Array 1 14-2911 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDB01000007.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIB2 .SLX_12186.D709_D506.HJ72NBBXX.s_1.r.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 75 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 137 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 198 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 259 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 320 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 381 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 442 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 503 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 564 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 625 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 686 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 747 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 808 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 869 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 930 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 992 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 1053 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 1114 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 1175 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 1236 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 1297 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 1358 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 1419 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 1480 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 1541 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 1602 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 1663 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 1724 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 1785 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 1846 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 1907 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 1968 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 2029 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 2090 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 2152 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 2213 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 2274 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 2335 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 2396 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 2457 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 2518 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 2579 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 2640 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 2701 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2762 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 2823 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2884 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGTAATTTTTGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1186-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDB01000002.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIB2 .SLX_12186.D709_D506.HJ72NBBXX.s_1.r.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1185 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 1124 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 1063 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 1002 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 941 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 880 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 819 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 758 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 697 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 636 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 575 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 514 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 452 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 391 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 330 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 269 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 208 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 147 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 86 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TCGCCCACCCTGAGTATTATCACTACTCCGGACGTGTTCCCCGCAGATCGGAAGAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18440-17741 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDB01000002.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIB2 .SLX_12186.D709_D506.HJ72NBBXX.s_1.r.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18439 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 18378 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 18317 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 18256 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 18195 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 18134 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 18073 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 18012 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 17951 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 17890 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 17829 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 17768 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //