Array 1 5376-6868 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJW01000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5376 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5437 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5498 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5559 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5620 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5681 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5742 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5803 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5864 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5925 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5986 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6047 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6108 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6169 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6230 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6291 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6353 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6414 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6475 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6536 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6597 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6658 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6719 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6780 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6841 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23000-24964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJW01000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23000 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23061 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23122 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23183 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23244 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23305 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23366 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23428 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23489 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23550 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23611 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23672 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23733 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23794 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23855 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23916 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23977 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 24038 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24099 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24160 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24221 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24283 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 24344 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [24386] 24386 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24447 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24508 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24569 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24630 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24691 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24752 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24813 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24874 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24935 29 96.6 0 A............................ | A [24961] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //