Array 1 115263-115682 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDC01000003.1 Rothia aerolata strain CCM 8669 sequence3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 115263 36 100.0 28 .................................... TTCGGCCCTAATCATGATGTTGCGCCGG 115327 36 100.0 28 .................................... CTCATTTTGGCATAGCGTGTCGCCTGAT 115391 36 100.0 28 .................................... TGCTCACTGATGATGGAGTGAAGCACCT 115455 36 100.0 28 .................................... CCAGCTTTGACCGTGTACCGGGCAATCT 115519 36 100.0 28 .................................... AGCGAGTGGCCCGCATGTTCCCTAAAGC 115583 36 100.0 28 .................................... TGCCGGGCTCTGTGGCGCCTGCCGGTGC 115647 36 97.2 0 ..................................G. | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 99.6 28 TAAGTCTACCTGGGATCAGAGGTGAAGATTCCCAAC # Left flank : AAGAGCAAAGAGCAGAGGACGAGGGCAAATCAATACAGGAACTTGCTGAAAGATCGTGGGTTTGACATGGTGCAACTTAGTGTCTATTGCAAGTATTATCTGAACGGTAACTCATCTGAGCGAGATATTGGAATCTTGAAGCAGAACGTTCCAGTAAACGGCTACGTGCGTGTATTGAAAGTAGCTGATCAACAGTGGGCTTCTACCTTGTTATTTAAAGGTCCACGGCAAAAGAAAGCTGAAGCGCCTCCGGAGCAACTGACTATTTTTTGAATTTGATAAAACATAACCCCACACGTGCTATGCACGCATGGGGTTGATAAATCACATACTTTCGTATGCTTGTTAGGAATCTTCACCTCTGATAAATCCTAAAGAAAAATCTATCAGATTTTTCTTCGAGATGCATAAATCGTTATGTTGGACACGTAGGAAATTCATTTTTTCTGTTGAAAAAGTCGGAAAAAGATGCTTCTCACTAGGTGTTTTATGTAGTTATT # Right flank : CTGACGCTATCCTGGCTGCGTCAGCGGACTATAAGCCTATCTGGATTGAAAATGGAACTTTCATGGGTGGTTGGTTCTGGGCGTTTACTCGCCTGTATCTATCGTAGTTTTAATAACTGTAATACAATTAAGAAATGGAAATAGTCATCGCAGCTTCCGCCCTCAAACACGGGATCACTCGTGATGAGATTTTTGAAGCACTGGAGAACCACATCTATGTGATTGACAACTTCGATGAGTCCAGAATTCAAGGTTTACCTTCCCCTACTCTGCATATCGGGAAAACCTATCTTCGAGCAACGACAGCACTGAATGAGAGGTGAGCAAAGTGGAACAGAAAATGACTCCCCAAGACATTGAAGAGCTCAGCGAGAAAATGGCGGATTGGGCTGAATCTGATGACTTTTTTGAGGCATTTAAAGGTGCCCGGGTAAGAGCTAGAGATGAGAAAACTGTTGAGGAGATGAATAGACTTCTGGAAACTATCAGGCCGGGGCGTC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTCTACCTGGGATCAGAGGTGAAGATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 221840-223212 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDC01000003.1 Rothia aerolata strain CCM 8669 sequence3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 221840 29 96.6 32 ............................G GAGATTGCGGCGGCGAAGCTATCCTCCGTGTG 221901 29 96.6 32 ............................C CGTATCCCTATTCGCTTCTCCACCTCGGTGCC 221962 29 96.6 32 ............................C ACCCGACGTCTCAACCCAAGTCTTAGACTCGA 222023 29 96.6 32 ............................C AGCCGTCAAAGCGCCTGCCCTCACCCCAGATT 222084 29 100.0 32 ............................. TTCGCTTCTATGGGCACCGGGTGAGCAGATTA 222145 29 96.6 32 ............................G AAGCCTACGACCTCGGTAAGAAGCACCGCGAC 222206 29 96.6 32 ............................G AAGCCTACGACCTCGGTAAGAAGCACCGCGAC 222267 29 100.0 32 ............................. GAGGGTTTTGAGGCCGCGGGCGTTGGCGGCGT 222328 29 100.0 32 ............................. CCATGTCCTGCCTGACCTGCGCAAATTTCGCG 222389 29 96.6 32 ............................C ACGACAAGAAGGCATGGCTGGTCGTCACAGAT 222450 29 96.6 34 ............................A CAAGAAAAAGAGTGAAAAGACCGTGACCGCATAC 222513 29 100.0 32 ............................. CAATCAAACTTGAAGCATGGGAACCACGGCCC 222574 29 100.0 32 ............................. CGGTGGGGGAACCGCTACGGAATTTTTTCACC 222635 29 96.6 32 ............................G GGGGAGCGTGCCGGGGGCACACCCATTCTTGA 222696 29 100.0 32 ............................. CGTTCAGTGCCTTAGCCGCTTCCTTCTGATAG 222757 29 96.6 32 ............................G CCTGAGGAAGTGAAGGTGGCGAATCCTTTTGA 222818 29 96.6 32 ............................G TCTCAGCCTGCCGCATCGTCTTCACACCAGAA 222879 29 100.0 32 ............................. GCGCACTAGTGTTGCCCCCGGGGCGGGAAAGA 222940 29 96.6 32 ............................C GGGGCAGGGTGAGCGTGCCCGGCTCAAGTTTT 223001 29 100.0 32 ............................. TCGTAATCGAAGCAGAAGGAACCCTCTACGGA 223062 29 96.6 32 ............................C CGCTCCGCCAAATCATTGAACCCACGCGCAAG 223123 29 96.6 32 ............................C GAGATATTGTCATGAAGGCACATGAAGCCGCA 223184 29 86.2 0 ...........A........A.C.....C | ========== ====== ====== ====== ============================= ================================== ================== 23 29 97.3 32 GTGCTCCCCGCGTAGACGGGGATGAGCCT # Left flank : AAGATAGCGATGAGCTAAAAGCCGAAGCAAAGGTTCGCGATACCGATGACACGCTAGAGGTAATTGTGGTTCAGTCTGATGACGACCAAACCTACAGGCCGCTTCATGACGATTATGCAGATCAGATGCCTTTTGATAGGGACAGTCCCGATAAACCTGACTGGAAACTAGCGAATACTTTGGCGGCATCAACGATTCGGCTACCTCATCAATTTGCTGATAACGGTAAACCTGCTATTGCTAACCCCTTCGATAAAGCACTGGATGAGCTAGAGAGAAACCAGTTTTCATCCTGGCAAAAGCATTACCTGCTGAAGGGGCAGCTCGCCTTAGTTCTAGATGCGAACTTTGAGTGCGTTCTGGTTGGTAAAACTGTTCGTTACTCGAAGGAACTGGGCCTACAAGTGATTCGAAACGACATGAGCTAAAATTTAGTCAGGGCTATTGGCAAACCGAATAGGTTTAGCTTGTTGATTGGAAGTTTCCGCATGTCAGCAAGT # Right flank : CTCTCATTTTCTCTATGAATACTTATAGTCGACTATATGTCGAGATACCCCAAGGGCATAAAAACAAGGCCCTCCCCACTACCTCTAGCGAGAGAGCCTTTTTTAAAAGGAGAGAGCACTTAGTGTTGCAAAGCAGAATCCCCTAAGAGAATCCTGTCTGTTCACGTCCTAGGAAAGAGTCGAGGTATCGACGGTGTAAGCGCCAGTTTGAGGAGTCCACAAGATAGTCTTGCCGTTGGAGAAATCCTGTCGAGTCTTACCCTGGTAGCCGTGCTCTTCGTTTGTTGGGTAGCCTAGCTTATTGGCACCGCCCTCAGCGACCCACCTCCAGTAAATTCCACCGTTACCGTTCATCTTGTGAACCTTAGCTTCAGCGTTATTCCAGGTGTAGAGGGTTCGCTCGCCGTTCGCCTTCTTGAACATTACCGATGCGCCGTTGTTGCCCAGCGCTTGCTCGTCGGTTACAGGGAAACCAACACCTTCGGTGTAACCGCTATTCA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGACGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //