Array 1 922139-923204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022120.1 Salmonella bongori serovar 66:z41:- str. SA19983605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 922139 29 100.0 32 ............................. CGGCAACCGACCCATCTGGAGGTACTGAAAAT 922200 29 100.0 32 ............................. GGCGGATACCGCTAATAAAATGCTAAAACAGC 922261 29 100.0 32 ............................. GCCATTAACCGTGCGTTGCGTCAGGTTGATCC 922322 29 100.0 32 ............................. TCTAATCAGTATAATGAAGAGACTTTAATTAA 922383 29 100.0 32 ............................. ACAATTCAGGACGTGCTGATTTCTGGGCTGGT 922444 29 100.0 32 ............................. TTATTCCTGAAAATCCTAATCTTCTATTTGTA 922505 29 100.0 32 ............................. AGTCATAAAATTCGGCGCATACGATAACTTTT 922566 29 100.0 32 ............................. AGCGAGTTCATTATAAATATCATGGTTGCCGC 922627 29 100.0 32 ............................. TACCCACGCGCAGCACGCCAATTTACGTAGTT 922688 29 100.0 32 ............................. GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT 922749 29 100.0 32 ............................. CCAATAATTAAACGTTGCATTTGTTGCTTCGG 922810 29 100.0 32 ............................. TTTTTTTTGTTTTATCAGGGCTACGCTATAAA 922871 29 100.0 32 ............................. GAATATCACATGAAATGTCAGGAACGCCTTTT 922932 29 100.0 32 ............................. ATGTACGCCAAATTTTCGCAAGTCATCGATCA 922993 29 100.0 32 ............................. GAAACAGTTACGCATCCGCTGTTTCCTGCTGG 923054 29 100.0 32 ............................. CTTCCGGATCATCCTTTGGTAACGGCTCTGAC 923115 29 100.0 32 ............................. GCAGATGAAAAATACTGCGGTTGGGTGCCCTC 923176 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCTATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACTTCGATATTATTCGATACCGGACCTGACGACAGTTTTCTACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 939186-940435 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022120.1 Salmonella bongori serovar 66:z41:- str. SA19983605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 939186 29 100.0 32 ............................. AGACATCAGACCACCGCGAGCCAGGAACACGG 939247 29 96.6 32 ............................C GGGTATACGTTACACCGGGCAAATGTGGTACA 939308 29 100.0 32 ............................. GGGGGATGGAGGTGCTAGACCCACAGTTTTAG 939369 29 100.0 32 ............................. TTGGGCGACTCCAACGTTATAAAAATCAAAAA 939430 29 100.0 32 ............................. AATAATAGATTTATTAAGTGCGGGAGAAATTA 939491 29 100.0 32 ............................. TAATTCCTGTTTCCGTCATTAGCTGGCATAGA 939552 29 100.0 32 ............................. CATATAGTCATCTTACGCTAACAACTTGTTAA 939613 29 100.0 32 ............................. GATATATTCAGCGATATACTAACGGAATTAAT 939674 29 100.0 32 ............................. CGTTTCTCAATGGTGGGATGGCGCAAATGAAC 939735 29 100.0 32 ............................. CGGCAAACAAAATAGCGATTCACGGTAATACG 939796 29 100.0 32 ............................. GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA 939857 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 939918 29 100.0 32 ............................. TTACGCTGTGTAAAATACGGGGTGCATTCTAG 939979 29 96.6 32 ............G................ TACAGGTTGCCATCGGCCCCCATTCCAGCCAA 940040 29 100.0 32 ............................. GAATCCAGTTGCCGTTTAAATCAATTCGCGCC 940101 29 100.0 32 ............................. CACTACCCGTCTGAGGCCTGGACGATTATCCA 940162 29 100.0 32 ............................. AATTCAATACGGAGGGGTGTCAATGGATATCA 940223 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 940284 29 96.6 32 ................A............ GTCAGAATGACGAATTTCCCTGAATTATCAGA 940345 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 940406 29 86.2 0 .....................C.TT..T. | T [940431] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATACTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //