Array 1 5946-1892 **** Predicted by CRISPRDetect 2.4 *** >NZ_AENO01000039.1 Porphyromonas asaccharolytica PR426713P-I contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5945 33 100.0 35 ................................. TGGTCGGTCTGTAGATTATATCTTTAGTCATACTT 5877 33 100.0 33 ................................. ACCGGAGAGACCTTAGCAAGCAGATTGTCCACA 5811 33 100.0 35 ................................. TTGTTATTAGCTCTGATGATTTGAGACTTACGGTC 5743 33 100.0 34 ................................. TGCACAAAGCCCTTGATTGTGTAGACGGTGCGCT 5676 33 100.0 33 ................................. GAGTTACGATTGTCCCGTCCTCCCAAAGGATAA 5610 33 100.0 35 ................................. TAGCGAATATAAAACTTACATACTTGTGGACGATA 5542 33 100.0 34 ................................. AGACTTAAAGGCTCTGCCCAGCAAGTAAAGGGAC 5475 33 100.0 33 ................................. CTCTCGCAGGCACGGCTAGACGACACGCCCGTA 5409 33 100.0 34 ................................. GTCTCGTAGCATTGTGCCATATAGGGGTCGACCT 5342 33 100.0 34 ................................. TTGCGTGTGGGGCGTATGTTGCCGGGGTTGTTGC 5275 33 100.0 34 ................................. CTCGGGGGTTGCTACGCCCTTGGCTCGGAGCGAT 5208 33 100.0 35 ................................. AAAGACCCCGACAAGGAGCTTTCGCCCCTTAAGAC 5140 33 100.0 34 ................................. ATCTCGATGTATAGTCCGTGGTGGTATTTGTTGG 5073 33 100.0 34 ................................. CCGTAGCCGATTGATTTTAACAGATGTGGGGGGT 5006 33 100.0 33 ................................. TCTACATACTGTTTAGTAGTTAGATTAGCGTCA 4940 33 100.0 35 ................................. AATTGGTGCTGGTGCGTCTCTTGTCGGTGGTCTTA 4872 33 100.0 33 ................................. ATATCTGATACTTGGACTAATGGTAATATACAG 4806 33 100.0 36 ................................. TTATACCCTCCACCGCATCGCTTGTGCTTACCGCCA 4737 33 100.0 33 ................................. GGTTATGTCCCGAGGTATGACGAGTATCGTTAT 4671 33 100.0 35 ................................. TTGAAAGCTACCAGCCTGCCGATGTGCGGGTGGTC 4603 33 100.0 34 ................................. AGGTGGGTACCGTGATCTCGGGTCGTATATCCTC 4536 33 100.0 34 ................................. CTCGAGAAGCCGATAGCCGAAGCGATCAACAAGC 4469 33 100.0 34 ................................. GAGCACCTTGATGATGTCTGACTGGAGCATCTCG 4402 33 100.0 35 ................................. TGCTGGCTTAGGCTCGTCCTGCCCCTTGTTTGTGG 4334 33 100.0 34 ................................. GTATTAGGTTCCGTCCTCCTACTCGGGGGGTGTC 4267 33 100.0 34 ................................. TGTCGAGCTGCTTTTTGAGGTCGTCAATTGTCGT 4200 33 100.0 34 ................................. TTACGGAGTTGCTCGACTTGCGTACGGATCACCG 4133 33 100.0 34 ................................. TTACGGAGTTGCTCGACTTGCGTACGGATCACCG 4066 33 100.0 35 ................................. CGGTACTTACAAGTATCCATATTAGATTAGATTAA 3998 33 100.0 34 ................................. TAGAAAAGCTTCTGACCCTGCTGTTGCATCTGTT 3931 33 100.0 35 ................................. ATTGTCGGTTTTGTTCACCCCACTTTGCGGGGCAA 3863 33 100.0 34 ................................. ATCTTGTCTATCTCTATCATATCCGTGTCCTCTT 3796 33 100.0 35 ................................. TTGAGAAGCCTTTGCTTGAGTATTTTGGTATCTCT 3728 33 100.0 34 ................................. TACGAGAGTGAGGATATACGTGAGCAGTGCAGAC 3661 33 100.0 35 ................................. GGTAAAGTGTCAGACACTACACTCTGTGGCGCACG 3593 33 100.0 35 ................................. GTCGGACAGCTCATTAACGAAGATGAGCCAATAGA 3525 33 100.0 34 ................................. GGTGTTGAACCGCTTGATGCTCGTGTACAGATAC 3458 33 100.0 32 ................................. GGATACACCTGATATATCTAAGATTGATATAC 3393 33 100.0 34 ................................. TCTCGTATCTCAGACGGCTCTAGGTTGGTCGTCA 3326 33 100.0 34 ................................. GATGCATACTGCAAATACATAGACATAGCAGGCA 3259 33 100.0 33 ................................. TGCAATGAGCTACGCGACTACAACAGCGTAGGT 3193 33 100.0 34 ................................. CTACTCCAAGCGTCTCTCTAAGGACATGGACAAG 3126 33 100.0 34 ................................. CCTATTAGTATAGTACCCTCTATTGTTGGCGCTG 3059 33 100.0 33 ................................. AGCAGTTGCCCCTCGTAGTCGGCAATCATACCA 2993 33 97.0 34 ..................C.............. GCAAGATAGCCAAGCGAATACCCAACGGGGGCTT 2926 33 100.0 33 ................................. ATTAGACTGAGTAGTAACATCGACATTACGTTC 2860 33 100.0 30 ................................. TAGCCGATCCATCATCAGACAAAACAACAA 2797 33 100.0 35 ................................. ACTTATTGAAGATCTATAAACTATGCCAAATTTAA 2729 33 100.0 35 ................................. TTGTAGCTATTGGAGTGCTTTTGGTCTCCTTTGGT 2661 33 100.0 35 ................................. TTCTGTACTTTGACGTACAATGATACAGCTTTGTT 2593 33 100.0 33 ................................. GCCTGGCTCTAGGTGATCCCAAAACCAGCGTAT 2527 33 100.0 34 ................................. TTTGCAAACCAAACAAAATGAACAAATCAAGCAA 2460 33 100.0 34 ................................. ACGGGCGTAACCACACGGGACGACCTCAGCATGC 2393 33 100.0 34 ................................. ACGTACATCACATTACCAATGTATTTGCGCAACT 2326 33 100.0 33 ................................. TTATTGATCTGACTAAACATCGGCACACCAGTA 2260 33 100.0 35 ................................. CAGAAAGAGTATATGAATAACCCGGTGACCGAAGG 2192 33 93.9 35 A.....T.......................... CGATGCCTTCTGCCCCCACCTCTAAAGAGGTAGAG 2124 33 100.0 34 ................................. AAGGTAGCTGGTGCAGCTGCTAATGCGGCAGGCG 2057 33 100.0 34 ................................. TTATAAGTCACTGACAATACATGATTATCAATAG 1990 33 100.0 34 ................................. CGCCCTCTCTCCAAATGAGTTGATGCAACCTCCG 1923 32 84.8 0 ..........A......-............CGA | ========== ====== ====== ====== ================================= ==================================== ================== 61 33 99.6 34 GTCGCACCCCGCACGGGGTGCGTGAATTGAAAC # Left flank : ATCCAAAGCTGATGTATCTACTTGTCACCTACGACGTGAACACCGCCTCGCCTGATGGGGCGAAGCGACTTCGCCAAGTGGCGAAGATATGCCAAAACTACGGCCAGCGTGTCCAAAACTCAGTCTTCGAATGCCTCGTGTCTCCCGCCCAAAGAGTAGAGCTGGAGGCTGCGCTCACGGACACGATCAACCTATCGAGCGACTCCCTGCGCATCTACCACCTCGGCACCAACTACCAGTCTAAGATCACCACCATGGGCAAGACGAAAGGCGTAGATCCCGAGGGCGTGTTGCTCATATAGCACTCAGACAAGTTCTCCCTTGTACTTCTCTGCGAATGCCAAGCGATCAGAGAAAAGGCAGACTATTCGCACAGGTTGATATACAAGCACATACCGCCTCGCAATCACCGCCAACGCACCGACATACCCGCTTGTAGTCTTCTATTCGCAATGGATCAACGTCTAACCTTCTATTTATGCGTACCTTTGGGCATCGAT # Right flank : TGTAGGTGCTGGCTACGGTACTTCAGGAAAGTGATTTTGCAGTCGAGACAAACATGCAGTTGGCTCAAACACGATGTTGGTACAAGCACGATGGCAGCTTCCATGAGCGGAGACGCTTATGGAGGCTGTCTTTATGTTTGGAAAACTAATACAAGCTAAACAATGAAAAGCGGAACTTTACGCTCACCAGACTGTGAGACGACGAGTCTTGGTTTTCACTGAAAAGCTGATTTAGTCTCGAAGGTACGCTACGCATGGGATAGCCCTATTCCTGATCTCTAAGGGCTAGACGATTGTTGTTAGGCAAGGGGGCGGTCAGATGAGTGCGCGGCGTCGACCGGTGGCGTAGAGGAAGGCGATCTCGAGGAGCCCCGAGAGGATGACGATGACGACGAAGGCGGTCAGCTCAACCTGCAGCAGCACGGCGACCCAGGCGCCAAGCGCGATGACCGCTAGCGAGAGGAGTTGGTTGACGAAGACCTCACGATTGCGCCCATTGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCACGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //