Array 1 7673-9413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCA01000019.1 Salmonella enterica subsp. enterica serovar Worthington strain 2012K-1221 NODE_19_length_22363_cov_4.31237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7673 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 7734 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 7795 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 7856 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 7917 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 7978 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 8039 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 8100 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 8161 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 8222 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 8283 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 8345 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 8406 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 8467 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 8529 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 8590 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 8651 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 8712 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 8773 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 8834 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 8895 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 8956 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 9017 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 9078 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 9139 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 9200 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 9261 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 9323 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9384 29 96.6 0 A............................ | A [9410] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9595-10479 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCA01000066.1 Salmonella enterica subsp. enterica serovar Worthington strain 2012K-1221 NODE_66_length_11611_cov_4.43759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9595 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 9656 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 9717 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 9778 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 9840 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 9902 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 9963 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 10024 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 10085 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 10146 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 10208 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 10269 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 10330 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 10391 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 10452 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //