Array 1 1262412-1259808 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ046817.1 Dickeya dianthicola RNS04.9 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1262411 32 100.0 36 ................................ AGCTCCTCATCAGTTGCCTGCCCGTCAGCATGGCGC 1262343 32 100.0 35 ................................ TTTTTGTGAGTGCCTGTAGTCTTTATCTCAAGCCA 1262276 32 100.0 34 ................................ TCATTCTTCGAACTCTCGTTCATTCTCCTCTCTC 1262210 32 100.0 35 ................................ TCTCTCTATAGTGACAGTCTATTGAGTATTTGAGC 1262143 32 100.0 33 ................................ CCCACATTTACAATTTCACCAGCCCTGTGACGC 1262078 32 100.0 35 ................................ CAGTTCATCCGGCGTGTAAACGCCAAGCAGCACAT 1262011 32 100.0 34 ................................ TCGCTTTCCCGATGCGATCGGCAATCTCTGTAAC 1261945 32 100.0 34 ................................ AGTGAAACTGTAATCATGTTACCCCCATTAACCC 1261879 32 100.0 33 ................................ ATGTTCAAGCAGCTGTTCCCCTATCTGAACAAG 1261814 32 100.0 34 ................................ TTCGGCAAGTCTACTGACAAAGGCCAGGTGACTG 1261748 32 100.0 33 ................................ CGTATCAAGTTCCAGACCGAAATGGACGGCCAT 1261683 32 100.0 35 ................................ AAGATCATCGGTGGTGTTGTCGGGACTTTCCTCGG 1261616 32 100.0 34 ................................ AATCGCACCGAGAATTTCAAGCCAAGGGATTCAT 1261550 32 100.0 34 ................................ CTCTTTATTGTTGATCGTCGTTAATAATTCTACA 1261484 32 100.0 33 ................................ CTCTGTCGTGATTTTGGGAGTATTGATGACATG 1261419 32 100.0 33 ................................ ACTCCATCTGCTTTGGGTGCTGTTGGACATCGA 1261354 32 100.0 34 ................................ TATATGTGGGGCGGCAAGACCCTATATTACAACA 1261288 32 100.0 34 ................................ ATTTTAAACCCCTCTGGATATTGCCTATACGGCA 1261222 32 100.0 34 ................................ CTTTGATCCAGACCATCGCTGGTATGGTGTTGTT 1261156 32 100.0 35 ................................ TTGACTTCCTGCAGGATCTGCAGCAAGCGAATCTT 1261089 32 100.0 34 ................................ TTCAATATATCGGTCACGAAGGACAGACGGGGTT 1261023 32 100.0 33 ................................ CCTATCACGCTGATCCAGCTTCAGGACATGAAC 1260958 32 100.0 33 ................................ TTGTGATGAGCCAGGATGAAATCCAGATTTCAT 1260893 32 100.0 34 ................................ ATATTCCTGAGGGGTGCGCAGGTCACTCACGATA 1260827 32 100.0 35 ................................ TGGTTAGTTACGTTCGTGAAGCGGATCATTGAGTT 1260760 32 100.0 33 ................................ AACCATGCGGCGCAGGGTAACGTTGCCAATCAG 1260695 32 100.0 34 ................................ CCTTCAGATGATGTGTATGGTTGCCGGAATGCCA 1260629 32 100.0 34 ................................ TCGTGAGCCAGGCGATTCAGCTCGAACGTGAGGT 1260563 32 100.0 35 ................................ CTTTGATCCAGACTATCGGCGGCCTGCTGATGTTT 1260496 32 100.0 34 ................................ TGTCACATGTATTGTCAATTTAATTTACAGCGGG 1260430 32 100.0 33 ................................ GGTAAAATGCAACTGCTCGTAGCCCACGATCTC 1260365 32 100.0 34 ................................ AGAGTAGTAGCAGACTCAAACGCTTTCTTGCCGT 1260299 32 100.0 34 ................................ ATTTTTACCGTCACTGGCTGGCCTGGTGATTTAC 1260233 32 100.0 34 ................................ TATCTCCAGCATCACGCCGCCGATGCTGAACATT 1260167 32 100.0 34 ................................ TTTGGTGATAGCTTACCAATTTTACCCTCCGCCC 1260101 32 100.0 34 ................................ TCTTTATGCGTTAACAATCACAATGCCGTCACCG 1260035 32 100.0 34 ................................ CGCCACTGGCTCCCATGCCTTGCGATAGGTTGCC 1259969 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 1259903 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 1259838 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.5 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3305855-3306980 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ046817.1 Dickeya dianthicola RNS04.9 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3305855 28 100.0 33 ............................ TGAGTGCAGTAAGGTTAGAGGAGTAGGCCGAAA 3305916 28 100.0 33 ............................ CGGCAGGACGTGAGACCTTCCGAGTGTGTGCGG 3305977 28 100.0 33 ............................ TGAAACTTTTCCTTATTGATTCAGGCGATGTTA 3306038 28 100.0 33 ............................ TGGATGGTAAGTACTACTCACATAGCGCCACGG 3306099 28 100.0 33 ............................ TGCGCAAGATGTGCTGCAGTGGCTGGGGTACTA 3306160 28 100.0 33 ............................ CTTCGCAGCGCATCGGGCTTGTTCGGCCTGTAG 3306221 28 100.0 33 ............................ CTGCTTACCATCAGCGAGGTTCAGAATCTCTTC 3306282 28 100.0 33 ............................ CTCCCCATAAGTTGCCTGCCCGTCAGCATGGCG 3306343 28 100.0 33 ............................ CAGCGTGCAACATTCAGTACTCACGTTAAGGGT 3306404 28 100.0 33 ............................ CGGCTAGTGTATACGGTGTGTGATACCAAAATG 3306465 28 100.0 33 ............................ TCAAGCCCTGTCCTGGTATGACACCAGCAGCAG 3306526 28 100.0 33 ............................ TGAAATAGCTCTGTAAGCCTTGCTGTTACTGGG 3306587 28 100.0 33 ............................ CAGGAGGTACTAGTATGACTGTTAGACTGAGTA 3306648 28 100.0 33 ............................ TCCTTCAGCGCAGAGTACGGCGGATACATCTGG 3306709 28 100.0 33 ............................ GCGACGGCACCGCGTTGTTCAACAACTGCGATC 3306770 28 100.0 33 ............................ TCTGTTCACCAAGTACCAGGATAACTTCGGCAT 3306831 28 100.0 33 ............................ TTTCTCGTCGGCGCTCATTTTTCCATTCAATCG 3306892 28 100.0 33 ............................ CGTAAACCTGCTGCGCGTTTTACTTCGCTTTCA 3306953 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAACCGTTGTGCATTGATCTGGCATTTTCTCTCTCACGAGAAATGGCTGGCCACTATGATAAACACAAAGTATCTGACGCATTCAGGAAGCGAGTTATTGCCATTGATTTGCTTAATCAAATCACCGCAGATGTTAATGAGTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACCTGCCACCTGCGGTTCGTGGGCGTATGAAACTCTGGTTCGTGGAGCCTCGCCCGAATGTGTTTGTCTCAGGTGTGAAAGACTCCGTGGCACAAACTGTGGTTGATTACTTGATGCAGTATTCACCAGCAGAGTCTGGTCTTATGCTGTTTCGAAGTATTCCACAACCGCCAGGTTACGAAATTCGTTACAAAGGCGAGGTAAGAAAGCCAATTACTCATATCAGTGGATTGCAACTGATTATAGAAACCCTGAAATCCCTGTAACCCACAGATATAGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : CCGATGTCAACAACGGGTAAAAAGTGATCCACTTACCGTCACCACCAACGGTTTAATATTGATCCACCTTGTTTACTCAGGATTAGCTTCTGCGATAACCCCGGCTTTGCGTTTCTGCTTCAGTCTATAGCTCTCCCCCTTTATTTGTACGACGTGCGAGTGGTGTAAGATCCGGTCCAGCATCGCTGATGTCAGAGCTGCATCACCGGCGAACGTCTGATCCCACTGCCCGAACGGCAGGTTAGATGTCAGGATCATCGCGCTCTTCTCGTAACGTTTGGCGATGACCTGGAAGAACAGCTTTGCCTCTTCCTGACTGAACGGCAGATAGCCGATTTCATCGATGATGAGCAGCTTTGGTGCCATCACGCCACGGTGAAGCGTGGTTTTATAGCGACCCTGACGTTGCGCCGTTGACAGCTGAAGCAACAGGTCCGCCGCCGTTGTGAAGCGAACCTTGATGCCCGCACGCACTGCCTCGTAGCCCATGGCTATCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3558210-3557701 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ046817.1 Dickeya dianthicola RNS04.9 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3558209 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 3558149 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 3558089 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 3558029 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 3557969 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 3557909 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 3557849 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 3557789 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 3557729 27 89.3 0 .......................-..CG | GG [3557706] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3566925-3568874 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ046817.1 Dickeya dianthicola RNS04.9 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3566925 28 100.0 32 ............................ TCTTCTGTGAGTTCGCGCACTTCAGACAATGT 3566985 28 100.0 32 ............................ GTGCCGCCGCCAATGCTGTCGCTGTCGCCGCC 3567045 28 100.0 32 ............................ GGTGAAGTGCATGGATTCTTTTTCCTGGCAGT 3567105 28 100.0 32 ............................ TTTACAGGCACGGGCATCAAAAATCTCTTTCA 3567165 28 100.0 32 ............................ TACAAAGTGGGTGTTGTGTGATTACGTTAAGT 3567225 28 100.0 32 ............................ GCCGAGACTACCGCCGATGCCGCTGCCCGTGC 3567285 28 100.0 32 ............................ ACCAGCAGTGAGAATATCGATGAGCTTTTCGG 3567345 28 100.0 32 ............................ TTAGTCAACTGCGCAGGGATAGCTTTAACAGC 3567405 28 100.0 32 ............................ AGATATATCCACACCAGCGGCGATGAGCATAT 3567465 28 100.0 32 ............................ TATGCTGCCCGTTCCGCCATCCGTGCTACCAC 3567525 28 100.0 32 ............................ ACCGATATATTCATCGTTAATAAGTTCATCAC 3567585 28 100.0 32 ............................ TGATTATGGTCGATGCTGCCAGCGCCAGAAAA 3567645 28 100.0 32 ............................ CGGTATCGTCGGTGCCGGTTCCTCCCCATCCA 3567705 28 100.0 32 ............................ GCGATTTAGTGCCCGCCGGGCGCTGATAGCGC 3567765 28 100.0 32 ............................ TATCGAGATGACATTGACAGAATGGGTTCGCT 3567825 28 100.0 32 ............................ ACTTCAACATCACCGGTATCAATGCGCCGTTG 3567885 28 100.0 32 ............................ CGGCGATTCAAGCGTGACAGCGCCGCTGGCAA 3567945 28 100.0 32 ............................ TGGTGGGTCAGTGCATCACCGTAAGGTCCCAT 3568005 28 100.0 32 ............................ CCGATCGATACGTGAGCACTGCTGACATAGTT 3568065 28 100.0 32 ............................ ATGCCGGAGATCAGCACCGGCCACCACAACCC 3568125 28 100.0 32 ............................ TGTAATATGTTTGCGGATGAGTAAACAAAGGC 3568185 28 100.0 32 ............................ TTCATATCTGCGAGAGCCATAATCTCTTATCC 3568245 28 100.0 32 ............................ AAATCAGACGCGCATTCTGTCGGTTGTCGGGA 3568305 28 100.0 32 ............................ GACGGGATGCCGAAATGGCGCCCACGGCAACC 3568365 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 3568425 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 3568486 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 3568546 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 3568606 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 3568666 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 3568726 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 3568786 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 3568846 27 85.7 0 ....................G..-..CG | AG [3568864] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.6 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //