Array 1 135547-135816 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDAK01000173.1 Vibrio sp. 10N.261.45.A1 10N.261.45.A1_contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 135547 30 100.0 30 .............................. TTGTATCGGTGATGATGTGCTCGTGCCTCC 135607 30 100.0 30 .............................. CTGGACTGGAGCTGACGCGCTTGTACCACT 135667 30 83.3 30 ...T.TA......A.......G........ TTGGCCGGGTGCCGTTGTGCCTGTGCCACT 135727 30 96.7 30 ..............T............... TTGTATCGGTGATGATGTGCTCGTGCCTCC 135787 30 93.3 0 ..............T......G........ | ========== ====== ====== ====== ============================== ============================== ================== 5 30 94.7 30 TTCAGCCGGAGTTGCATTCTCTCCACCTTG # Left flank : CCTTGCAGGCTAAGTTCTTCCGCTAATGAAATAGTAGAAGTTAGAGCTAGGGTTGACAGTAGAATGACTTTCTTCATCATTTTGCCTTACGCGTTTTCAACAGATGACGTTAGGTTAACGCACGATCGAATATCCGCAACCCCATAAAATAAAAAAGCAGCCCAAGGCTGCTTTTTATTACTCTAGATTCAAAGGTCTTTATGTATAGTTAATTGACCTGCCCCGCTAGAGTTTTGGTGTAGAGTTATTGGCTCTGAACCTGGACTGTTGTCACTCTGCAATTCCAATTTCTCAAAACCATAAGCTTCTGAGCTTGACGTCTTAGTATAAGTTTCGCCACCAAGTTCAAACTTTTGACCATCTTCCGCCTGGTGCATGGCATCAAATGAATGTGGTGAAACAGTCGTACCTTCACTATTTGTAGTTGCTTCAAGCTTCACTGGTTCAGGAGTAGGTGAAGAACTTACGGGTTGCACTGGTGTCGCTGTGCTTGTCCCACT # Right flank : TTGGC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGGAGTTGCATTCTCTCCACCTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 60510-60716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDAK01000180.1 Vibrio sp. 10N.261.45.A1 10N.261.45.A1_contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60510 28 100.0 32 ............................ TTGTCAGATGCTTGGGCTAAGCCAATCTTTTC 60570 28 100.0 31 ............................ TAATTACACGCCTTGCGAAGTTTGTATTGCT 60629 28 100.0 32 ............................ ATAGTCATAGTGAGCAAAAATTCGATACATGT 60689 28 89.3 0 ...T................T......T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGACCTGCCGCATAGGCAGCTAAGAAA # Left flank : CTGTGATGGTAAATGAAGGTTTATTTGAGATCTCCACTGTTTGTGAGGTGCCTGACATTGCGGTTGAGGTGAGGTTTGTCCGTAACCAAACGATCGGGAAAAACTTTTTGGGCTCTAAGAAACGCCGAATCAAACGCAGCATGGCGAGAGCCGAACTATCTGGTGCTGAACCATCATTACCAGTCACTAATGAAGAGCGGGTCATCGATAGTTTTCATCGAATACCAATCTCCAGCGCTTCATCTGGGGAAAGTTATATTTTGTTTGTACAAAAGAAGCTTGTTAGTGAGCGCGTTGCAGCAAACTTTAATAGCTATGGCTTAGCAACCAATCAAGAAAGAAAAGGCACGGTACCTGAGTTACGTTCTTAAACCCTTTTTCTAAAGCTCTTTTTTAGAGAATTAAAAACAAGGACTTACAGAAGTAAGAAGAAAAAGGGTATTTTGGGATTTTGTGATGTAAAACCAATGGAATTAACAGCTTAGTGACTATAGTTAACA # Right flank : TAGGCCAGGAAGAAAGCAACCATCCTGCTGAACAAGCAGTTAATAATCAAAACCATTGAGTTTCGGCTTGATGGTTTTTCTTTTGTGCGTAGGTAGTAGCAAAATCCCATAGAATGTAGGTCGTATTTAGTATTGCTACCAAAGAGTGAGTTTGGATGCTCTTTGACCATAAACAGAGGTACATAAACACATGGCATAAACACATGGCATTTTCTAGCTCGAAAATGCCCCAAAGTGAGCCAGAGAGGGATTGAACTCAGTTTCAAACCCTGCACTTGCCTTACTTTTCCTCATGCCTAGAGTTCCAACAATGTAGCTAAATGTTTTGATCCACAACAGACTAACCTTTAATCACACTTACGCACGAATATGTTGTTCAACTATTTTTAAGCCATTGAATAATAGAGAACTAAAAGGAACTTTATGATTGATAACGTGCCTTGAATCGTAAGCAATATGTGCTTGCACGGTTTTCAACTAAAAATTAGAATCAAACTGGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTACCTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //