Array 1 1445466-1444991 **** Predicted by CRISPRDetect 2.4 *** >NC_021081.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1445465 36 100.0 39 .................................... CATCCATCACGCCCAACTTGTTGATTTCGATTTGCACTA 1445390 36 100.0 40 .................................... AATTGCAGGTGAAGCCTGTGTACTTTGGCGACCTTTTGGG 1445314 36 100.0 40 .................................... ATGGTTAGCAGCGCCAGGCGAATATTACACTATGGCACGA 1445238 36 100.0 34 .................................... TGGCGTGAACGCGTTTGCACGTGCCCTTGGTTCC 1445168 36 97.2 36 ...................................A GATAACGCAGTTTGCTCTTCATATCTCCTTCCTCCT 1445096 36 100.0 33 .................................... CCAGCCCGCCTGCTCGCCGCTTGCTGCTGCCAG 1445027 36 91.7 0 ................................GT.A | A [1444993] ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 98.4 37 GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAACG # Left flank : GGGTAGCCGCCTCGGGCTTGGGCAGCGCGTCCAGCAGGTACTGCTGAATGGCCGCCCGCACCTGGGCCGGAGAAATATCGGCAACCATGCCCAAATACTACCCCCACCCGCCCCCGCCCGACACCCGTTACAAAGAGCGTAAACCCCGCCCAACCCGCCAAAAATGCCTGCGCGATCGCACCCCACCTCACACAAAACCCAACCCGAAGCCAGTCCAGCACAGCACGGAAACCCTTTCACCAAATAACCCATTATGTTTTGCGCAAAATGCTATAATACTTTCGTCGAGCAATTCGACAGCGCACTTTGAAAGCCAGGTTTTGCGATGAATAAGGCAAACCCACGCCACAAAAAATCTAAAAGTGCGGGAAAGTAAGCCCTCATCGCAAAAAACGCACTTTTTACCCCAGTTATCCACAGGGGGGCTGTGGATAACTCCAGTTTCTCATAAATACCCCCTCCAGCACCCCTGTACAGCACGGTGTTTAACGGGGTATGCT # Right flank : CTCCCAAATGGCTGCCTTGGTGAGCTCGGCTGCTGTTTGGGGATTTGGCTTTATTACCAACAAAGCTTCTAAAAATGGAGTAAGTTTTAAAAATGGCAAAATTGGTTCGGAAATACAACCCCTACACAAATAAATTCGAGATGGTTCCAGAAGACTGGGTTTTGCGGTACAACCCTTTCCAAAACCGCCACGAGTTTGCCCCAGCGGACAACAGGTTCTCGTATCTGCCAACCAACGGCGAGTTTTCGGCCATTCCTGCGCCGCCGAAATACAACCCGCACCAGGAGACCTTTTCTCCCGGCAAGCGGGACTGAGAGCCGGTGTACAACCCGCTCGAGGGCGAGTTTGAAATACGGCCAACAAAAAAGGACGACCCCGAGTGGTGAAGTGCCGTTTGGGGCGTTTGTCCGGCAAAACCCGGCTTTGTGCGCGGTGGAGGTTGTGAGGGGGGTGGGGGTGCGCTACACTGGGTTACAGGAGGAACCAACATGGGCATTCTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1501133-1505688 **** Predicted by CRISPRDetect 2.4 *** >NC_021081.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1501133 29 100.0 31 ............................. AAAGCACCCTGTCCTCAACGGACCGTTCAAC 1501193 29 100.0 33 ............................. GCCGATGCCGTGTCCCCCAGCACGGTCAGCAGC 1501255 29 100.0 33 ............................. AGCAAACGGGAAAAACGAAAAGAGCAGCGCCGC 1501317 29 96.6 32 ............................A GATCCGCCCCACTTATCAATCGGGGCGTCCCC 1501378 29 100.0 32 ............................. AATAGTGGCCACAGCCACAGTAGCCACCTGCA 1501439 29 96.6 32 .....T....................... ACGTATACTGGACCTACAGGCTAGTGGAGCGG 1501500 29 100.0 31 ............................. GGCAGAGCGTCGTTGCACAGCCCAGCGTCGC 1501560 29 100.0 33 ............................. AAGTCCCTGAGCCGTTCTTGATTGTCCCGATGA 1501622 29 100.0 32 ............................. GTGCCGGATCCGATGTGCTGGGTGTAGAGCTG 1501683 29 100.0 32 ............................. AGCGCCTGTACGGCAGCCAGGTGCCCGGCGAC 1501744 29 100.0 32 ............................. GAAATCCTGTAAATATCCCCTGACTCGCTAAC 1501805 29 100.0 32 ............................. AGCGTACCCTATCGGCACCGAATGTTTGCGCA 1501866 29 100.0 34 ............................. AGGTGACGCATGAGAGAAATACCCATCCGCGTCC 1501929 29 100.0 32 ............................. GAAATCCTGTAAATATCCCCTGACTCGCTAAC 1501990 29 100.0 32 ............................. AGCGTACCCTATCGGCACCGAATGTTTGCGCA 1502051 29 100.0 34 ............................. AGGTGACGCATGAGAGAAATACCCATCCGCGTCC 1502114 29 100.0 32 ............................. GCGGCCTGCCCCTGGGCCGCCCCCGAGCCTGA 1502175 29 100.0 32 ............................. CTCTTGTAGCGCGTTTTGAGCCGCCCGGTACA 1502236 29 100.0 32 ............................. AGAAAGCGCAGCACCGGCTTGGGCTCGTCGGA 1502297 29 100.0 32 ............................. AACTGCACGAGCGCGAAATGCTCGGGCAGGAC 1502358 29 100.0 31 ............................. CTCCCTCAGGCCCTCGACTGGTACCCGGTGC 1502418 29 100.0 32 ............................. CCCTGGTCGGGCAGGGAGCCCCGCCCTACAAC 1502479 29 100.0 33 ............................. GGCCATGAGATGCTCGAGCGGCCATGCGCCAGC 1502541 29 100.0 32 ............................. TCTTAAGCCTGATCTTCGGCCAGGAGTACGCC 1502602 29 100.0 33 ............................. TCCTGTAGCCCTACGTCCAGACCGAGGGTCTTT 1502664 29 100.0 33 ............................. GTGGACATCGGCTTCAGCAACCCGGCCCTCGAG 1502726 29 100.0 32 ............................. GATGGGGCGAAGTCCCGATCGAGAAGTCGCCC 1502787 29 100.0 33 ............................. CTCTGCGCCGCCTCGGGACTTGTGGGGGTTGCC 1502849 29 100.0 32 ............................. ACGGCCTGACCCTGACCCTCTCCATGCGCGAG 1502910 29 100.0 31 ............................. CATGAATATCCGGATTCCCACTTTAGCAGGG 1502970 29 100.0 33 ............................. GTCATTCTGGCGCTGGGCCTGGACAGGGCCCTC 1503032 29 100.0 32 ............................. TAGCCATCGGCGCGGAGCCCATCGCGAAATGC 1503093 29 100.0 33 ............................. GTGCCACCGCAGTACACGTCCAAGACGTGCTGC 1503155 29 96.6 32 ............................C TGCGCCCGGTGCTGAGCCGGTTGGCCGTGCGC 1503216 29 100.0 32 ............................. CGCAGGGCATCGGCCCAATCGGCGGGGCCCCA 1503277 29 100.0 33 ............................. GAGGGAACTGGCATGACCTGGCGGGTAGCGCGC 1503339 29 100.0 32 ............................. GGTCTCAGACGTACCACCAGGGGGGTAGAGGA 1503400 29 100.0 32 ............................. CTGAGGATGCCGCCACACGGTATCAGGCCACA 1503461 29 100.0 32 ............................. CCGCGCAGGTTGTGCAAGGCTTGCTTGGTGAA 1503522 29 100.0 32 ............................. TGAAGCGTCCTTTTTTGTCACGCTTGGGCAGT 1503583 29 100.0 32 ............................. TGCTGAACCGGATGACCGGGCCCGCCTCGAGC 1503644 29 100.0 33 ............................. TACTCGAGCACGTCTAGCCCCCTAGATGATGCC 1503706 29 100.0 32 ............................. TAGGGCGGCCCCTTCGTCCCCCAGCGCTCGTA 1503767 29 100.0 33 ............................. GAAAACGATCACACCAAGGACATGGAGCGCTAC 1503829 29 100.0 33 ............................. GTCAGGTAGGGAAGCCCGTCTTTTGCCCTCGGC 1503891 29 100.0 33 ............................. TGGACATTACACAATGGCGCGCTACCATGTAAT 1503953 29 100.0 31 ............................. GGCCACCTGCCGTTCAAAGATGGTGGCCGTC 1504013 29 100.0 33 ............................. TAGGGTTCAATCCCCCTTCCCCCGGGCCCACGC 1504075 29 100.0 32 ............................. GTGGGCTCACTTCCCTTTTCCCATGTCGCCCC 1504136 29 100.0 32 ............................. GTCAAGCTGCCGCCTGAGCTTGTGCGTCGGGT 1504197 29 100.0 32 ............................. CTTTTCGATGCTGCAATCGCCGCTGCTGGCCG 1504258 29 100.0 32 ............................. ACACTCGGTGACGCCGAAGTGCGTTTCGTTGT 1504319 29 100.0 32 ............................. GTAGGCCTGCATATAGCCGATGGCGCGGTGGA 1504380 29 100.0 30 ............................. ACATTGTGTCCATACTCCCGGCCACCAGTG 1504439 29 100.0 32 ............................. TCCCTGGTTTTTGCTTTCTCCCCAAGAGACTC 1504500 29 100.0 32 ............................. CCCCACCCCCGCGATTCGGCGAACGATGTATC 1504561 29 100.0 31 ............................. AGCAGAGGCTGCCCGCCCAGGCCTGGGGGCC 1504621 29 100.0 33 ............................. CTTTGAGCGCAACCAGGCTTTGGCCTTTTCCCC 1504683 29 100.0 32 ............................. ATGGCGTAGTCGTATAGCGGCCATGCGTTGGT 1504744 29 100.0 32 ............................. ACATGGTCGACGCAGCGGCATACGCATTTCAT 1504805 29 100.0 32 ............................. ACCCGCACCTGGACGGTGCGGGTCAACCACCG 1504866 29 100.0 32 ............................. CTCAGCTTGGGGGTAACCGCACCCAGCCCCAG 1504927 29 100.0 33 ............................. TATATGGCCTGCGACAACATCAATGCGGCAGTC 1504989 29 100.0 32 ............................. GGCAAGAAGCGGCCATGGAATGGGGCCCTGAA 1505050 29 100.0 32 ............................. GCGGCCATCGTGCGGCGCGCAAAATCCGAGGG 1505111 29 100.0 32 ............................. GATTGCAAAGGCTTCTGTGGTGGAAGACAAGC 1505172 29 100.0 32 ............................. ACAGATACTTCGTATCTGTCTCCTACACATGA 1505233 29 100.0 32 ............................. GCACCCCGCAGATCACGGGAGCCATCCACAGT 1505294 29 100.0 32 ............................. ACCGATATTTGCTCAGCGTTTGAACAGTTCGA 1505355 29 100.0 32 ............................. CTATGGGAGAAGGACAGAAGTTGGAACCACAT 1505416 29 100.0 32 ............................. GCGTGGGCACCAGAACAAAGCGGCCCGACTCC 1505477 29 100.0 32 ............................. CGATGCCCCCGCACTGAGCGTGGACGACATCG 1505538 29 100.0 32 ............................. TTCGATGGCAACTACTTTGAGACTGGGTTCTG 1505599 29 100.0 32 ............................. TTGAGCGCCCACCCCTGCTCGTTGCCCACCGC 1505660 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================== ================== 75 29 99.8 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Left flank : TCTTCGATGCCCTCGAGACCCCCGACCCCTACGCTGCCGACCCCGCAGCACCGGGCGATCTATGGGATCCCGACGGCCCGGTTCCAGGTGGGATAGCCTATGGTAGTGATCGTCCTGGAGAAGGTACCCAAGACCCTGAGGGGTGAGCTCTCGCGCTGGATGCTCGAGGTGAGTACCGGTGTGTTTGTGGGCAGCGTTTCGGCGCTGGTGCGCGACCTGCTCTGGGAAAAGTGCGTCGCCAAAAAAACTGCTGGACGCTGCTGCCTGCTCTACCGCACCAACAACGAACAGGGCTTTGCCATCCGAACCCATGGCGACACCACCCGCACCCTCGTAGACTTTGACGGCCTGACCCTGGTGGCCGTGAAGAATGCCGAGTGGGAGCGTATGCACCAAAAGCGAAGTAGAAAAGCCAAACCAGGGGTGAATCTTGACAATCAGACTCGGGATTCTGACACTTCCGGGGGATCGAGCGGCTAGTTTTGCTGTTAGAATCAAGT # Right flank : GAAATGAAGCCTTTGTTGGTTACGTACCTGCGCGGCTTTCAGCTAGCACCTTCTGCCACGCATCCCGGAGCCACTCCTGGGGAGTAAGCAGCCGAACTGTACTCAGCAAATCCCAGTCGTTATTTTTGCGGGCAATCTCCACCATTTGCGGCCAGAGCCGCTCAAAGTCCTCGCGGGTATAGCGGCCTTCCCGGTACAAGATGTACATTTCGTCGTACAGTTCGGATATCGGGTGGGGAGCCATAACTACCTCAAGCTGTTCAGAAACCAGTCTTCGGGTTCAACATACGCACCGCATTAAGTGCCTCGTAATCTCCGCCAGAAGCCTCGATTGGTTACAGCCAGAGCTGCTCAAACTCTTCCTATGTATAACAGCCATCGCGCCAAAACGAATAGATGGTGGTCGTTCAGGGTTGCGACGGCTGGCTTGTTAGTTGTCACGTAAACTCCCGGGCACTCCCTACATTATAGCAAACCAGGAGGGGTCGAAGCTCCTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1762767-1760272 **** Predicted by CRISPRDetect 2.4 *** >NC_021081.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1762766 37 100.0 37 ..................................... AAATACTTCTGGGTGCTGGAGTTCCAGTCTCGCGGGG 1762692 37 100.0 34 ..................................... TGAGGAGGGCTAAAGCTGCACAGATACGTCGGCA 1762621 37 100.0 34 ..................................... CTATACTCATGGCATCTCCTTTCTTGGCCCCGGT 1762550 37 100.0 36 ..................................... TATTTGTGCTCGATTAGCTCCCGAGTTGTACAGCGT 1762477 37 100.0 35 ..................................... CCAAATCCGGGAGGGGATAGTGAATGCTATCCACT 1762405 37 100.0 34 ..................................... GTCAATATTGACAATCGCCCAGGTTTCGTCAATC 1762334 37 100.0 35 ..................................... TGCATGCACACACACGCGGCGGGCTGGCAGCGAGC 1762262 37 100.0 36 ..................................... GATGAACTGGTGACCCTTGCGCACCGCCGCAAGCAC 1762189 37 100.0 35 ..................................... GTATAGAAAGACATTGGAGAACTAATAACAGGAAT 1762117 37 100.0 36 ..................................... TTTGTCCGCCCGTCCCGGGCCTGTACCACCTGGAAG 1762044 37 100.0 36 ..................................... GAGAGCCCCGCTAAGGTGCAGGTAGCGGGCCTGCAC 1761971 37 100.0 36 ..................................... GCGCAGCCGGACGCGCTCGCCCGATTGTGACCCCGG 1761898 37 100.0 36 ..................................... CCGGGCGCGCTTGGCGATTGCCAGGCGCACTCGGGT 1761825 37 100.0 35 ..................................... GTGAAGCTCAAGAGAGCCGGCGACCCGGGTCGCTG 1761753 37 100.0 35 ..................................... GGCCACATCACTGCCGTCGCCCCAACCCTCAGATT 1761681 37 100.0 37 ..................................... GCAGGCTGGGCTGCCTAGGGCGGCTGGGCTTGCAGGC 1761607 37 100.0 35 ..................................... TACACGACAGCGTAACTCACTATTACGCCGCCATC 1761535 37 100.0 34 ..................................... GGCATCGAGGGAGTTCAGCTTCCCGCTGAGGTGC 1761464 37 100.0 36 ..................................... CTACTCTGACACCAGCGCTGGGCCCAAAAGGCCCCG 1761391 37 100.0 35 ..................................... ACGAGTTAGCGTAGCGGTTGGAGGAACCTCATAGC 1761319 37 100.0 36 ..................................... GCAACCCGACTTCGAGGCGGCGCTGCGGCTGGCGGC 1761246 37 100.0 34 ..................................... CCGGAGCACGAGCTGCTCGGCATCCCGTACCCGC 1761175 37 100.0 36 ..................................... CTTTGTGCGGATGTTCTCCCACACGGGGCCCTCATC 1761102 37 100.0 34 ..................................... CCGGCATGGAAGGTCTACAAATTGACGGCCCTCG 1761031 37 100.0 35 ..................................... TTTCCGCAGGCAATGGCCTGGCTAAAAAGTACGAG 1760959 37 100.0 35 ..................................... CTTCCCCCCGGGAAGAAAGCCCCACCCCCAGGGCC 1760887 37 100.0 36 ..................................... GATTTCCGCACGCCGCAGGAGATTGCGGCAGATGAG 1760814 37 100.0 35 ..................................... CAAAGAATCAAGAGAGCCTCTTTGCGAATCATTTC 1760742 37 100.0 35 ..................................... CTGCCTTCTACACGGCTAATGGCCGTGGTAGTGCC 1760670 37 100.0 35 ..................................... TCAATGAGGCCTGTGTTGTGCACGTGGGAAAAGTC 1760598 37 100.0 35 ..................................... ATGGTCTTTTGCGCTGCGCACCCCGGCCACCACCG 1760526 37 100.0 36 ..................................... CTGGACTTCAGAAATTTATCGACCGCATCAGCATCC 1760453 37 100.0 35 ..................................... ACAGAGGCGCTCACTACAGCAATGTCGAAAATCCC 1760381 37 97.3 37 ..............................C...... GACCTGGCTTGGTCTTAAACCAGGCCTCTCCCTGGGG 1760307 36 94.6 0 ...........-...T..................... | ========== ====== ====== ====== ===================================== ===================================== ================== 35 37 99.8 35 GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC # Left flank : CTGGCCCGGCTCAAGGTGGCTACCCAGGGACGCTTTTTAGCCCTGCGCACCATCGGGTCTACCCTGGTAGGGCAGGGCCTGGATACCGCTATTTTCCTGCTGATAGCCTTCTATGGCATCTGGGACAACAACCTGCTTTGGACAGTGTTCGTTTCGAACTACATCTTTAAAGTTGGTATAGAGGTACTGTTCACGCCCATTACCTATGCCGTGGTGGGCTTCTTGAAGCGCGCTGAAAACGAGGATTATTACGACCGCAATACCCGCTTCAATCCGTTTGCGCTGCGCTAACAAATTAGTCTCGCATATCTGGTAAAATGCGCGAACCCCAAGCAGGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTTGGGGGGTTCGCGCAAACGGCCTCTTGAGCCCCGTCCTGCACGCACGCTAGAATGAGGGC # Right flank : CATGATTCCTCTAGACGAGTTGGCCAGACTCTTTCCCCCTACGCGCCTGCTGCACAAACCCGGCGAGTTGGCGCCATACGAATCCGATGCGCTCACGGCCTTCCGGGCCCGACCGCTGGCGGTAGTGCTACCCGAAACCCATGAAGAGGTGGTGGCCGCGGTGCGCTGGTGTGCCAAGCATCAGGTGCCCTATGTGGCCCGCGGCTCCGGCACCAGCCTTTCGGGGGGCTCGCTGCCCATTGAGGGGGGCCTGGTCATTGGGCTCAACCGCATGAACAAACTCCTGCGGCTCGAGCCCCAGGAGCGCATTGCCGTGGTGCAGCCCGGCTTTATCAACTTACAGGTCTCGAATGCCGCCGCCCCCTATGGCCTCTACTACGCCCCTGACCCCTCTTCCCAGCCGGTCTCGACCATTGGGGGGAACCTGGCCTTTAACTCGGGCGGGGCCCACTGCCTCAAGTACGGCATGACCTCCAACCACGTGCTGGCGGCCAGGGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 4 2861183-2861434 **** Predicted by CRISPRDetect 2.4 *** >NC_021081.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 2861183 28 100.0 47 ............................ TTGCTCAGCTTATGAATGAAAGCCTCATAACTTCCCCAAGCTCGCGC 2861258 28 100.0 46 ............................ ACTTCAACGAACTATGAGTTGGCCGTCAGTTAACCCAGGGCTCGCG 2861332 28 100.0 47 ............................ TTGCTCAGCTTATGAATGAAAGCCTCATAACTTCCCCAAGCTCGCGC 2861407 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================== ================== 4 28 100.0 47 CCTACCGGCCTCGAGCGATAGACGAGGC # Left flank : GCATCCAGCAGGGCACCTTGCTGGCAACCGCCACCGGCGGCAACTTCGAAAGCATCCTGATGGCCTACGGCGACCAGCCCGACCCGCAGTTGCGCAAGGACATCTGGCAGCCGGGCGGCCAGCTCAACTACTGGCACCGCTCAGTCTGGCCCGACCGGGGCAGCAGCGAGCCCAAGTTCGACCAGATGTTCCCCTGGGAGAAAAACATCTGGGAGATCTTCCGCCAGGCCGAGCAGCTCGGCGACCAGAACGAGCGCAAACGCCTCTACGATCGCTGGCAGCTTCTCTTTGCGCAGAACCTGCCCGTGATTATGATTGCCAAACCCACCGCCGTGGCCGCCGGACACGCCCGTCTTGGCAATTTCTTCGCCCGCGACAACCGCATCATCTTCACCAACTTCAGCATGTTTGAGAAAGCCTGATGCGATAAATCTTCTCGAGCGCAAGACGAGGCATCTCGACACAATATGAGCTTGCCGTTAGCTAATCCAGGGCTCGCG # Right flank : CACTTCAACGAACTATGAGTTGGCCGTCAGTTAACCCAGGGCTCGCGCCTACCGGCCTCGAGCGGCTTCTCGCTGAACCCAGCCTTCTAGGAAAAACAGGGCGCCTTGGACTGTTGAGCCATCCGGCAGGGGTGACCCGTGACCTGGTTCCCGCTGCGGTGGCCCTTTTGCAAAAGGGAATCCGGATCGAGCGCCTCTTTGGGCCCGAGCACGGGGTGGACGGCTCGGGGCAGGCCGGCGAGGCCCCCGAGATGGCCGCCGACCCCCTTACCGGCCTGCCGGCGCACAGCCTCTACGAAAAAACGCCAGATGAGCTGGCGGCCCTCATCGCCCAGGTGGATACCCTGCTGGTGGACTTGCAGGACGTGGGGCTGCGCTACTACACCTTTGTCTCCACCCTGGTGCAGGTGCTGGGGGCGGCCCGGCAGAGGGGGGTGCGGGTGGTGGTGCTCGACCGGCCCAACCCCCTGGGCTTTGCAGTCTCGGGGCCCATCCTGCAA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTACCGGCCTCGAGCGATAGACGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 3032570-3031740 **** Predicted by CRISPRDetect 2.4 *** >NC_021081.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3032569 37 100.0 35 ..................................... GGCGGCCAGGAGGAGGGCCCCGGCGAGCGCTTCAG 3032497 37 100.0 34 ..................................... GAAGACGGCCCCCGCGACCCCCCCGATGGCCCCC 3032426 37 100.0 37 ..................................... TCGAGAGTGGATGGCCCGCTCGTAGAGCGCTCTAGAG 3032352 37 100.0 34 ..................................... CTTCATATATTCCTCCCTTCTGGCTATAGAATAG 3032281 37 100.0 37 ..................................... CTCAATGACGGACGCAGTGCCGGTTTGGAAGTCAACG 3032207 37 100.0 36 ..................................... CTCGCCCGTGAGGGTGATGGCCCGCAACAACCCCAC 3032134 37 100.0 35 ..................................... GCGTAGGTGCAGGCGGCAATCGCCGCCTCCACCGC 3032062 37 100.0 33 ..................................... GGCGAGGGCTTGAACGAGTTCCTTCATGCGTAC 3031992 37 100.0 35 ..................................... TTCGCGGGCGCCGGCGAGGGCGCCGGCCCCCTGAC 3031920 37 100.0 36 ..................................... TTCACTAAAAAATTTCCGCAACATAGACCCAACAGT 3031847 37 100.0 34 ..................................... CTCAAAGTTGATGTACACGCGGAAATCTCCTAGG 3031776 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Left flank : CGGCCCTGCTCGGCCAGAGCCTCTAGATTTGCTCCCAGCAGCTCCAGATCCCTCACGCATTTTTCATCATACTAAGCCGTGGGTGGGCTGCCCAGCCCACCCTAGCCGCCAGCACAACATTTGGGAATGTCGCCAGCAGTTTGCCCCGGCACCGGAGCCGGTGCAAAGAGGGCCAACCCTCCCAACAACAGAACCAGCGCAACCAACCAGCCGATTTGCTTTTTCCCGAGAGCAGAACGTGTCTTGTTCATGCCCTCCAGCGTCGGGGCGGGGTATGCACAGTTTGTGCAGGGTGAGGTAATCTAGTGGCTAGGTAACCGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTTGGGGGGTTCGCGCAAACGGCCTCTTGAACCCCGTCCTGCACGCACGCTAGAATGAGGCT # Right flank : TACACCGCACGCGACGCTCATCGTCGCCGAGCACGATGCGATTTCTTTTGAACCTAGTGGTGGATCACTCCTGGTCGGTGGATTCCTCGAGGTCGGGTGCTTCTTTACGCGGCTTGAGCAGAGGGAAGAGGATTACGTCGCGGATGCTTTCTTGGTTGGTGAGTACCATAGCCAGCCGGTCTATGCCCAGGCCCATACCGGCGGCGGGGGGCATGCCGTACTCGAGGGCCAGCAAAAAGTCTTCGTCGATCTCCGGTTCCTCGTCGTCGCCGGCCTCGCGGCGCTTAGCCTGTTCCTGGAAGCGCGCGCGCTGATCGAGGGCATCGTTGAGCTCAGAATAAATAGGGGAGATCTCGAAGCCGGCCACAAATAGGTCGGCGCGCTCGGTGAGGTTGGTCTTGCTGGGGTCGCGGTGACGCTTGACCAGTGGGCTGATGGCCAAGGGCACATCCACCACAAACGTGGGCTGAATCAGGGTGTGCTCCACGTAGTGCCCGAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 6 3050801-3051705 **** Predicted by CRISPRDetect 2.4 *** >NC_021081.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3050801 37 100.0 35 ..................................... AAACAAACTGCAATGTCCTGGATATCCCCTGCAAC 3050873 37 100.0 34 ..................................... GAGGCAGCAGTAGCTCAATATGCAGACACTCTCT 3050944 37 100.0 38 ..................................... TATACACTATATACATACCATTTACTTCTGCCGGCAAT 3051019 37 100.0 35 ..................................... CTACTCTGGCACTAGCGCTGGGCCCAAAAGGCCCC 3051091 37 100.0 38 ..................................... CAGCCAGCCGTTCACCGCTAACATCAATGTGCCCGCGC 3051166 37 100.0 34 ..................................... CTGCTGAGCAGCAGAGCGACAATTTTGAGCGCCA 3051237 37 100.0 34 ..................................... TATGCGTATAGCCCGCTGCTCGTAGAGCCTCTAT 3051308 37 100.0 35 ..................................... GATCGCCCGGGCAGTTTCCATGGCCTCGCCCGTGT 3051380 37 100.0 37 ..................................... CAACGTTACCTCACGCATTACGGGAAACAACGCGCAT 3051454 37 100.0 34 ..................................... ACAAAGGCGAGCGCGTCCGTCCTCCGCAAGCCCC 3051525 37 100.0 36 ..................................... GCCGGCGTTGCGGCTCCCGAGGTAGCCGAGGAATTC 3051598 37 100.0 34 ..................................... CTTGGTATCATCATAAAGATGCACCTATTATAAG 3051669 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Left flank : TGGAACGGCTAGACATTCTGGTGACCTACGACGTAAACGTGACCTCCGCAGACGGTCAGGCGCGCCTGGCCCGTGTTGCCAAGATTTGCAAAAACTTCGGTCAGCGGGTGCAGATGTCGGTCTTCGAGTGCCGCGTCTCGCGGGCCCAGCTAGAAGACATGGAGGCCAAGCTGCTCAAAGTGATCGACCCGGACAAAGACAGCCTGCGCATCTACACCCTGCCCGGTGGTCGCGAGCGTTGTTTGCGCGTGCACGGTCAGGACAGGTACACTGATTTTGACGATCCACTGGTGGTCTAAGCCACCCTGGCACTTGCTTTGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTGGGGGGGTTCGCGCAAACGGCCTCTTGAACCCCGTCCTGCACGCACGCTAGAATGAGGCT # Right flank : CGGGTTTCCACCAGTCTGAGTTGCCACAGCGCCGCCTCGTTGCACTCGGGCGAAGCTTAAGCCAAAAACGCTTGTGAGCTAGGGAGGGGAACTCACAAGCGTCTTTAGAAGCACCCACTATAAGTGGGATGCATTATTTATGTCTGAATTGAACGTCTTTGGGTAGGTGAAGAAAGTCCTATATAAGTGGTTCAACTATCAAAGAATAACCGCAACAACAAAGGTAATAGCCAAAGTACCCACAAAAGCTGCGGCCAGGGTAATCCAAATTTTTCCACTTTCGCGCAGGTTCATACTCGACTGCACAGCCAGGTAGGCAAAATACACGTCAACAACCAGAGATGCGATCATCAGTAAGGGAATTAATAGGATGCCGATTAGAGTGACGATTAGAACTAGGTTTAGCACCGCAGTCAAAACGCTGATGGGCACCCAAAATAGCGCAAAAGTATAGGCCACATTGTCTAGTGTTCCGGTTCCTCCCTGGGACTTACCGACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA //