Array 1 141805-141084 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290820.1 Corynebacterium durum F0235 Scfld124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 141804 37 100.0 38 ..................................... TGATATCATCAATTCTTTCGATGAGACGAAAATCAAAG 141729 37 89.2 8 .................................NNNN NNNNNNNN Deletion [141685] 141684 37 78.4 39 NNNNNNNN............................. GACTTGTACGGCGAGACTCGGTAGTTCTGATAGTGGTAT 141608 37 100.0 37 ..................................... TCGAACACCTCAGCAATAATTTCATGTCCGTTATACT 141534 37 100.0 38 ..................................... AACGAAGAATGAACCGATAATATCTCCAGCAGAATTAA 141459 37 100.0 34 ..................................... TTGTGCTCCACCGCCGTAAACCGTGGGCTTACCT 141388 37 100.0 37 ..................................... GCGCACCCCGCGCTAAATTCCAGCTCTGGTGGATGGT 141314 37 89.2 9 .................................NNNN NNNNNNNNN Deletion [141269] 141268 37 81.1 35 NNNNNNN.............................. TTTTTCACCTAACCAGATATTACCTTTAGACCAGC 141196 37 100.0 39 ..................................... AGCTTCAGAGACTGACGAGCAACAACGCCTGTCAAAAGG 141120 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 94.4 32 GTCAGAACCCAAGTACCGCGATATAGCGGATTGAAAC # Left flank : CGTACAGGAACCGCGCTCGCATGCATTGCGGTGCTTGATGGAATAGATTCAGCCAGTTCAGTGGCCTTTATTCGAGAAAGCTACCATCCGCAAGCAGTGGAAACTCCATGGCAACGCTGGTACATTTCACGGTTTGCGTCCACAGTTGGTCAGTGAAGGAACGCGAAAGAGAAGCGCTTTGTTGTTTGGTTGTTTATGTTGCGACATGCGGGCGTGCCTCACGATTATCGCTGGATAAGCGTGTTACGGTGAGGTATCTACGTTGACGCGTCCCCATCAAAGCGCTATCTCCCCAGTTCAAGCACAGTTTTGAACGGGGTTAACCGGCAGGGGTGGTGGGGTGGTCTCAGATGACTCGATACCGGCGTTTGGTGTGTAGTGGTTTGACCTGGTGTTTTTATCTTAATTTAAGGATCAAATCTGGGAATGTGATCTATTCGACGGGGGGTGTGTAAACCGTTTCCTCCGCCGCTGGTCAGAGGGGGTGTTTTTCTGGTAGG # Right flank : CAGCAGGCTGTGTGCAGTCAAATAGCTACGCACCCTCTGTCAGAACCCAAGTACCGCGATATAGCGGATTNNNNNNNNNNNNNNNNNNNNAACCCAAGTACCGCGATATAGCGGATTGAAACAGGACATCTTCGCGCATTTGCGCGAGCTCGTTGGGTCAGAACCCAAGTACCGCGATATAGCGGATGGGAAACACCCCTGCTTTCTTTTCCTTGCTTCGCCTTGTGTTGTTTAGAGCGGAATTACCGGGATTATTCACATGCCTTAACGCAATTAAATTCGTTAAATAAAGCCGAATATTTGTGCTGTCATTCAATGAAACTGCGACCCGATTTCGATTATCTGGAAAAATTATTCACTGTCCTAAAGAATATTCAAAAGTGGTTATTTTCTGGGATTGTTCCTTGTAGTATGGGTGCCACGCGCGGTACGGCAGTACGATCGGAAGGCGGGAACTAACTATGCTGAGTGTTTCCACTTTGGGTAGGAAAATCACCACG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACCCAAGTACCGCGATATAGCGGATTGAAAC # Alternate repeat : GTCAGAACCCAAGTACCGCGATATAGCGGATTGNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 565393-565728 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290831.1 Corynebacterium durum F0235 Scfld66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 565393 38 86.8 38 NNNNN................................. ATCTCCTAGAGTTTCCCAGTTGATAATCTCCCTGATGT 565469 38 100.0 38 ...................................... TCATCACCGGGCTCTTCACCTGGCGTACAGCGCACCAT 565545 38 100.0 33 ...................................... CTGTTCGCCTCGCTGATGAGGTCAAGGCGGCGA 565616 38 97.4 38 .....................................C CAGTGCCGCAGCTAAAAGAAAGATCCCAGCACGTCACG 565692 37 76.3 0 T.G.-.A......................C.AC...TC | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 92.1 37 GTCAGATACCAAGTACCGCGATATAGCGGATGGAAACT # Left flank : TGAAACAACCCCAGAAGTTGACGCACATCAACATCCTGAAATCGAAAAATGATAGCAAAACAACAGCAACGCACCATTTTGCCCACAACGAAAGGTGCGTTGCTCCCCCATTTGCACCGTTTAATCATGTTACGGTGATAGTATCCATGATGACACGTCCCCTATCTTCCCTGTTCAAACCCAGTTTTGAACGGGGCTAACGCGTGGGGGTGCAAAACCGGCTTGAGAAAACTCGATACCGGCGTTTGGTGTACAGTGGGTTGACCTGGTGTTTTTATCGTGATTTAAGGATGCAAATGTGGGAATGTGATCTATTCGACGGGGGTGTGTAAACCGTTTCCTCCGCCGCTGGTCAGAAGGGGTGTTTTTCTGGTAGGGTCAGATACCAAGTACCGCGATATAGCGGATGGAAACAAGCGTGCGATCTCAATCGCACGTTCGGCTGCACGCTCGTCAGATACCAAGTACCGCGATATAGCGGATGGNNNNNNNNNNNNNNN # Right flank : CAATTGCCGAGAGAGAAATTCCTTCATGTAAGGCAATTTTCTCGCACGATGACTGATTAAATAAAAAGAGGGTCCGCGTAATCGCGGACCCCACTTTTCTGGTTAAATTTCGTTAGATAAATTCACATGAAGCGTCATTATTCGTAAGGCACGATGACACCGCTGGGCCAAACAGCCTAACAAGGAATAGCGTAGCGATGGAATCTTTGACACCATCCACAATGCCTTCGCTAGATGTTGTCACTTGATTGTTTGCTTACGGCTTCTGGTTAGCCGCGTGAACTGCGGGAATAGCGAGACCGCTCGCAAGCATGCTGGTCGCCACAACCACTGCAAGACGGCGTTGAAGCTTCATAATTTCTCCTCTGATCGGGTTCTAACCTTCTGATAGAAGTCAACTTATCACTAGATTGATGACGTGTCATTAATTAAATTCAAAATCGTCTGGCCAGTTAAAACAACGAATCACCAGAGAAATAACATACAAGATTGCATTCGGC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGATACCAAGTACCGCGATATAGCGGATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 593707-594839 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290831.1 Corynebacterium durum F0235 Scfld66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 593707 37 100.0 37 ..................................... TCTTCCTTTGCCTGGAGGATCAGTGACCCGGTTTGCA 593781 37 100.0 34 ..................................... TCAAGCGCAAGTCCCTCGGCAATACCGGGGCAAT 593852 37 83.8 7 ...............................NNNNNN NNNNNNN Deletion [593896] 593896 37 81.1 37 NNNNNNN.............................. TCAAATCCCGAAGCCAAGGCACCCGCCAGGGTACCGA 593970 37 100.0 37 ..................................... TCTTCCTTTGCCTGGAGGATCAGTGACCCGGTTTGCA 594044 37 100.0 35 ..................................... TGTCTAGGTCATCGTTGAGGTACGGGTGGTTTTGA 594116 37 100.0 38 ..................................... TCAGCAGTAGCTGCCCGCTTGAGATGCCACAAGTGAAT 594191 37 97.3 38 ................................G.... TCGGATCTGAGCAGACATTTTACTGTCTTTCCCCTACT 594266 37 89.2 11 .................................NNNN NNNNNNNNNNN Deletion [594314] 594314 37 86.5 36 NNNNN................................ TTTACGCGACCGTCGAAACCGTGGGTGCTGGAAATG 594387 37 97.3 40 .......G............................. TCCTCGTCACTAATTTCTTTTCGGCTACCCAAAGGGCAGC 594464 37 100.0 33 ..................................... TCGCCAGTCCGGCGTTTTCTCCCAGCTCCACCC 594534 37 86.5 7 ................................NNNNN NNNNNNN Deletion [594578] 594578 37 78.4 40 NNNNNNNN............................. CACGCTCCACTCGCTTAAACGGGGAGGTAGCCTGTAGAGG 594655 37 100.0 38 ..................................... CGGTAAAAATTAAGCTACCATAGCGTCCCACCTTTCGG 594730 37 100.0 36 ..................................... CACTGCGGCAAGGCTACAGTCCCAGCGTGCCGGGAG 594803 37 78.4 0 .....G.....G.......A.A.....A...AG..C. | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 92.9 32 GTTGGAAACCAAGTACCGCGATATAGCGGATGTAAAC # Left flank : ACTACGAATGGAGTGGAATGTCATGGCGATGATGAACATTGTGGCCTACGACGTGCAGAACAACAACAATCGCGCCAAAATAGCCGCTCGTCTCCAAGCGCACGGCAACCGCATCCAACGGTCAGTCTTTCTGATCACCATCGAGCGCAGTGAACTAGACACACTGATCGAACAAATCGAACAGTTCATGGACCACAACCACGACAGCTTGATCGTCATACGACAATGCCAAACCTGCTGGTCCCACGCGCAATTGAAAGGACAAATAGATGATGACCCCGACGAACTCTGTTGGACAGTTATGTGACATGAACAGTGCTAAGGTGGGGGCGCTTAGGGGGTGGTCTCAGATAACTCGATACCGGCGTTTGGTGTGTAGTGGGTTGACCTGGTGTTTTTATCGTGATTTAAGGATGCAAATGTGGGAATGTGATCTATTCGACGGGGGTGTGTAAACCGTTTCCTCCGCCGCTGGTCAGAGGGGACGTTTTTGAGGTAGG # Right flank : CGTAGATCTCAGCCCCCCCCCTAAGCTATAAGCAGCGCAGCTGCCGAGCGTCACGTTTTGTGAATGCTCAGCGCCATCGACCTTGCACGCCACCACCAACTGCGTGGTCTGATTGGGCTAAGCCAAATAAGCAAGCAAGACTAGACAACCTGAAATCCTCTAGCATCACCATGCTCACTCCACCTGTGCGCAGCATAAAAAGGCAATCAAGTTAGATTCTAACTTGATTGCCTAAAATAACTTCCTTGTTATCAATCATCTATAGGTGGAGCCACATACCCATACCTTTCCAGCTGTCGATATTGCTCATCAAGTGACTTCTGAGATGGGTGAACACGGGCTATTCTCCACCTCCCACCAATTACGCCTCCCCCACGCTCCCAGTTGAGAATAACCAAATTTTCCCAAAGTGAACTATTATCACGCCCGGGGTTCAACAAATCAAAGGCTTGACCCAGCTCAAAAGAAACAGTTTTCGGAAGGCGGGCACACAAAACAAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAAACCAAGTACCGCGATATAGCGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 159633-159298 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290824.1 Corynebacterium durum F0235 Scfld189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 159632 37 97.3 37 ................................T.... TCTTCCTTTGCCTGGAGGATCAGTGACCCGGTTTGCA 159558 37 100.0 38 ..................................... CTTTCGAAGTTTCTTACTGCCCTGCCAATGACCCATAT 159483 37 100.0 39 ..................................... TGCGAATCAAGGAATTCTTTGAAGTCTCGGTCCACAGTC 159407 37 100.0 36 ..................................... AACTACCGCTGAGCACGCCCATAATGCTGGCGACAG 159334 37 89.2 0 ...........................A...TC...A | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 97.3 38 GTTGGAAACCAAGTACCGCGATATAGCGGATGGAAAC # Left flank : CATTCCAGCCGCCACTAGCCGTTGTCACCTAGCAACAGCCAGCACCTCAAAGACATTTTCCGAACCCCAAAGCGCCTTTTATACCCCTATCGCACCGATCAAGACCGTGATACACGGGAGCACTTTGGGTAGCTGACCCTTTTCCGGTGCACAAATCAGAGACGACCAGCATCACGAAACCGCAGTTTGCAAGGGCTTACGACCAATAACCACAATCATTGTTTTACAGCCAACTATCACGCAATAAACCAGGCGTGTCTCACGATTATCGCTGGATAAGCGTGTTACGGTGGGATATGTACGCTGACACGTCCCCACCAATGCCCCATCTCGCCAGTTCAAGTATGGTTTTGAACGGGGTTAACCTGCAGGGGTGGTGGGGTGGTCTCAGATAACTCGATACCGGCGTTTNNNNNNNNNNNNNNNNNNNNAAACCAAGTACCGCGATATAGCGGATGGAAACTTTGTGCCCTTTGTGCATTATGACCCTGACTATACCG # Right flank : CAGGTCTATTGACGGAATCAGACCGCTTTATTGAGTTGTCATCAAGCGTTGCGTCTATTACAAACGCTTGGTGCTATACATTGTGCACACCCCAACAAATCCAGACTCGCACGTAAACTAGGCTTTTTATTTTCACCCAGGCAGCATGCACAAATTTTAGTTGAATTTGGCGCAGATACCAGAAGCATCTCTAGAATGCTCGCATGACGCAAAAACAGATAGGCTGCTGAATCGAATACGCAGCAATTTTACTAGCAGCCAAAGGCTAGGTCGACATCTGCAATATCGCCACTCCGCAAGCCAGCGGAAACACTATCACTTACGGTGAAATCGGCGACGAGCTTGTTTTTCTATAGATATCTATAAGCAACCTTGATGCACCCAGCAGCCCAAAGGTTACATCTACGGGCAATAATGCAACATTTCTCTCACAACGACTTTTTGAATGGAAAAATTTCCGCCTACTGGCCCATACTGATGTAAGCACAGATGTAGAGCCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAAACCAAGTACCGCGATATAGCGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //