Array 1 128988-129686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIH01000012.1 Streptomyces sp. NRRL F-2202 contig12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128988 29 100.0 32 ............................. GCTTTCGGGGCGATCCTGGCTTACCGGGCCGT 129049 29 96.6 32 .........A................... AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 129110 29 100.0 32 ............................. ACCCACTGGAGTGCCGACTTCACCGTGGACAC 129171 29 96.6 32 .................T........... TGGAGTGGAAGGCAGCCACCGTTCGTCAGTTC 129232 29 100.0 32 ............................. TCTTCTACGTCACCTCCGACATGACGGCCCTG 129293 29 100.0 33 ............................. ATCCCGGTGAGGACGCAGGCGCAGACAGCGCCG 129355 29 100.0 32 ............................. GCCGCGAGCGCATCGGACGTAACACGCATTCT 129416 29 96.6 32 ..............G.............. CACTTGTTGTCGAGGTACATGTCGTAGCCGTT 129477 29 93.1 32 .C..........................T CGCGCAGGATCAGCAGGGGTTCGTGGCTGGTG 129538 29 100.0 32 ............................. GGAATTGCCACTCGTATGCTCGTGGATTACGA 129599 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 129660 27 82.8 0 ........--.....A.....T...C... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.1 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCGAGCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCCGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGATGGGCTGCCGCCAACAGTCCGGGGTGCGAACGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGGCAGATCCAGGAGGTGCTGACTTCCGCCTACCTGGCAGCGCATTCGAAACTTAAGGCCGCATATGCCCGACTCTCAAGAAGTTCTCCAAAACGACCTCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : CTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134093-134671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIH01000012.1 Streptomyces sp. NRRL F-2202 contig12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 134093 30 90.0 31 .C.........A.................A CTCGTAGGGTTCACCTCCTATATTCCCCCTA 134154 30 93.3 31 .C...........................A TGGATGTGGCGACGGGCCCGGAGGGGTGGGA 134215 30 93.3 31 .C...........................C AGCTGGCCCGGCCGGCACGAGCCGATGGTTG 134276 30 96.7 32 .............................C CTTGCTCCAGCTCACCACCGCAGACGACTTCG 134338 30 100.0 31 .............................. GAATGGACACTGCCTACACACCCCCGGCGCG 134399 30 93.3 31 ........T....................A CCGCCCACACCTCGGCGCAGAGCGGGGCGGA 134460 30 100.0 31 .............................. TTCCGTCGCCGTTCGTGAAGCACTCGCCGCC 134521 30 93.3 31 ...................A........T. ACCTCGGCCTTGTAGAAGCAATCCTGTTGAA 134582 30 96.7 31 ..................A........... CTCTCGGCCTCGGTGAGCAGCACGGCCAACA 134643 29 93.3 0 .........................-...A | ========== ====== ====== ====== ============================== ================================ ================== 10 30 95.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGACAGAGCCACGCTCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGCGCCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGCCGCCCTCCACGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GCGGTCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 137956-139083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIH01000012.1 Streptomyces sp. NRRL F-2202 contig12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 137956 30 96.7 32 .......T...................... ACCCCGACGACACCCTCACCAACCAGAGAGAC 138018 30 96.7 31 .............................A TGGTCCGCGACGCCAACCGGTCACTGAACAA 138079 30 96.7 31 .............................C GCTCCTGCTCGCTCTCCTCGCCCAGCGGGCC 138140 30 93.3 31 .........................C...C CGCCGCAGGCCGCCGCGCACACCTTCCGCAT 138201 30 96.7 31 .............................T GCGACACGGGGCTCCCGGCCGCCGACCCGGA 138262 30 96.7 31 .............................C AGCGGGCGCACTTCGAGCAGCGCCAGGCCGA 138323 30 93.3 31 ...............C.............T ACGACGTGCCCGGCGATGACCTCCCGGACTA 138384 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 138445 30 96.7 31 .............................T GGGCGGGGCCCTGGGCGCCGACGCTGCTGGT 138506 30 100.0 31 .............................. GGAAGGGCGGGATCATCGAGGCGCGGGAGCT 138567 30 96.7 31 .............................A CCGGGATGATCATCCCGAGGATTTCCGGGAG 138628 30 100.0 31 .............................. GCACGTTGCCGACGGTCAGGTCGAAGGTGCC 138689 30 100.0 31 .............................. CCATCGTGACGGGCGCACGTGCGATCACCCC 138750 30 90.0 31 ..A.....A....................A TGGCGATCGACGCCATGCCCAGCTTGGCGGT 138811 30 96.7 31 ..A........................... GGTCGAGCGGGACCGCCAGCTCACGGCGATG 138872 30 96.7 31 .............................C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 138933 30 96.7 31 .............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 138994 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 139054 29 80.0 0 .........C..-GT......C.....T.. | G [139062] ========== ====== ====== ====== ============================== ================================ ================== 19 30 95.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TGCGTCGAGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACATCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGCGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4565-5328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIH01000042.1 Streptomyces sp. NRRL F-2202 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4565 30 93.3 31 ...A.........................G TCGAGTTTGGCCTGGACGTCGCCACGGGCAG 4626 30 100.0 31 .............................. GGTAGGCGTCGTCGTCGACCTTGCCGAAGGC 4687 30 96.7 31 .............................C CGCCGCCTGCGTCTGCACGGTCGGGGGCTGC 4748 30 93.3 31 .............G...............C GGCTCGACGTCGACCAGCTGCGGCATCCAGT 4809 30 93.3 31 ....G........................G TCACGCTGTCGCCTCCTTCCCGTATCCGAAT 4870 30 96.7 31 .............................A CCATCCGCGCGAAGAACGGCACCCGGAAGTG 4931 30 96.7 31 .............................G GGGACGGGATCATGGTCGCGGATCTCCGCCT 4992 30 100.0 31 .............................. CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 5053 30 93.3 31 ............................TC CCGGCTCGTCCAGCAGCTAGTGGTAGCAGGG 5114 30 96.7 32 ...........A.................. CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 5176 30 90.0 31 .........A...............C...C CGGGCGAGGGCGGCACCATGACGCCCGGCCA 5237 30 93.3 31 ......................C......G CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 5298 30 86.7 0 ...T......T...............A.T. | C [5323] ========== ====== ====== ====== ============================== ================================ ================== 13 30 94.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAAACCGTCGAACCCGCCGAACCCCAACCACGAAGCCCCTCCCGAAAAGGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTATGACCACTTTGCCCCGGAGAGCGAGATATGCCAGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACT # Right flank : TGTCCCAAGTCGAGGAGTCTGCGGACCTACCAACGCAGTCGAGGCAGTAACTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCCCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCATTCGGTGGCTGCGCGATGCGACTAGCGCGCCCACGCCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCACAGAGGCGCTTGTCACCGCTCTCCGGAATGATCTTTACGCCCGTTATGCGCCCATAGGGTTACGGGGATCGAGCACGACATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTGACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATTTTTCTGAGCAGTTGGCATGGCGCCGGCTTACCGCGCAGCACGGTGACCGGCTCGGACAGATC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6484-7245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIH01000042.1 Streptomyces sp. NRRL F-2202 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 6484 30 96.7 31 ...............A.............. TCGGACACGAAGTTGGGGGCGCCCGGAGTGT 6545 30 93.3 31 ...............A.............C GCGCGGAGTGCGCTATTTTCAATCCTGGAAA 6606 30 93.3 31 ...............A.............G GGTTGAGCCCCGATGTCTCCGCCTGGTAATT 6667 30 93.3 31 ...........C.................C GGCCGCCGGAGAAGTGCCCCCATCCCCGGCT 6728 30 93.3 31 ...........C.................C GGCCGCCGGAGAAGTGCCCCCATCCCCGGCT 6789 30 96.7 31 .............................C CAGCGGACGTGATCCGCGACGGAGTTGGTGG 6850 30 100.0 31 .............................. GACCCTGGCCCGCGCGATGGTGACACGAGGC 6911 30 100.0 31 .............................. GGGCGAGGATGAGACCGCCGTTCTCGTTCGG 6972 30 93.3 31 ....................A........C TCGCCGATCTGCTGTCCGGCGCCGTGGTGGC 7033 30 83.3 31 ..............G...CA........TC CGGTGTACTTGTCGCCGTGGGAGACGAGCAT 7094 29 80.0 33 ..T.....T.....G........-.A...G CAAAAAAACTTGAGAGTATTAGTTACGTTGAAA 7156 30 90.0 30 ...........A............CC.... GATGCCGTCCCTCATCCTCGGCCGTGCAGC 7216 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ================================= ================== 13 30 92.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGAGAGCTGGCCTTCCTGCATGACCGCACACGCGTCAATGAAGGCCGCAAGCAGACATACGGCACACAGATCGCCGGCGTGAAAGACGGGGCACCAGTTCCGTGGCCTTGCGACGAGCCGGAACGCATGGACGAACTCCGCGCCGAAGTCGGCATCGAACCCTTCGACGAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCCCGTCCGGCGGGTCCTGCCCTGAGGCTCACCAGCCATAAGCATGATCCCCCGGGCGGGACCTCCACCGAGCTCCGGGTGAGGTGCAACAAACGCACCACACCCCGGGGCCAACGCCTACGGAGGACAGAGCCTCACTTCTTCCATCGAAGCTGAGCCGGCGAAGCTGGCGGCGGACAGAATGGCATCAGCCGAACCACACGTGACCGCTCTGCGACGGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : CATAGATTGCCCCGGCCGCCCCGGAAGGAATGATCAAGAATGCGACCCGCCCGATTCCAGGACTTCGCCGTAGAAGCGCTCGCCAAGGCGCCCGACGTCAAGAGCGTCGAACCGTGGCAGGAGCCGGACCGTCCCTTCGGCGTGCACATCCTGTTCATGAGCGGTGCCCAGATCTGGGCGGCCATCACGGCCACAGCCGCTCCCGGCGAGGACTACAAGCAGCCGGAGAACCCTGTCAGCTATGAAGCTCCCGCCGAGGTGGCGTACCCGGACCTGTATGAGGGCGGGAAGGTCACCCCGCAACTGGCGGAAAAGTACCTTGCCGCAGCTTTCACGAACAGTGGCTCACCGGAGATCGAGTCGGTATACGCCTACTCTGTGAAAGACCCCGCCACCGCTCACCCTGGCCTCGGCCTGCGGTTTCACAGCGAAGCCCGGATCCAGTTGCTGTTCCAGCACACCGCCCGCTCCGGCCAGGACAAGGGCAACTCACCTTTCGA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : GTGGTCCCCGCGCACACGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 32620-33268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIH01000042.1 Streptomyces sp. NRRL F-2202 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 32620 30 96.7 31 ...C.......................... CGCTGGAAGGGAACGCCTGATGACCGAGCCG 32681 30 93.3 32 ...C.........................T CGGTGGTGCCCATGCGCGTGGTGCAGTCGGGG 32743 30 93.3 31 ...C.........................T CGGCGCGGAGGTCGAGGATGTCGACGCGGAG 32804 30 96.7 31 ...C.......................... GGTCGATCACGGATGTGGCGACCCGCCCTTA 32865 30 100.0 31 .............................. TGCCGGTGGCCTTCTTCCTGCCGGTGGGGGC 32926 30 96.7 31 .............................T ACTGCTCGTACGACTTCGCACCCACCAGCCG 32987 30 100.0 28 .............................. GGCCGTCGGATCCGACGCCGAAGCCGGT 33045 30 90.0 31 CA...........................A GGGGGTCGGCCCGGTCGTAGGTCTTGCACTG 33106 30 96.7 42 ................T............. GGTTCGTCGTGCCGTAGTCGACCCCGACCCAGTGCCGGCGCA 33178 30 93.3 31 ............................TT CTCCGTGACAACCTGACCCCACTCACGGCCT 33239 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== ========================================== ================== 11 30 94.9 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCACACACCCACGGCGGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGACAGGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGAGCGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGTCCGGGTCCCGCAACCACACTTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //