Array 1 172433-174536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172433 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 172494 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 172555 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 172616 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 172677 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 172738 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 172799 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 172860 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 172921 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 172982 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 173043 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 173104 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 173165 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 173226 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 173287 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 173348 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173409 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 173470 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173531 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 173592 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 173653 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 173714 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 173776 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 173837 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 173898 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 173959 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 174020 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 174082 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 174143 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 174204 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 174265 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 174326 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 174387 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 174448 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 174509 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191044-192719 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191044 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 191105 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 191166 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 191227 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 191288 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 191349 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 191410 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 191471 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 191532 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 191593 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 191654 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 191715 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 191776 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 191837 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 191898 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 191959 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 192020 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 192081 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 192142 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 192203 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 192264 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 192325 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 192386 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 192447 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 192508 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 192569 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 192630 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 192691 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 192983-193866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192983 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 193044 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 193105 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 193166 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 193227 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 193288 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 193349 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 193410 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 193471 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 193532 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 193593 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 193654 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 193715 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 193776 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 193837 29 93.1 0 A...........T................ | A [193863] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCCAATGGCAATTAATAACAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGCGAGACCACGAAAGAGGGAATACCGACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTGCGTGATGAGGTTCGCGGAGCATGTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCCCTTTCTGATTTTTTCCGTAATGTCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //