Array 1 176762-175145 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVR01000005.1 Salmonella enterica strain BCW_6283 NODE_5_length_340113_cov_2.92276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176761 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 176700 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 176638 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 176577 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 176516 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 176455 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 176394 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 176333 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 176272 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 176211 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 176150 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 176089 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 176028 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 175967 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 175906 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 175845 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 175784 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 175723 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 175662 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 175601 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 175540 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 175479 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 175418 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 175357 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 175296 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 175235 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 175174 29 93.1 0 A...........T................ | A [175147] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194040-193402 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVR01000005.1 Salmonella enterica strain BCW_6283 NODE_5_length_340113_cov_2.92276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194039 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 193978 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 193917 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 193856 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 193795 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 193734 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 193673 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 193612 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 193551 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 193490 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 193429 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //