Array 1 292197-291968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOQK010000001.1 Clostridium sp. NSJ-27 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 292196 31 100.0 34 ............................... ACTGAAGTAAGTAAAGCAAATATGAACCAAAGTG 292131 31 100.0 35 ............................... CACAGGGATAGCCAACAGCTTACTAGCGCAATGTT 292065 31 100.0 36 ............................... CTTAGCCATTTTTCCTGTCTCCCAAAATGAGAGCGA 291998 31 83.9 0 ........................G.A.TCT | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 96.0 35 GTTACAATACACACCCGCCAGGGTACGGAAA # Left flank : TGCAAATGGACAAAAAGGGCTTTATTTTATAAAAATCACCAATGATATCCAAGGAGGAGTTCCATAAAAATTCCCAATTTCACTATTGAGCATAGCAAGCTGTCCATAGTCTAATAATGGAAAATTTCCAGCAGAGCAACGCTTCCTCCTCACAAGACATGTAACACACCTTAGCAGTGGATAATTAAACCGTAAAAACTAAAAAATATAGCTGGATAGAATCGTCTATCAAAAATTGCTTGCACTTTTTAACATTTAAGATTATAATAAACAGAGATAAAATTTTTGATTAAATAAAGATTATTATATCCAATTTTAAACATCATTGCCAGTGCGAATGGTAAGTAACCATAAAAAATACGTATTGTTCGCACTAGCTATAACTTGTAGCTTTGTGACTAACAAGTCGATTTATTTAGGTTAAAAGGAAAGTGGAAATAATCAAGTTCGCACTATAATGGCTGTGAACCCCCGAAAATCAAGGGCGCATTCATGCCGCA # Right flank : CATTAGATTAGAGATACACCATCTCGAAAAGAAGCTTTTTAACCCTTTTTATCTCCACATTAAAAAGCTACTGATAAGTTTAAGATTAAGCCTTCCATGGATGACAGATCACATTTTAGGCAGCAAAAAAGCTGGTATTACGATTTTGTAATGCCAGCTTTTTTGCGTTGTCCATATAGATAATTGTTATGCCACTCCACCTTATACAATAACCCAAAATCGAACATAGACCTTTTTCCTACAAAATATAAAGGTAAGCTAAATGAAATATTCCTAGATTTTTATCGTGTTTTTTTATTGTAGTATCAATAAATGATTGAAAGTAAGGAAAAGTAAATTTATCTTTTGCTATAAAATTATACCAAGAAATCAATTCATTTCATTCTTTCTTATTGATGTATTCTTCTTTTAATATTGAAAAACACAGGTGGTCTTTTATATCAGTTGGGGAAACTTGCTCTGCCATACGTAAATACCCCTCATAATAAAATCCAGATTTC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATACACACCCGCCAGGGTACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 876791-877160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOQK010000001.1 Clostridium sp. NSJ-27 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 876791 33 100.0 32 ................................. CGAAACGGCTCGACCATTTGTACCAGTACAAG 876856 33 100.0 34 ................................. ATAAAAATTATGTACTATAAGGCGGTGAAACATG 876923 33 100.0 34 ................................. AAGAAATTTATAAACAAGCAGTACCAGAAAACTG 876990 33 100.0 37 ................................. GAGTTTGAACTTACATATCACGATCAGTCGATAGATA 877060 33 93.9 35 .A............A.................. TATTCTTTAGGTAATCCCGAATTTTTGCCTATTAA 877128 33 93.9 0 ........T...........T............ | ========== ====== ====== ====== ================================= ===================================== ================== 6 33 98.0 35 GTCGCTGCCCCCACGGGCAGCGTGGATTGAAAT # Left flank : ACGGTGGATATGTAGCGGATACACCTGGATTTTCCACGGTGGATACTATGCAATACGAAGTGATTACAAAAGAAGAATTACAGTATTGTTTCCGAGAATTTACGCCTTTTTTAAACCAGTGTAAATTTACGGGATGTTCTCATACAGTAGAAAAAGGCTGTGCAGTGCTGGCAGCGCTCCAGCGTGGGGAAATTGGCATTACCCGCCACGAGAGTTATTGCCAGATGTATGAGGAGGCAAAAACAATCAAAGAGTGGGAACTGAAAAAATAATATTTGGAATTTATGCGTTTCAACTTATTTTTTGATGTTTCTAAAACAGGTATTAAAAAAGATTAATCGTTGGTGCGAACCATAAGCTCTCATAAATTCTCTATGTATTCGCACTAAAAAATACGGAATATGGCAAAAATTCATCCTGATGTAGCGGTGATATTTTGATTTTTTACACTAACCCTCCAATATCTAGGGCGGAAATTTTATAACTTACTATATTTTGCG # Right flank : TTACAAAAATGCTCTTCCCAATGAAATTCCGCACAGTATTGTTGTTCTTATGGCCAATATAGAAATAACCATACGCAGAGGTATGAGATGAGAGAGGTTTTCTTTACGTAAATATGAAAAAACTCCTAATGATTTGTTCCATTAGGAGTTTTTTATTATAACTTGATTATTTTAAATATTTAGAGAATGCTTTTTTCGGGTTGGATGATACATTGTGTAGGAAATAAAGCAACCATACCAGAAAGCAAATAAGAGCCAACCACTGGTTTAACAGGCTTAATCCTGTTCCGACTACAAAGATAATAGATGAAACCACAAAAATGATCGCATGTCCTTTGCTAATTTTCTTTTTATCATATTGTTTTTGTTCTTCCTCACTTAAGGTATTAAAACCGGCAACCAAACCGGCAGCTTTTTCCCGCCCAATGAAAAAAGGCAAGGAAATCAATAACATTGTAATAGCCATAAGGACGCAGATTATTGTGCCAATATGGGTGGAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCCCCCACGGGCAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1051272-1050502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOQK010000001.1 Clostridium sp. NSJ-27 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1051271 33 100.0 33 ................................. AGAATTGAATAAAATAATATGGAGTGAAAAGCA 1051205 33 100.0 32 ................................. ATTTGTACCGCTATACTGTTGCATGGCAAGAA 1051140 33 100.0 33 ................................. ATTCCATGCTGGATGGCAAAAAACCAGCGGCAG 1051074 33 100.0 34 ................................. AATGGCATATCAAGCATGAGGCATGATGATTTTG 1051007 33 100.0 33 ................................. TGTATGGACTATGACGGGCAGGAAACCGTAGAG 1050941 33 100.0 35 ................................. CCAACTGAACCTTTTTGTTTTCCAATTCGTCCAAC 1050873 33 100.0 33 ................................. CCTAACATTATCTTTAATACAATGAGGTTTAAA 1050807 33 100.0 35 ................................. GATATAATAGTAATATCGTCAAAAAGATAAAACCC 1050739 33 100.0 34 ................................. AGCAATGCGTGTTTGCAGTCTAAACATGTGTACC 1050672 33 100.0 36 ................................. ATTTTGTGTCCCTAGTGGCATAACCGTTGGGACAAA 1050603 33 100.0 36 ................................. ACACAAAGTCAAGTTAATAGGAGGTTTTTACTATGC 1050534 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 100.0 34 GTCGCTGCCCACACGGGCAGCGTGGATTGAAAT # Left flank : GGATGAATACCCAGTATTTTTGTGGAAGTAGAGGAAAGCAATGTTGGTTTTAATCACCTATGATGTGAACACCGAAACAGAAGCGGGTAAAAAGCGCCTGCGTAAGGTGGCAAAAGAATGTGAAAATTATGGCCAGCGGGTGCAGAACTCTGTATTTGAATGTATCATGGACGCAGCCAAAAGCCGTGAAGTAAAAGAAAAGCTCCTCCGTCATATTGACGAGAAAAAGGACAGCATCCGCTTCTATTATTTAGGAGAACAGTACCAGAAAAAAGTGGAGCATTACGGGGTGAAAGATAGCCTGGAACTGGAAGGGGAGCTCTTAATTTAAGCTTGTGGGTTGGTGCGAACCATAAGCTCTCATAAAAACCCCATGTATTCGCACCAAAAAATGCGGAATATGGCAAAAATACATCCTAATTAAGCGATGTAATTTTGATGTTATCAGAACATTGCCGCAATATCTAGGTTGTAGTTTCTCATTATTGCCATATTTTGCG # Right flank : TGTTCCTCGATTTTCATCTTATGTAGGTCTGTTATTTTGTGGTTGCCGTATAAGGAATGCGGATTAAAAGGACAAGCCGATAAGCGAGCTGGAGTTTTATTATATCCTTCTTAAAATAAAAAACACGGTATCCATTTGTTGGAAACCGTGTTTTTTATGCCCGTTTTCTATGTTCTGCCAGCAAAGAAATCAACAGATAAATTCCAAATGCCAACAGGGTGAAATTCAAATAATACGCTAAATATCCTCCAAAAATAAGCAACAATAGGCAGAATCCCCAGGAGCATATCTGAACGGACCGATAGGCAAGGTGGAACGGGAAGATACATTGGAACAGCAATTCCAATAATTTCCCTCCATCCAGGGATTTTACTGGGAGCAGGTTAAAACAGCCAATCAGTAAATGAATACTGGCAAACAGATTTTGTTGCACTGCCAGATGGAGGAAGGATACCAGAAAATTCACCCCGCTGCCCGCCAGAAGAATCACTGCTTCCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCCCACACGGGCAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //