Array 1 326001-323147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEP01000001.1 Streptosporangium roseum strain NRRL B-2638 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 326000 29 100.0 32 ............................. CCATCAGGCCCGCCCTCCCTGCTCGGTGGCGG 325939 29 100.0 32 ............................. TACACGCTGAAGGCCGGCTACCACCCGCGGGC 325878 29 100.0 32 ............................. TTCCCCGGCCTCGGCGGGAAGAAGGCGCCCGG 325817 29 100.0 32 ............................. ATCGGTTGGCCTACCGTCACCGCCGTCATCGT 325756 29 100.0 32 ............................. TTGAACATGACGATCCCCTTGGACATGCGAAG 325695 29 100.0 32 ............................. GACCGAGACAGCTAATCCAGTCGATCGAAAAG 325634 29 100.0 32 ............................. TTCACCTTCGTCTTGGCCTGGAAGGTCGTCGC 325573 29 100.0 32 ............................. GCCAAGTACTTCCGCGCCCGCTCCCGCACCTG 325512 29 100.0 32 ............................. TGAGCCGGTCATAGGCTGATCCATTGGTCGCA 325451 29 100.0 32 ............................. CCCCGACCATCCCCGCCCGTAACGCCCCAGAT 325390 29 100.0 32 ............................. ATCGCGTCCAACTCATTCCAGCAGCGCAAGAC 325329 29 100.0 32 ............................. TCACGCTCGGCCTGGGGGACATTGTCGATGTG 325268 29 100.0 26 ............................. ACCGGGCACCAGTTCAAGCCGATCAC 325207 29 86.2 4 .......................CCT..C CACG Deletion [325175] 325186 29 100.0 32 ............................. AACGGCTTGGCCGCGATGGCCACGCCGTTCTT 325125 29 100.0 32 ............................. AACGGCTTGGCCGCGATGGCCACGCCGTTCTT 325064 29 96.6 32 ............................C TGCGCCGATGCCCCGCGGCGGTGCGGGTGGGC 325003 29 100.0 32 ............................. CTGCTCCAGTGCCTGAACGACGACGCCGAGGT 324942 29 100.0 32 ............................. GCCAAGTACTTCCGCGCCCGCTCCCGCACCTG 324881 29 100.0 32 ............................. TCACTTTGAGGCCAGCGGCGTGGTGCGCCCCC 324820 29 100.0 32 ............................. GACATCGAGCAGGCGGTTGAGCAGCTCCACCA 324759 29 96.6 32 ............................C GTGGCCACGATCCGCACCCGGGGAAGGAATTC 324698 29 100.0 32 ............................. CGAAGTGGCTCATGTACACGCGAGGCCGAGCT 324637 28 96.6 32 .................-........... GTGTAGCCAGACCTGCGCCCCAGTTCGCGGAG 324577 29 100.0 32 ............................. TCGCTCGCCTCCGCCTGACCGCGGCGCTGACG 324516 29 100.0 32 ............................. AAGCTCCGCGATGAGCGGGAGGAGCAGGCCGC 324455 29 100.0 32 ............................. GAGTTCCACATGCTCGACACCGACTTCACCGC 324394 29 100.0 32 ............................. CCCTGGAGTGATCCGGGCATGGTGATACCGCC 324333 29 100.0 32 ............................. TACGTCGCCTCCTGGGCCGAGCAGCTCGACCG 324272 29 100.0 32 ............................. ATGTACGCCTTCCCCACCCCCGGCGGCATGCA 324211 29 100.0 31 ............................. CGCATCGCGTCCTGGCCGCCGCCGCGGATCC 324151 29 100.0 32 ............................. GCGCCGAACGGCCGGGCATCGGTCGGGCGTTG 324090 29 100.0 32 ............................. CCCGGCGGCGGCTGGCCCGGCCGGTACCTCGC 324029 29 100.0 32 ............................. GTCATCGGCCTGTACGCGAGCCAGCACCAGGT 323968 29 100.0 32 ............................. CTGTTCCCGCGGCGCGTTGAGGTCGCGCTGAT 323907 29 100.0 32 ............................. CGGCGCATCCCTCACCTGCTGATCGCCGGCCA 323846 29 100.0 32 ............................. TCCTCAACCGGGACGCTCGCGGAGTCGGACAG 323785 29 100.0 32 ............................. GCCAGGACCAAGCAGGAGTACCGGCTCGACTA 323724 29 100.0 32 ............................. CGACGGCGTCGCCGTGCTCCTGCTCGTGGCCA 323663 29 100.0 32 ............................. GCAGACCTGACCGACGCTCTTATTCGCGTCGG 323602 29 100.0 32 ............................. ACGCCGGGATGCACGGCGACGACCGCCGTACC 323541 29 100.0 32 ............................. ATCGTCACCGCCTCCGGCCTGGCCATGCCTGA 323480 29 100.0 32 ............................. CTGCTGGGAAAGGACGTGGCACCCGCGTAGAT 323419 29 93.1 32 .......T....................A GTCACGAACATGAACGTCACCAGCTGGGCGAA 323358 29 100.0 32 ............................. AAGATCGAGGCCCGGCAGAGGTCGTTCGGTGC 323297 29 100.0 32 ............................. GTACTGCTGCTATGGATCACGAGAACATGCAC 323236 29 100.0 32 ............................. TAGATCGTGTCAAGGATCGCGAACCCTACCTG 323175 29 93.1 0 .C.........................T. | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.2 31 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : ATACGCGAGCAATGACCGGGCGTGCATCTCATCGGTTCCCAGCCCGCCCGCCAGGGAGGCGCGCAGGCCGGGAGAGAGGTAGTGATCCCACAGGGCCTCCACCGCTGCGGCGGAGTCGAGAAGGTGGCAGATCAGCGGATACCGCGTCGGAAGCCCTCGCGACTTGCCCCACAGAGCGAGGTCAACGTCCAAAGGGTCGTCCATCTCCACTCTCCATGGCCAGGCTGGGACCGCCGACAGGTCGGCGTCCGTCAGTCGGATTTACGAGAGATCACTGTAGAGACAGCCACCGACATTTCATCTCAAACGAAGAATGTGAAAATTATTCAATTTCGATTAGCCGTATTTGTGAACTTTGTGGCATTAGTGAAAATTTGTGATCATGTGAGCACCGGGGATGCGTCTCTTGGGGAGGGGTAGGCTGGTTCGCGATGCTTTCGACCACATGTTCGGCCTGCCGAAAACTTCAAGTGCAAATGTGAAACCGCAGGTCGGGAAGT # Right flank : TTTTCGGGCACTCAATCGAACTGGTGAGAAGGGCTCGCTTCACCGAAGAAAGGACGCGAAATCGTTTGAGCCGGTAGTCAGTAGAGTGGCAATCGGGCATCCAAGCTTGCTACCTAAGCCACTCTGGAGTTGATCATCATGAGCAGCCGTCAGGATTGGGCGGGGAGCTCGGCTTCGTACCTGACCCCACGGTCCGATGGCCAGGTCGACGCCTGGTCGGACGAGCTCGCCGCGATGGGCAAGACCGGCTCGCAACATCTCACTGAGGTCGTGGAGCTCGTCCCGCCCACCCATGTGGCTGAGTCCTTGCGGTTGCCCGATGGTGGGACTGCGGTCGTCCGGCGCAGGGTGATGCTGGTGGATGACCGGCCGGTTGAACTCACGGACTCCTACTACCCGTCTTCCCTGGCCATCGGCACCGGGCTTGCCCAGATGGCGAAGATCCGTGGCGGAGCGCCGACGCTGCTGGCAGAGCTCGGTTACGCGCCGGCTGAGGCGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 335042-338098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEP01000001.1 Streptosporangium roseum strain NRRL B-2638 contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 335042 29 100.0 32 ............................. ATCATCGGGGTCCAGGTGTGGTTCCGCGCGGC 335103 29 100.0 32 ............................. GCCGCGTACACCTCGGTCTCCGTCGCGGCCGA 335164 29 100.0 32 ............................. TTGAACATGACGCCTCCGAGACATGCGAAGGG 335225 29 100.0 32 ............................. AACAGCCGTCCCCGGCCTCCCGAGATGTCGTC 335286 29 100.0 32 ............................. TCCCTCCACTTCGACCGGAGGTAGGTCACCAT 335347 29 100.0 32 ............................. CAGCCAGAGAGAACGAAGCGAAGGAGGAAGAT 335408 29 96.6 32 ............................A GAACATCCGGCCCAGCCGAGCTCTTACCGCGC 335469 29 100.0 32 ............................. GAGGGAGTTGACCCCGGCAACCTCGCCTGATC 335530 29 100.0 32 ............................. GCTGCCGGCGCGCTCGGCCCCGGAGTGCTGGG 335591 29 100.0 32 ............................. GTCAGGTCGCGGCCGTGTCGGCGCCAGGTGGA 335652 29 100.0 32 ............................. GGCTCAAGGCCCGCGACCCCAAGCGCGTCGCG 335713 29 100.0 32 ............................. CTGCTGCTGCTTGTCGCAGCCGTGGGCAACAG 335774 29 100.0 32 ............................. GTGAGGAGCCACGTCTCAGCAGTGACCAGGCC 335835 29 100.0 32 ............................. ACGGGCGTGCCGATCCTGCATGCAGACGCGGG 335896 29 100.0 32 ............................. TTCCCGAGTCCACGCGGACTCGACATGGCCGC 335957 29 100.0 32 ............................. ACCCCATCAGGCCCACGCGAGACCTTGGGAAT 336018 29 100.0 32 ............................. CTGGTCGGGCGGAAGTAGACGCTGAGGGTGTA 336079 29 100.0 32 ............................. CCGCCCGCCTCGACGGCCGCCAGCTGCGCGTC 336140 29 100.0 32 ............................. GGTCGCGGCGTAGGACGTCGCCCGGTCCCATT 336201 29 100.0 32 ............................. ACCCGGCAGATGGTCACTGTCGACCTCCGCAC 336262 29 100.0 32 ............................. CCGGGTGTGATCTTGCGGGCGCTGGTCGACGA 336323 29 100.0 32 ............................. ACGGCAGCCAGCGGTAAGGGTGAGACGGTTGC 336384 29 100.0 32 ............................. GCCACCTGGCCGAAGCTCTGCGGCCTGTAGCT 336445 29 100.0 32 ............................. GCCACCTGGCCGAAGCTCTGCGGCCTGTAGCT 336506 29 96.6 9 ............................C GTTGAGCCC Deletion [336544] 336544 29 96.6 33 ............................A CAACACTCTCCCGGGTACGGCGATGGGATCATG 336606 29 100.0 32 ............................. AAGCCCGGCGGGCTGCTCCGCTGGGTCTCTGG 336667 29 100.0 32 ............................. GCCCACACACTCACCGTGGACGGCGACACGCT 336728 29 100.0 32 ............................. TCGGGGTAGCGGTTGCCGGTCCGCTGGACCTC 336789 29 100.0 32 ............................. AAGGCCGCCGCCGTCAGGGCCGCACTACCAGG 336850 29 96.6 32 ...................A......... GCGGTCAACGCCCTGCTCGACGAGCTCGGCCT 336911 29 100.0 32 ............................. TCCACCGCGCACTCTAGATCGGTCTGCGTGTC 336972 29 100.0 32 ............................. AGTTGATCTCCTCCGAGAGTGAGCTGTTGCGG 337033 29 100.0 32 ............................. GCGCCGGAGGGCCGGGCGACGGTGGGCCGGTG 337094 29 96.6 32 ............................C GCCAGCAATGTCTCCGTGTATCCCCGGATCAC 337155 29 100.0 32 ............................. GGCTCAGATCAGGCGATAGGTCTCCTTCGGGC 337216 29 96.6 32 ..........T.................. GAGTGAACGCATGATCTACCACTCTCACTCCG 337277 29 100.0 32 ............................. CCCTTGGCGGCGTTCTTGCGCTGCTCGATCGC 337338 29 100.0 32 ............................. GCCAGCAGCACCCCACCACGGTGGTGGCAGGC 337399 29 100.0 32 ............................. TGCATGAACCGGATGCTCTGGCGTTTGCCGCC 337460 29 100.0 32 ............................. CCCGCCTTGGTCGGCACCTCCGTACCGGCTGG 337521 29 100.0 32 ............................. CCGCCCCCCACGCTGCTGACGCTCACCGCCGA 337582 29 100.0 32 ............................. CCGTTCGGCATCGCCCCCGGCTGGGTGTGCGC 337643 29 100.0 32 ............................. TCCTCGACTCCAGCGGCGTCCGCCAGGCCGGT 337704 29 100.0 32 ............................. TCGTTCGGGCGCTCGATGATCGCGGTGGTCAC G [337726] 337766 29 96.6 32 ...........A................. GTGATGTAGGTGAATCGTGTCGGCACGCCGAG 337827 29 96.6 32 ...........A................. GCGGTCTACACGCGGCCGGAGCTGGCCGACGC 337888 29 100.0 32 ............................. GTGATGTAGGTGAATCGTGTCGGCACGCCGAG 337949 29 100.0 32 ............................. CCGGTCGACGCGGCCGTGGCTGCCCTGGACGA 338010 29 100.0 31 ............................. CGGCGATGGCCGCCGGGGGGCGGAACGCGGG 338070 29 93.1 0 .G....T...................... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.3 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : CCAGGCGTTGATTGATCCGAGCGAGGAAAGACTCTCCCTCACCGACCGAAAGAGTGATCTCGTGCATCTGTGGGATCCCCAGGCGGGGGCGCTTCCAGCGGGTGTGAACTACGGATCCGAGACCTTCGATTTTCTCCCGGAGTAGCCGATGGCCTCGATGGTTGTCATCTCGACGACCGCGATCCCCGACCACGTCGGAGGGGCGTTGTCCCGTTGGCTGATCGAACCCTGCCCAGGACTTTTCGTCGGCACCGTGTCGGCCCGGGTCCGCGACGAGCTCTGGGCAGCGGTCAGCGCGAGTGTGGGAGACGGCCTGGCGGTCCTCATCCACCCGGCTGACACGGAGCAGGGGTTCGCGATGCGCACAGCAGGGCAGCGCCGCCGCCACGTGATCGACTTCGACGGCCTACAGTTGATCAGATTCGCCGCTGGTGAGATGAACGACGCGTCCGGCTCGTCGAAAACTTCAAGTGCGATTGTGAAGTAGCAGGTCGGGAAGT # Right flank : GCCCCGGACCCCCTCGGCCGTCCGCGTCCTGGTCCTCCCCGCGTACACGTCCCCAGAGGCGCTCTCGTTACGGTGACCGCGTCCTCCCCGTCCCTGGGCTACTTACAGCCCAGACCACCTCAGTCAATGTCCAGCCAAGGAGCGTCTTGAGAACCCAGGAGATGGGCGAAGGGTTCGAGTCCCCCCTCGGACACACTTGGTTCACCTATGAGGTGCTGGTCGGCTCTTAAGCTGGTCAGCACCTTTCTGGTTTCAGGCTGATAAGTGAGCGTGAGACCCGATCCCGCGTAGATCCTCGTCTTGCGGGCCGTCTCCGCTTCACCCGGGATCCGCGCCATGCCGCCCAGCGCACGCGTCATCTCGACCGGCCCGTCCCGGTCGAACCGGCGTGAGCGCAGCCGAGCACGCCGGAGCCGCCGCTCCGCCCCGCCTTCCCGGCCTGCTCCTCCCGGATCCAGCCCGCGACCACCACCGGATCGGCCCCGGCCTCCAGAGCCACC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //