Array 1 106543-105901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRF010000020.1 Streptomyces sp. PHES57 20_length_177213_depth_1.03x, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106542 29 100.0 32 ............................. GCCACTCGGCAGATCTCGACCACGGGCGTGCC 106481 29 100.0 32 ............................. TCCCCCGCCCGAGGCCGATCCTGTGCAGTGGC 106420 29 100.0 33 ............................. CGGCCTGGAACGGGCCGATGAGCTGCGCCAGCA 106358 29 100.0 32 ............................. TGACCGACACCGACCCGGCACAGCCGGCATCA 106297 29 100.0 32 ............................. TCCTTGTGCTTGGCGCGACTGTAGGGGCCCAC 106236 29 96.6 32 ................T............ TCTCCTGGACGTCCACGCGGACGCCTACGCCG 106175 29 100.0 32 ............................. AGGCGGCGGTGCCCGGTGGGCCGCTCGCCCGG 106114 29 100.0 32 ............................. GTGCGCGGCCCCGCCGGACGCGAGAAACCGCG 106053 29 96.6 32 ............T................ GCCACCCCGGTCGTGGTCGATCCGCGAGTGCT 105992 29 96.6 32 ............T................ GCGGTCGACCACGCATAGGCGTACGCGAAGGG 105931 29 79.3 0 ......T..........CA.A.C...T.. | CC [105911] ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CGACTCCGTCAAGCTCCGCACCGACCACGACGGAGAAGTACCCGGCGGCCTCAACCACGGCGAGGACCCCATCTGGTGACCGTCATCGTCCTCACGAACTGCCCCGCCGCGCTACGGGGCTTCCTCACCCGCTGGCTCCTCGAAATCTCCCCAGGCGTCTTCATCGGCCGCCCCTCCGCCCGCATCCGCGACCTCCTCTGGGACGAAGTCACCCAATACTCCGGCAAGGGCCGCGCCCTCCTCGCCCACACCACCGACACCGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACCCTCATCAACCGCCCCAAGCCCCGCCTCTCCCCGAAGCCACCACCGACGACGGGTTGGAGCAAAGCAGCGAAGCGACGCCGGTTCGGCGGGGGCCCGAAATGAGAGGTACGCACGATTCAACGAAAGTGAACCCCACGGCGGCCCCCGCCGGATAAACCCGCAGGTCACCGAGT # Right flank : TCGCGCGGGCGAGGCTCGGCACCGGGACCACTTCAACGCATCAGTCCGCCGCGCAGGCTTCTCGCCCGTCGCCGCTCCAACCGCGAGTCCGGATGGAGCGAGGACGCAGTCGGCCGCCGTCGGCGGGTTCATCGGGCGTTTGTGCCAGCCCACCGGCTCGTCCCGCATCTCGGGGTGCCATGCCGCGACGGCGGATTCGACCGCCTCGGGGTCGCGCGGGAAGCACCATGCGTAGTCGTACCCGTAGGCATGCTTCCGAACGGCGAGGAGCCGGACGCCGAAATCGCATCCACAGCCACAGGTACATGTGGTGCGGTCGGTGCCGAGGACGTAGTCCTCCCATGTCTCGTCGCGTACGCGAGCCGACCGCCCGGCAGCTTGGTGACCTTCACGTGTCTCATCGGGATCGGTGCCGTGCGGCTCGGCGAGCCGCACGGGGGTCGGGGGCCGGTCGCGGGTGACCAGAGCGCGGGCCACGGCCCTGGCACCGTAGCGGGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGTATGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116058-116635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRF010000020.1 Streptomyces sp. PHES57 20_length_177213_depth_1.03x, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116058 29 100.0 32 ............................. CTGGCGGTCTTCCTGGCAATCATCGTCATCGT 116119 29 100.0 32 ............................. GTCCGGAGGGTCGCGCGGATGATCCTCACCAC 116180 29 100.0 32 ............................. CGCGCGAACGTGCGGAGACTCGGGAAGAAGAC 116241 29 96.6 32 ............................T TGGGCGGCGGGCCGGTCATCCTGATGGTGGCG 116302 29 100.0 32 ............................. ATCTCCGAGGGCGAGCGGCTGTGGTTCGCGCT 116363 29 96.6 32 ............................T GAGGAGAGACCCCCCACCACAGCGTTGGCGCC 116424 29 100.0 32 ............................. TGCGCCCCTTCCGCCCGGTGTGCAACCACCGG 116485 29 96.6 32 ..........C.................. AGCGCGGTGCGGGGATCGTCGAAGGCGACGAG 116546 29 96.6 32 ..........C.................. GATCCGCGTCTCCCGCGACTCCGGCCACACCT 116607 29 89.7 0 ..........CG.C............... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTGCTCCCCGTACGTGCGGGGATGGTCCC # Left flank : CCGGCGTCGCCTTCCCCACGTCGTGCACCCCGGCGAGCCATACGGCCAAGGCACGGGCGTCGGCGAACCCACCGGGAAGGGCCTGGGCAACGAGGCGCTTCACCTGCTCGGGCAACCACCGGTCCCAGAGCAGCCCGGCCGTGGCAGCGCTGTCGGACATGTGCCGCCAGAGGGGTAGGTAACCGTCATCCGCATAGGACGACTTGGCCCACGCCGCGCGCGCCCCCGGGGACAGCCGCTTACCGAGCCGCCGCCCCCGTACTTTCTCCCCCACCGCCTACCTCCGCTGTTCCCGGCCCCGTCACACGAATGACGCCGGGCTCGAACGCCACCCCAACCGGCAGTATGCGCACGCGCGGAGCAGTCGTGGGGAGAGTTGACAATATGGACCGGAACTACTCAGCCCCGCGTCCCTTCTGAACTGTTGGTGAGGTATGCACCATTCAACGAAAGTGAATCCCACGGCCACCGGCAACGGATAAACCCGCAGGTCACCAAGT # Right flank : CCTCCACGGGCCGGGCCAGCAGGGCAAGTCCAGACCTGCGGAAACGCTCCGGAGGAACGTTTCCGCAGGCCAGAACGATTCTGCTGGGTGGGGCGGGTGGGACTCGAACCCACGGCCGACGGATTATGAGTCCGCTGCTCTAACCGGCTGAGCTACCGCCCCGTAACGGCGCGCCGCGCACGAATGTGCGCGCCGTCTGCCGCAGCATAACCGTTCATAGGATCTGCCGCCCGCGGCGGGGGAGATCTACGCAGGTGAGGACCCCGGACAAGGGGTGAACGGTTCCCGCTCCCGCCGACTTCCGCGAAGATCGCCGGAAAAGGGCGGAAAAGCGCCCGTCGGCTCCGCCCTCCCCGGCCGCCCCCTCGCCGCGCGGACAGCACCGGCCGCATCACCGCGCACCGGCCCCGGCATACCACCGCGCACCGACCCGGTCGTACGGCACCGCCCCAGGCATACGAAAAGGGCCCCCGAGGGGGCCCTTTCCTTCTTGCTCCCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTACGTGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCACGTGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93562-92615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRF010000024.1 Streptomyces sp. PHES57 24_length_120365_depth_1.01x, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93561 29 100.0 32 ............................. AGGCCGAACAGCCAGGCCCAGACCTTCCGCCA 93500 29 100.0 32 ............................. CTCGCGATGCTCCGGGCCCTGCGGCAGGTCAA 93439 29 100.0 33 ............................. CCCCACAGCCCGTGCACCGAGACCGCCACACCG 93377 29 100.0 32 ............................. GTCGTCCGCGAAGACCCCGCGACGGGCGCCTT 93316 29 100.0 32 ............................. CCTCCGGCCGAGATGACATCGCCCAGGTCGGT 93255 29 100.0 32 ............................. ATCACGCGGCCTCCGTGTTCCGGTGGTCGGGG 93194 29 100.0 32 ............................. TCGCCGCCGACATCGTCGTGCAGCTCGTCCCT 93133 29 100.0 32 ............................. TCGGTGTGCAACCTGTCGGAGCGGTGCCCAGT 93072 29 100.0 32 ............................. CACGACGGCTCTGTTCCTGGGGCAGAGCTACC 93011 29 100.0 32 ............................. CAGTGGAAGAACATCGTTGGGACCACCCCTGT 92950 29 100.0 32 ............................. TGACGGCCGTAGCGCCCAACACCGTGCGGAAG 92889 29 100.0 32 ............................. AAGGGCGTCCGCGGCCTGTGGAACACGGCAGC 92828 29 100.0 32 ............................. GTGGCCGTCATGCCGTGGGTGCGGGCGGTGTG 92767 29 96.6 32 .................C........... TGCGCGAGGAAACCGGTGTCCACATCCGGGCC 92706 29 89.7 32 .................A..TT....... ACGAGGCACGGATGGGCTCCGCCCAGTACGTG 92645 29 82.8 0 .....................GA..G.TT | CA [92625] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.1 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GACGGCGACGTCCACATCGACAGCGGACGCAACCACGGAGAAGAGCCCCTCTGGTGACCGTCATCATCCTCACCACCTGCCCCGCCGGACTCCGCGGTTTCCTCACCCGCTGGCTTCTCGAACTCTCACCCGGCGTCTTCCTCGGTGCCCCCTCCGCCCGCATCCGGAGCATCCTGTGGGACGAAGTCCGCCAGTAGGCCGGGCAAGGCCGCGCACTCCTCGCCTACCAGACCGACAACGAACAAGGCTTCGCCTTTGAAACCCACAGCCACCCCTGGCACCCCATCGACCACGAGGGACTCACCCTCCTCCACCGCCCCACCACCCCCAGTGCGCCGGCTGCCGCTCCCGATACCCCACCGCGAGGCTGGAGCAAGGCAGCCAAACGCCGCCGCTTCCGACGCACATAACCCGCTCAGAAACAGATGCCCCATATGCCCGACTCGGCGAAAGTGAGTAAAACCCGCCCCCACCCGCAGTAAAACCCCACGTCGCGCCCT # Right flank : AGCCGTCGCTGCGTGGCTCGGTCCTCCGAGGCGACCGCTACCGTTGCCTCCTTCTTTCTGCTCTCACCGGCTCCCGTCCTGCGGTTCTGAGGGCGAGGCGGTGCAGCTGGAGTCCTCTGCGTCCTCAATCGCCGAGTGGCCTCGCGGCCCCGGTAGCCGGCGCTCGCGTTTGGTGCCGCTTGCTACGTGGGCCGGTATTGATCGGCCCGTGCGCGAGAGGCAGGGGCCGATCATGCGCGCACGGGCTAACGAGGTGATATCCCCTATACCCTTTTCGTTGGCAATTGGAAACTTCCGTCAGGGTCCGTCTTCGACAGGGGGTGCACCGGGGTCCGTGAAGTACACCGCGCTCGGGGAGCGGATCAAGCAACTGCGGGGCCGGATCATCCAGAACGCCCTGGGCTTCCTGTCCGAAGCGCTTCGGGTCGCCCGCGCATCTGGGATGCCGGGGAAACACCCCGACGAAGCCGTTGTCGTGCTGGACGACGACCAGGTGGGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 343080-343474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRF010000003.1 Streptomyces sp. PHES57 3_length_476513_depth_1.01x, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 343080 28 100.0 33 ............................ CACCGGCCATTTCACGTCCATGCGCGTATCCGA 343141 28 100.0 33 ............................ CCGTCCTCGGCCCCGGGCCCGCACCGTCCTTAC C [343146] 343203 28 100.0 33 ............................ CAGCGGCGGGTCGCTGCGGGACGCGGTCGACCT 343264 28 100.0 33 ............................ CGCGGCCGGGTCGTCGCCGGCCAGGGCGGTCTC 343325 28 100.0 33 ............................ CCGACCCCGCACCCGAGTTCCGCGTCGACAGCA 343386 28 96.4 33 .........................C.. CGACGACATCGAGCTGAAGCTGCCCGGTCACCG 343447 28 89.3 0 ............T...T........C.. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 33 GTGCTCCCCGCACGCGCGGGGTTGGTCC # Left flank : GCCGTGGCCGCACTGCTGATGCTGCACCGCCTCCGGCTGAGCTGACCAATCGGAGAAGTCGAAGACGAGGGGCGATCGAGTGCGCGGCAGCGGCCCCGACCTGTGGTCCGGCGGCGCCGCCTGATCTGCCTACCGGGCGACGGCGCCTGCCAGATCCACGACCAGATGTGCACAGCCACCAGCAGCGCCCACCGGCCCCAGTCCACACGGCGTCGGTCCGCGTTCATCTACCCACCTCCATGATCCGGTTCCCGGGACCGTAGGGCAGGATGCGAGGTACCCGGAGCGGGGTATCCACAGACAGGCCGGATCGTCATACCGGAGGCTCACCCTTTGGATAAAGGGCTCGTCGGACTGGAGGCTGACCAGCCCTCGCAGTGGCCCAGCTGACACCTTTCGGCAGGGTTTCGACCCCTAATGGGAGAATGCCTGGAAAGTCCGAGTCGTGGGAAGTGGTTAGAATCGGCCCTCGACTGGCGAAACGCTGCTGGTCAGCTCCT # Right flank : CCATGTTCCGGACGTCCGCGTCAGTGATGGTGAAGTGCTGCCCGTCCCCGCATAGTGGCCCCGCCGGCACCACTCGGCGGGGCCACCCATCCACAACAGCCAGCACGGTGGATAGGAACACCCCCGAGCCTCCCACCACATACGGCCAGCCCCCCCGGAAACACGAGAACGCCCCGCCACCGGCGGCGGGGCGCCTCCACACCAGGTGCCGCTACCGGGCGGCGAGTTAGTGCAGCGTCAGCACCAGCGCAGCCACCCCGGTCAACGCGGCGATGGACGGAAGAGGCCGCCGACCCCGTTTCAGGTCCTCGACAGCGACCCGCAGGTCGGCGATGTCCTGATCGTGGCTCTCGCGCAGCCGCCGCGCGTCCTTCTCGGCACGGTCGGTGCGCTCCAGCATCACCTTCAGGCGCCCGCCCAGCCGGGCATCACCTCCAGGCGCCCGCCCAGCCGCGCGAAACCTGCACGTAGGCGCTCGTCGCCGCTGACGACGGAGATGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //