Array 1 22289-21608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKT01000007.1 Enterococcus italicus DSM 15952 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 22288 36 100.0 37 .................................... GTATGCTTCCACTGCATCTATTTCACTATCCTTACCC 22215 36 100.0 36 .................................... CAACATCCTTCGCCACTGCCCACCATTCATCATCAA 22143 36 100.0 33 .................................... AGATCATATTTTTCTCTTATCTCCTGTAAAAGT 22074 36 100.0 38 .................................... AGCAACTTGTATGCTTCAAGTGGTGTCATTCGCTTAGT 22000 36 100.0 34 .................................... GGAAAATTTAAAAGAATTGACAAGTGAAGCATTA 21930 36 100.0 35 .................................... TCACGAACAACAAAATATGGTGCACGGTATGTGTA 21859 36 100.0 36 .................................... CTATCACTCACTTATTCAAATTAAGGTGGTGCTTTG 21787 36 100.0 36 .................................... ATTAAGTAAATCATATCTCCATCCACAAATTCACGA 21715 36 100.0 36 .................................... ATCTCGCTTATAGCCTTTTTTTCATTTGTCATCAGA 21643 36 83.3 0 ............................C.A.ATGG | ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 98.3 36 AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Left flank : TGCAAGAAGTTCCACGTTATGCTAGACTGAATATTCAATCTCCAACAAGTTTTAAATCTAATGGGCAATACGATATTTTTCCTGATCTGAAAAAAATTTTTCGTAGTATCATGCGAAATACGGATACTTTTTTTCCAGAGTATCGCTTATTTGATGGTGATACTTTAGAATATTTGGTTAGCAAAACAAAAATCGTAAATTATCAGCTAAGAAGCACGAAATTTCACCTAGAGGGAATTAAGATTCCATCCTTTCAAGGGAATTTTACAGTCCAACTGAATGGCCCATTACCTGTTAAGCAATTATCGTATTTTTTACTGACATTTGGGCAGTGGACAGGCATTGGAGTAAAAACAAGTTTAGGAATGGGAAAATATTTTCTAGAATAATGTTGTCCGTAAGCAGGACAAACTAGCAGTACATACTAAGTCATTTGTCCTGTTTGCGGACATGGAAAACTATCTGTTTACGCTGATATGATCGCCTTTTCAGGGCTATCT # Right flank : TTCTTTTGTATTTTTATTATCGATTAACACGTTTGGACTGTATTTTTTTTCAGGCATGGTTTAAACTAATGAAAAGCTTCAACATTAGGAGGAATGGCAATGAGTGAAAAGAAAGTAAAACCAGTAGGACCATATTCACGGTCTAGAAGAACCAGTGAACTTGTTTTTGTATCGGGGCAGTTAGGAATTGATCCTGAGACAGGGGCTTTAGTCGATGGTGTTGAAAATCAAGCGACGTTTTCATTAAAAAATGTGGCAGCAGTTCTTGAAGAAGATGGCCTAACATTAGCGAACGTAGTGAAGGCGACTGTCTTGTTAGCAAATATTGATGATTTTCAGGCAGTGAATGCGGTGTATGCGACGTTCTTTGAAGAGCCTTATCCAGCGAGAAGTGCCTTTGCAGTGAAAGATTTACCATTAGGCGCACTAGTTGAAATCGAAGTCATTGCTGAAAAAACACACTAGCATTACCTTAAAAAACGAATGCCAAAGTGTCGAAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 32251-31078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKT01000007.1 Enterococcus italicus DSM 15952 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 32250 36 100.0 35 .................................... ATTGCGTATCCAAACTCTTTATCTTTAAAGTATGT 32179 36 100.0 34 .................................... AAATAGTTGTAATTATCTATTGCTTTGTCTGTAT 32109 36 100.0 35 .................................... TCCTCTTACTTTTTCGTTTGTCATTTTTATTTCCT 32038 36 100.0 33 .................................... GACTTATGAAAGCTATTAAGTTTTCAAGTTGTT 31969 36 100.0 35 .................................... ATCGTCACAGAAATCTTAGCATTTTGGTAAGTTTT 31898 36 100.0 37 .................................... TCAATCCACGTTCTACCATGATTCTTGCAATGATGTT 31825 36 100.0 35 .................................... TGCTTGTGCCATGATTCCGTTTGTGCTTTGCTGTT 31754 36 100.0 33 .................................... GATACTAATAGCAATATGTTTGATATGCGTAAA 31685 36 100.0 36 .................................... GAAGCACTGAAAACGTTAAAAGAAATTGACAAAGAG 31613 36 100.0 35 .................................... TTTTAGTATCTAATTTCATCTTCACCAGTCAAAGT 31542 36 100.0 35 .................................... TCAAATGCTTCATCGTCATATTGTTGTAAGTATTC 31471 36 100.0 36 .................................... AGGACTTGACCAGGATAAATCAGATTGGCATTTTTG 31399 36 100.0 36 .................................... GCCGATGTTAAGCCATTGCTGTTTTCCCAATGATCT 31327 36 100.0 34 .................................... ACTCATTACGTACAATTCATTTTCTTGGTTCACG 31257 36 100.0 36 .................................... ACTGCTTTTTTGATATTTTTCACTTTAATGATTCCT 31185 36 100.0 36 .................................... GTCTAGAAATGCATCGCTATCTACAATCGTTCTTGC 31113 36 86.1 0 ..............................ACTT.T | ========== ====== ====== ====== ==================================== ===================================== ================== 17 36 99.2 35 AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Left flank : CCGTCCAAGATTTAGAACCCTTCCCGCAAGTACGATTTACGCAAGAAGACAACCATTACACCTTCTTTTCAGAGGATATCTTGGACTTCTTTGATGCAGAACAAGTCATCCATACCACTGATCGTGCCACCTTGGTCGGCATCTTACATGAAACAGATGCTTATGGTTCCGGTTCAGGTCTTGTGAAATACCCCGAAAGGCAAGGCATTAAATTAATTCCTTTAGAAAATGAGGAAGATAACCAGCTCGTGTTGATTTATAAAAACCAAGCAACATTCTCATTTTTAGGCAAGAAGTTTATTGCCTACTTAGAAGAGTACTTGGACAGTATGAGGATAGTGAAATAATCGTTTTCCTTAATTATTGTTTTGTGTATAATAAAGTTATCAGTTTGTCCGCAAATTGGACAAATGAGCTAATCTATTCTAGCAGTTTGTCCTATTTGTGGACGTGGAAAACCAGCTGTAGACGCTGATATTATCGCCTTTTCAGGGCTATCT # Right flank : TGATTTTGTTTATGTGAAGGAGTTTGTAATGGGGGAATGTAAGCGATTTAAAAAATAACCAGAGGGAGATGATAGAAAATGAAGGATATTATTTATGTTGAACGAAAGTATTTTTTAACCGTAAAAGGGGAGTCCATAAAATTCGTAAACGTGATGGACAAAACGGAAAAATACATCCCGCTTGATGATGTGGAATGGTTGATTTTTGATCATCCTAGTAGTTATTTTTCAAACAAATTAATTACTGAATGTATGGTTAGAGGGATAGGTGTGCTTTTTTGCGATGGCAAGCATTCACCAGATGCTATTTTACTGAATCAGTTTGGACATCGACAAAGATTAACGCGAGTGAATCATCAATTATCTGTATCGAATCGAACAAAAAAACGATTATGGAAGAAAATAATCAGGACCAAAATTCATAATCAAGCCCAATGCATTGATCAATTAACAGATAACCAGAAGAGCAGAGATTACCTTATGTCTCTGTCAAATTCTGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 68863-67301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKT01000007.1 Enterococcus italicus DSM 15952 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 68862 36 100.0 30 .................................... CTCACTCCTTTTTTTGATGACTTTGACCTT 68796 36 100.0 30 .................................... TTATTTCTTGTATTGTGTTTCGCACACCTT 68730 36 100.0 30 .................................... GATGTTGTTTGATAGCCAACCAGTGTCCCA 68664 36 100.0 30 .................................... GTTAAATAGCGTGCTTATGGCGCTAGGGTT 68598 36 100.0 30 .................................... AAACTGCAAAAAAAGAATTTACAATAGTCA 68532 36 100.0 30 .................................... AATTTGATCTATGTTGAAGGTCGTAAGTAC 68466 36 100.0 30 .................................... CCCCAGCATGACAAATCCTTTACCTTTCGT 68400 36 100.0 32 .................................... ACTATACCCTTGTTCAAAAATGGTGATATATC 68332 36 100.0 30 .................................... TTACGGTGTCAGGAGTTACGCCGTACAATT 68266 36 100.0 30 .................................... CATAGCTAGTGAGAATATCCATATCGTATT 68200 36 100.0 30 .................................... CGACGAGTTGATTTTTCCTTCCGAAAACGG 68134 36 100.0 30 .................................... TGATAAAGCAAAGAGATCTAATTTTAAGAT 68068 36 100.0 30 .................................... TCTGTAAAGGATATCCACGACACTGATAGT 68002 36 100.0 30 .................................... TCACGTTTTTAAACGCTTCATATAGACCTG 67936 36 100.0 30 .................................... AAATTTACGCTTTTTACGCACAATATGCCA 67870 36 100.0 31 .................................... TGGCGAAAAATTGTTGCCGGTTGTCACGCCG 67803 36 100.0 30 .................................... CGTTTTGTGTGCCTGTTTGTACATAAAAAT 67737 36 100.0 30 .................................... AAGAAAAAGCAAGAATCATCCTCGAAAATA 67671 36 100.0 30 .................................... ATTTGGATAAGCCGCCATCCATAGTGAGTT 67605 36 100.0 30 .................................... CGATTGTAGAGAGAGCAGAAAGACTTGCAA 67539 36 100.0 30 .................................... TGGAAGTATTTTCAAGATGGGCTTTGATAC 67473 36 100.0 30 .................................... TATTGTGTGCTTACTATGACGAGTTTTACT 67407 36 100.0 30 .................................... AAATGCTTCTTCCAGTTGCACACGTTGGTC 67341 36 88.9 0 ..................T.......T...T.T... | G,TTG,A [67303,67311,67316] ========== ====== ====== ====== ==================================== ================================ ================== 24 36 99.5 30 GTTTTAGAGCTATGTTGAATCGAATGCTTCCAAAAC # Left flank : AGTTAAATCGATGATTGACAAATTGACTTCCACAATAACCGAAATCATCAGTTATGAATTGATTGAAAATGAAATGGATTTAGAGTATGACGAAATTACTATACAGGAACTTTTTAAATCATTGGGGATTAAAATTGAGGTGAAGAGTGATACAATTTTTGATAAGGTAATTGAGATTATCCAAGTTTTTAAATTTTTGACTAAAAAGAAACTGCTAATTTTTATTAATGTGGGTACTTATTTAACGAAAAAAGAAATGAAATATCTAGACGAATATGTAAAATTGAATCATGTTAAATTATTGATGATAGAGGGACACAGAGTAGAGGGGATGCCACAGTATATTTTAGATTCCGACTACTATTTGGATTTAGATTTATAGATAAATAATTGTTCCTTGACAATTGAATATTTGATAAAATTTACTGCATTCGATTCTGAAACTTTGCTAGAGTGAATAGCGCGATTACGGAACTTTGGAGATAAAAAATATCTGCGAG # Right flank : TTGAATACATAGGCTATGTAAAATATCTTGTATAATCAATACAGAGGATAGAATCTCTGAGAATAATCACCCTCAAAAAGGAGAATAATATGGATTATACGCGTTTATACAATATGTCATTTGCATCTGTTTATGATCTTTACCTAAAGAAAATTGAACGGAAAGAACGTACCAAAGAGGAATTGGATGCGGTATTGAGTTGGCTTACTGGTTTTTCAGATGAACAGTTTCAGACATTGATGACGGAAAAACACACGTTAAAAGAATTTTTTGAAGTGGCCGAGATTCATCCTTTAGCTGGATTAATCAAAGGAAAAATTTGTGGTGTGCAAATTGAAGAAATTCAAGATCCATTGATGAAAAAAATTCGTTACATGGATAAGTTGGTTGATGAATTAGCTAAGGGAAAAAAGATAGAAAAAATTTTGCGCACGAAATAAAGATGCCTCGAGTAGGACATATTTAATTTTTTGCTAAGAGACTGAATAAATAGCGAGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGAATCGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //