Array 1 179-5448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGKM010000051.1 Empedobacter falsenii strain Q1655 NODE_51_length_15660_cov_17.801262, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 179 47 100.0 30 ............................................... TGGCATGGCAAAAGATCAAGTATATGATGG 256 47 100.0 30 ............................................... ATCTTACAACTAAATCAACTTAATGACGTA 333 47 100.0 30 ............................................... TAAAAAGTAGTAAATAAATAGATCATTGCA 410 47 100.0 30 ............................................... TAAACGGCATTAATATTATGACAACTTCAA 487 47 100.0 30 ............................................... GTAGTAGCTTCGATGTAGTTGTAATCTTTA 564 47 100.0 30 ............................................... CTGCGTTTTCAATTGTCATTACAGAGGATG 641 47 100.0 30 ............................................... TTGACCACTTTAAAATAATTATACTTTCTC 718 47 100.0 30 ............................................... TATTAATTTATTTAGAAAGTAAATAATAAC 795 47 100.0 30 ............................................... GGACTTACGGAGGTTCTCATGTTCTGCTGG 872 47 100.0 30 ............................................... TGTTGCTCCTCAAGCAAAATTGAGTGCTGC 949 47 100.0 30 ............................................... CTGCAGTTGCTAACGTTGTAGTTGCTTTAC 1026 47 100.0 30 ............................................... AACTCATTGCGTAAACCTCGTTTACTTGGT 1103 47 100.0 30 ............................................... TTTCGATATTAAACGCGAAGTATATGCCTA 1180 47 100.0 30 ............................................... CTATCGGAACAATTGAACACGCAATCGAAT 1257 47 100.0 30 ............................................... AAACTCTTTCAATTGTTACACGACCTTGTG 1334 47 100.0 30 ............................................... TAAACGGCTTGATTTTGCAATGTAGTTTCT 1411 47 100.0 30 ............................................... GAACAACAAATATTAAAATATTTACTCCAA 1488 47 100.0 30 ............................................... TGTAACAAAAAAGGATTGGAAACAAAAATG 1565 47 100.0 30 ............................................... AGGTTGGAATCCTGAAGGTTTTTTCGTTTG 1642 47 100.0 30 ............................................... AGTATTTACAAGTCAATTCTTAAGCTATTA 1719 47 100.0 30 ............................................... ACACTCGTAGACATTTACGAAAAGACATTA 1796 47 100.0 30 ............................................... GCAAAATAAAAAGTATAAACGAATAACAGT 1873 47 100.0 30 ............................................... GCAAAATAAAAAGTATAAACGAATAACAGT 1950 47 100.0 18 ............................................... AAGGTGCGCCAGATACCT Deletion [2015] 2015 47 100.0 30 ............................................... AAAGTTTTTTATAAAGCTGTAAAGCTGGTT 2092 47 100.0 30 ............................................... TTATAAGGGAAATTCTGTTACATATTATTA 2169 47 100.0 30 ............................................... ATAACAGAAGCTAACGAATAGCGAAGGCGT 2246 47 100.0 30 ............................................... AATTTTCAATTCTAATTTGATTATCACTTA 2323 47 100.0 30 ............................................... TAACCTTGATAAATCGATACCTTGATTATA 2400 47 100.0 30 ............................................... TACTTACAGTCCAACTGTAGCAACATCACT 2477 47 100.0 30 ............................................... GCATTTAAAAAACATTAGTACCTTAACAGC 2554 47 100.0 30 ............................................... TTTCACGGTCGAAGGGAAAACAGTTACAAT 2631 47 100.0 30 ............................................... TCACCACAAAAAAAGGAGGATCAAAACTTA 2708 47 100.0 30 ............................................... CGAAATTGCTAAATCTATCACTGGTTTCGA 2785 47 100.0 30 ............................................... CAAACATAATCAAGACAAATTTAAACAACA 2862 47 100.0 30 ............................................... GCGTTCTTGGATTTGTTAAACTGGTGAAGT 2939 47 100.0 30 ............................................... GTAAAAAATGTGTAAGTCCCAGTGTTCACT 3016 47 100.0 30 ............................................... TTTTCAATATGATTACCATTCATTTTCCAG 3093 47 100.0 30 ............................................... ATCATTTTGAAGTGCTGCTTTAATATCCGG 3170 47 100.0 30 ............................................... TAAGTAGGAACTTATTTACTAATGTTTCAA 3247 47 100.0 30 ............................................... CATAATACTAACAGTAATACTAACAAACCA 3324 47 100.0 30 ............................................... TCAAACCTAACGGCACGCTTTAACTCGCTT 3401 47 100.0 30 ............................................... TTTTGTCCAAGAAATAGTAGAATTGATTGG 3478 47 100.0 30 ............................................... TTAATTACCAAAGCATATAAATATAACTAA 3555 47 100.0 30 ............................................... ATAACTGGTCCGACTTTCATCGACCAATGA 3632 47 100.0 30 ............................................... TGCCGAAGTTCAGAAGTTAGAGGACGCCTA 3709 47 100.0 30 ............................................... TAAGGCTGCTTATTTTGTACATTATTGTAA 3786 47 100.0 30 ............................................... TTGCAAAGAGTTAAAAGTACCATCAACACT 3863 47 100.0 30 ............................................... CTAATTGCATTGGTAAACAAGGTTCTCCAA 3940 47 100.0 30 ............................................... TAGATGATGACAAAGCAGGAAAAGCCGCTA 4017 47 100.0 30 ............................................... TTATCCGAACAAAGTAAAAGTAACCATGCA 4094 47 100.0 29 ............................................... TCGCGTGCTTTTCTGTCTTCATTCTTGGC 4170 47 100.0 30 ............................................... CTTCTCCGTCGCCAAAAATGATCCAATTTG 4247 47 100.0 30 ............................................... GACGAAATGTTTTCAAAGTCTTTTCTTTGA 4324 47 100.0 30 ............................................... CTGGATGTAACATGTCGAGACGTTCCGTAA 4401 47 100.0 30 ............................................... AGGAAAGCGATCTTCTATATACATTCGTGT 4478 47 100.0 30 ............................................... GAAGAGAATAAAAAAAATAATGAAAATGAA 4555 47 100.0 30 ............................................... TAAGTATCAAATCTTGCACACGCAAGGAAA 4632 47 100.0 30 ............................................... ATGGCAATGGTAAACAACAACTTAAAAAAC 4709 47 100.0 30 ............................................... TAAAAATCAAAAAATCTTTGTATTGAATTA 4786 47 100.0 30 ............................................... ACCAGGAAGTAAAACCAGGAAGATAAACGT 4863 47 100.0 30 ............................................... TATATATCAAGTAACAAAGTACTGCTTTTT 4940 47 100.0 30 ............................................... TTTTAACGAGTATTTTGTGGAAGCTGCATA 5017 47 100.0 30 ............................................... TGTGTTCTTAGATTTGAAGCTGCACGAAAT 5094 47 100.0 30 ............................................... TCCTAACTACGGAAATAAAACTATTCCTGC 5171 47 100.0 30 ............................................... AACTATATTGAAGCTACAACCACACGTATA 5248 47 100.0 30 ............................................... TATTGGATGTATTTATTGCATCAAATAATA 5325 47 100.0 30 ............................................... TAAAAAAATAGTATTAATTTAGTAGCGTTA 5402 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 69 47 100.0 30 GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Left flank : ATTTGGTATAACAGAAATAGAAGACATAAAGCTTTGAATTATAAAACTATTTTTGAGTTTAATAATAATTTACAATTTTTAAAAAATGTAGCTTAACTTACACTGGAAAATTCAGGGGGATATCCATATTTATCAAAGTAATTACAACAAAATATATCGTGTAAAAGTTGGTATTATAG # Right flank : CCTCATTTTTATTATCCTTTGTTTTAAAGGGTTTGAGAAGAAAAGTAGAAATGAGAAAAAAAGTAAAAACCGATAGAATACATATTATTCTATCGGTTTTTTTATTTCTAAAACAATTCTAATTGTTGGGGTCGTGTGGGTAAATTAGTTTCTTTTTTTGAAAAGAAGATCTCCATTTGTCCAAATTGTTTATCGGTAATACAAATAATTCCTACTTTCCCATATTCAGGTAATTTAGATTTGACGCGTTTTATATGTACCTCAGCATTCTCTTTACTTGGGCAATGCCGCAAATAAATCGAAAACTGAAACATTGCAAAACCATCGTCAAGCAATTCTTTTCGAAATCTTGTTGCTTGACTTCGTTGTTTCTTTGTTTCGGTTGGTAAATCGAATAAAACTAAAACCCACATAATTCTATATGCATTATAACGACTAAAACTCATACCATTTCAGGAAAACGAATCATACGCTGCTCCCCTGTCATACACTTATACAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: F [matched GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,4.5 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //