263742 37 100.0 36 ..................................... GATGTAGCCGGCGTCGCCACCGGTCATCGCGATAGC 5263815 37 100.0 37 ..................................... TCCAGCGCGGCCTCACACCGCCCCAGCAGCTCGCGCT 5263889 37 100.0 37 ..................................... TCGATGACCCACAGGGGTTGCCCCTGCTCGTCGAGAA 5263963 37 100.0 37 ..................................... TCCCACACCGCGTCCTGGGAGAGGCGCCAGCCGGCGG 5264037 37 100.0 37 ..................................... GACGCGGTCGACCTCTCACCCGCCGCCATCGCCTGGG 5264111 37 97.3 36 .G................................... ACCGAGGGGACGGCAACCACGCCCTGCCCGCCGGTC 5264184 37 100.0 38 ..................................... AGCTTGAACCTCTCGATGTACTGCACGCCGTCACCCGT 5264259 37 97.3 48 ...................G................. CCGACCGCCAGCGAATCCTCCAAGCCGGCAATGGATGTGGCGGTCGCC 5264344 37 86.5 0 ..........T..................G...TTG. | ========== ====== ====== ====== ===================================== ================================================ ================== 12 37 98.4 38 GTGGCGGTCGCCCTCCGGGACGGCCGAGGATCGCAAC # Left flank : CGGAGGTACCGAGCCTTCTTCCCTCAGAAATCTTGGGATACGGCCGAAGTGCGGGACCTTGAGAGGCAGCGTCAAACATGGTGTGGAGCGTGGCTGTTGTTCGTGGCCTGTGCAAGGAGATTTGTCCCGTGCCGCGGCAGTCAGGGTTTGCCCGGTAGCGAGCGTCCTGGTGCGTGCGATCAGCTGGCAGCCGCATGTAGGTGTCCTGGCTGGGCTTTCGGCTAACGCGGCGAGTGCGCGCGCCAGGCGGCGAGCGGGGCAAACCCTGCCTGACGCACCCCACTCGTTCGGAACGACCACGTATAGTTCGATCGGGCCTGCGCGATGGCTCGTCTATCGTTCAACTGGACCCTGGACCCTGGACCATGGGGGTTCGGAACCCCAAGCGCACACGCGACACGCGGGTCGCACCGAAGAAAAATGCCGGAGATGGGCGTGGTGTCTGCCGTCATGTGAGTTATCGCTAGTCAGCAGAATGTCATCTTCCCAGTTCAAAGGCC # Right flank : CCTCCGGGGTGGGTGGGGCTGAGGCGGCCGACGGTCGCGCGTCGGGTGGTCAACTCGGGGGCGTCGTGTTGGCCGGCGGGGGCAGCGAGCTGTGCTGTTTTCGCAGGTCAGGTCGGTGGAGGGGAGAGCCCGGCGGTCGGGTCGTCTTGTCGTCGTGGTGTATGACCCCGTCGCGGGGGCTCCGGACACGGAGCCACCGCGTGGGGGTCAGTCGGCGATGCCGAAGAAGGAGATGGCCTCGGCCGCCATGCCGCTCATGGGGAGGGTGTGGCCCGCGCCCCGGACCGTGATGGACTCGACCCACACGGTGCCACCCGCGTCGGCGAAGTTCTCCCGTTCCCAGCCCGGTTGGGGCTGGTCAGTGAAGCTCGGGGTCTGGCTCAGGCCGTGGACGTCCGTCCACTGTTCGGTCGCCTCTCGGAGCAGCTGGAACGGGACCAGGGTGTCGTCCGTGCCGTGCCACAGCTGGATCGGCGGGCGAGGGCCGTTGTAGCCGGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.90,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //