Array 1 289006-291742 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZO01000001.1 Campylobacter geochelonis strain RC11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 289006 37 100.0 39 ..................................... AAGGATACCCAGCCAAAGACTGCCTGGAAGTACGAATTC 289082 37 100.0 46 ..................................... ACCTTCTTCAAAAATAGAGATGGTGTAATACCATCCCTCTTCAACG 289165 37 100.0 43 ..................................... AGGGAATACTCCCTAACTTCACGTTCTCTAATTACTCTTTTTA 289245 37 100.0 41 ..................................... TTTCTAGATCGCTCTTGTACGTATCAAACTGTACTAACTCG 289323 37 100.0 42 ..................................... TGTCATAACGGCGACAGCACTGCATATCTTTAATATCTCCTT 289402 37 100.0 38 ..................................... TCCTCACATAGAAAGTACCTTTCTGCACTCTCATCTAA 289477 37 100.0 41 ..................................... TAGCAAGAATACTTTCATATGTACTCTTGCTAAACTTAGGA 289555 37 100.0 36 ..................................... AAATCAATTTAAACTTAAATCCACGTTCCAACCCCT 289628 37 100.0 38 ..................................... TTTATACAGTGCCGCCAAAAACTCCTTTGTATCCTCCA 289703 37 100.0 45 ..................................... AGTATCTGTCAGTTTATATGGGATTCCTTGAATCCTATTTATTAG 289785 37 100.0 41 ..................................... TACAAATTCCACCTGTATCTCGGAGTAATACCAAGATACAT 289863 37 100.0 41 ..................................... AGAACTTAGCATCTGTAGGCTAAATGCGTTTAATAAATATG 289941 37 100.0 37 ..................................... ATTGTTCCATAGACTGTTGTATTTATCTTCAAACCCC 290015 37 100.0 35 ..................................... AAGATGGACGTGTCGCTCAGCAGATTCCGAGTCGA 290087 37 100.0 40 ..................................... CAGCTATTTTTTCTTGTAGTGTTTTTTCCATTTTTATAAA 290164 37 100.0 38 ..................................... CTCCTTATGGTCAGAGATATGCTTATAAGCATCTCCTC 290239 37 100.0 45 ..................................... GCTTTGTTGGCGACTGCTGTCGCTACTTGTTGGTCTGACAATTCC 290321 37 100.0 40 ..................................... GCTTTATATGTATAGCCACCATTAACTTAGGTATGTTGAA 290398 37 100.0 38 ..................................... AACACAGCCTGAAAGGCTGAGTTCCTCTCATAATGGAG 290473 37 100.0 48 ..................................... CTTTTATACTACTTCTCATTTTTTATCCTTTATATATATATATATATA 290558 37 97.3 43 .................A................... TGCTGTCGCTACTTGTTTCTCGGTCAGTTCCATCTCAGACAGG 290638 37 97.3 37 .................A................... CCACATATTTTTTAAAATCAATTTAAACTTAAATCCA 290712 37 100.0 43 ..................................... TTGTACTCTTTTTCAAAATAAATTTTTTCCATTTTTTGTTCCT 290792 37 100.0 46 ..................................... ATTCCTTGAATCCTATTTATTAGGTTTAGGTTTACCTCTTTATCAT 290875 37 100.0 40 ..................................... GGTATAGTACCATCCCTCTTCAACGCATTCTTGGTATCCC 290952 37 100.0 40 ..................................... GCCCTTTAATAAGCCTTTTTCTCCACTGTTTGCGAAGACC 291029 37 100.0 35 ..................................... GTTGTTGTCATAAGTGCAACAACACTGCATATTTT 291101 37 100.0 37 ..................................... CTCTTTATATTCCCACCATTCTGAGCCGTCATACTCG 291175 37 100.0 39 ..................................... TATTTGGCACATTCTTTACGGTATATTCAACATATTTTC 291251 37 100.0 39 ..................................... AGAATACTTGTTTTCTTCTTCAAAAATAGAGATGGTGTA 291327 37 100.0 35 ..................................... GTTGTTGTCATAAGTGCAACAACACTGCATATTTT 291399 37 100.0 36 ..................................... TTTATCAAGTTCGATTGCTTCTTGCAAGATTGTCTC 291472 37 100.0 43 ..................................... ACGAATTCCACCTGTATCTCGGTATAATACCAAGATACATTAT 291552 37 97.3 38 .................A................... CTAAGTCCAAATTTGGATAATCTTAGAGATTAGATAGA 291627 37 100.0 42 ..................................... CTATCTGGAATTCATAGCCTTCATCTGTTTCGTTTACTAACT 291706 37 91.9 0 .................A................G.T | ========== ====== ====== ====== ===================================== ================================================ ================== 36 37 99.6 40 GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Left flank : CTATAAATTTTTAAACACGGTTTTTATTTTTGGTTCCGCCATGATTTTAATATATTTTTAACAAATTTAGCACTTTAGAGTTTCTAACTTTTTATATTTTAAAACTCCCAAATTTAGAGCTTTTTAGTTTTTCGCTCTTTTAAAAAAGTTAGAAACTCAATAAATTTAGCATTTTTAAAAACACACTTTCTAATTTTTATAATTATTTAAATTTTAAAAGCCCATTTTTGCGGTATTTTAAAACTTAGATTTTTCTTAAATTTGGAAACTATACGCAGTTTAAAAATTTCCCCATTCGACTTTCTAAATTTTTAAATCTCAAAATTACCACTCTATGGACACTTTAAGGACAAATTTAGCAAAACTATCGATTTATACATTTTAAAAATCAATAGAGTTTCGAATAAATTCGCTCAAATTCAGCTCTCACAGGCTTTTGCTTAAAGAATTTATAATCATTAAAAAAGTATAATCATCTTGCAAATAACTAAATTTACAGT # Right flank : TAGAATTTGCATATAAGCAGCAGGTTTTATAAAAATTTAGCTTTAGCCAAATAAAAAAGAGGTATAATTAAATTTAAATTATAAAACTTGGAGAAGATATGGGCGAATTTTTTATGTCTGCTATAACTTATATGGACTACATTACTATTATCTTTGCTTTTGCGACGATGTTTGCTGTTTTTTGGCAGTGGTATTTCAGAAGAAAAGACAATAACGAAATAACAATTTATATAGATAAAGATGGCGAAAAAAACGAGCTTCCTATCAAAATTTTGCGTAAAAATATCTCTCGCGCTGAGGTATTTGGCATTTTAGGGGCTTTGCATACTGGTCAACAATGGTCGATAAAATACACTTCAACAGTAGAATTTATGCAAGATATTTTACAAATTCAACTGTATAAAAAAGATTTTTTAGAGATAAAACTAACAAGCAATGACAACTTCCAAACAGATATCGACTACTTATAAAAACACCTTTTATAAAATCAAATTAAAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 360456-362767 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZO01000001.1 Campylobacter geochelonis strain RC11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 360456 36 100.0 29 .................................... TGATGTTAAATTTAAAGATGGCTCTAAAA 360521 36 100.0 30 .................................... TTTAACATCTATATAATTAAGAAGTAATAT 360587 36 100.0 29 .................................... TGTAGGTTCATCATTATATACTAAAGCTG 360652 36 100.0 28 .................................... TGCAGGATTTGTCCTATTGTATCAGGAT 360716 36 100.0 30 .................................... ATATGATTCAAAGAAAAATGAATATTATAT 360782 36 100.0 30 .................................... TATAAATTTCTTAAATAACTATGATAAGAG 360848 36 100.0 30 .................................... TTTTGTTTTCAAGTTCTTTTATCACTATTT 360914 36 100.0 30 .................................... CAAATAAACGTGTAGTATGGCTAAATAGTC 360980 36 100.0 29 .................................... TTATTGTCCTGTTCGTACTTTTGACATAA 361045 36 100.0 29 .................................... TATGTCCTATTTGTTTCCATACTCTCTTA 361110 36 100.0 30 .................................... TCTTGCCTTGCCTTTTGCACCAAATTTAAG 361176 36 100.0 28 .................................... AGTGGTGGTTCTTTGATAGTTAATATTA 361240 36 100.0 29 .................................... AGGGAGCTGTAGCGGAGCATTACTATTGT 361305 36 100.0 30 .................................... AATGATAGGTTTGAATGCACTTGCAGACAT 361371 36 100.0 29 .................................... TTAATTGAGTATAATAAAATATATTTTAA 361436 36 100.0 30 .................................... TAGGTTCGTAGTTTGTATTATCAGAAATCA 361502 36 100.0 30 .................................... CAAGCTTTGCTAGAGCATCTTTTGTACTCA 361568 36 100.0 29 .................................... ACAGGAGACGGCTTGTATGTAATAGACTA 361633 36 100.0 29 .................................... TAAAAACTTAAGTCTATTTTTAAGTACTA 361698 36 100.0 30 .................................... TGAATAAACTTGCTGCCTTACTCAACTTTG 361764 36 100.0 30 .................................... CGATTTTTACATTCATTCTATCTTTATCTC 361830 36 100.0 30 .................................... TTCTTTCAGAATATTTAAAGCTGTTACTAT 361896 36 100.0 30 .................................... CATCGCTTAAAATTCTGCCATTGACTCCTG 361962 36 100.0 31 .................................... ATGGGGTTTTCTAGCTTTTTAGCAAACATGG 362029 36 100.0 29 .................................... TGCACTTTACATAAAGCTTCAGCGTGATG 362094 36 100.0 29 .................................... CTGTATAAAATGCTATACAAAGATAGACA 362159 36 100.0 15 .................................... AAAAAGAGAAAGGCA Deletion [362210] 362210 36 100.0 29 .................................... TAATCATTTCTGCGATTTCGGGGTTATCG 362275 36 100.0 30 .................................... TAAAGGGTAAAAAATGGCAAAGAAAGTTGT 362341 36 100.0 29 .................................... TCATTTTTATAATATAATGTCAAGCGATA 362406 36 100.0 29 .................................... TTTCTTTTAAATTCATCTTCTTGATTATG 362471 36 100.0 29 .................................... AATACGCTCAAAGGCGCAATGCTTTTAAC 362536 36 100.0 29 .................................... TTAGCTATCACTAAAGGGCTTAAATTCCT 362601 36 100.0 30 .................................... AGACAAATGAGTATATACCTTTTACATACG 362667 36 100.0 29 .................................... TAACCTAAGTTATAACCCCGCCCTTATAA 362732 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 100.0 29 GTTTGAGAGTTGTGTAAATTTGAATGGTAGTAAAAC # Left flank : AAGAGATGGTTTTGAAGGATTTATATCAAGAAAGCCATAAAATTTTAATGGCTTTAAATCGATTTGCAAGTAAGATTGTAAGCAATGTTGACTTTCCTATAAGTTATGATGATATTGAGATCGAAGCGGTTTTAAAATCTTTAAATATTAAAATAATAAAAAGCGATAATTTGCTTGAGCAAATCTTAGATTTGATGATTTTAGAGCGCGATTTTTTACAAACTAAGCTTTTTGTATTTTTTGGATTAAAAACTCTTTTGACCAAAGATGAAGTGTCGCTTCTATACGATGAGATAATTTTGGGGCAATTTAATGTACTTTTAGTAGAGCCATTTTATCAAGAAAGATTAGAGTGTGAAAACATAGTTATCATAGATAAGGATTTTTGTGAGATTAGAAATTAAAATAGTTTTAGATTAATTTTATGTCAATATGGTTAAAATTAATAGTTTGCTATCATAATTTAAGTAGGGTTGTGTCTACTAAACTCTTGATTTGAG # Right flank : CAAACTCTTTATTTATGTGTGATGAAAAAAGGGTTCGAGAGTTATTTAATGCAAATATAAGTAATAAAATTTATTAACCATTTTGATATACAATCATCAAAAAGGATAAAAATGTTAAGAAAAATTGACCATTTAAATTTAGGTTCAAGCAACCTTGGTCGGCTACAAAGCAAGTTTCACTTCTCTTTTGCGCAGTATTATAACCCACAAAACATACATTTTGGCGTACTTCGCGTGATAAATGATGACACGATAGCCCCAAAAAGCGGATTTGGAACGCATCCGCACGAAGATATGGAAATCATAACTTATGTCATAAACGGCACTCTTACTCACAAAGACAGCATGGGAAACGAGCGCTCGCTCGGGCGAGGAGATGTGCAGTATCTAAGTGCTGGAGTTGGCATAACTCATAGTGAGTATAACAACTCAGATGAGGTTTTAAGACTGCTTCAAATTTGGATTTTCCCTGATAAAAAAGGGCATAAACCAAACTATGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTGTGTAAATTTGAATGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 121552-121909 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZO01000006.1 Campylobacter geochelonis strain RC11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 121552 30 90.0 35 C....................A...A.... GTCATGATTACATATGTTCCATCTTCATCTAAAAC 121617 30 100.0 35 .............................. TATCTTTTAATAATCTCAAGAACTTTAGCCTTATC 121682 30 100.0 36 .............................. CGCCTAGCGAGGCAATTTCTATAATACCTGCTAGTT 121748 30 100.0 36 .............................. GTGCCTTTGGCTACTATATCTTGCAAATTAATAAGA 121814 30 100.0 36 .............................. AGTGAAGCGAAGCGGAAGGCAGTAGAAATACTGATG 121880 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.3 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : AACAAAACAAATCTATCATCTCCTAAACTTATGATTCCAGAATGCCCTTGTGCTGGTTGAACGCTAAAAGGATACATCACGCCTGTTGGTCTGCCATTTGACACACCCTCAAAGGATTTTAGTCTATCGGTTCGCTTTGTTTTTTCAAATTTACCATTTGTGCGAAGCAACTCTGGCGCATCATCTGGGACATTTATAAACGAAGCAGCTGGCAAAATAGCGTGTCCTGCTAATGTGGCGCTAAATTTTTGCTCAGCTAAAAGCTGTGAACCAACTAAGATAAAAGCTACAAAACAGCTAAATTTTTTCATGTTTTCCTCCTGTAATTTTAAGAGAATACTACAGATTAAAAATAACTTTATAGAAACATTTTAATACTTTAATTATTTTTATAATATAAACATAGATGAAATTTAAGATAATAAGATGTTTTTGTTGCTTTGCAGCTAAATTTTGCATTAAAAATCTTTAAGTAGACTATAAAAACAGATTTATAAAAT # Right flank : TTGTTTGGTGATAAGAAAATTTAGACATTTAACCTATAAAATTTCCGTGCTATAAGGAAAAATTTAGATAAATTCTAAAAACTTATCTAAATTTATTTTTTATCTATAAAATTCCGCACTCTCTTTTTAATACAAATTACATAAATATTTATTATAATATAAACAGATTATTAAATTTGGCTCAAGCCAAGTTAAAAACTTTTAAAGGGGTTTTTAACTACTATGCTGTCGATGAAAAACAAATACATATACCGTTCCCGAATTTCTGAAAAGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 34314-41503 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZO01000004.1 Campylobacter geochelonis strain RC11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 34314 30 100.0 37 .............................. AGACTTGCATTTACATTAAATAACCTTAATGTTTTAT 34381 30 100.0 34 .............................. GTGACTGTCTGAACACCTGAAATTTTCAAATTCG 34445 30 100.0 36 .............................. TATCTACAGACAGATACAAGCGGGTATTATAAAGTT 34511 30 100.0 36 .............................. GCTCTAAACCATCCATAATGCTCATAACTTGCTACA 34577 30 100.0 37 .............................. CCTTTATTAAGTTTGTTATACTCGACAAAAAATATCT 34644 30 100.0 37 .............................. TTTTAGTGAGGCGTTATAGCCTGTTATGTTTGTAGCG 34711 30 100.0 37 .............................. CTAAGTAAAGGCTTGTAACTTTTTGCTGTTTTTCCTA 34778 30 100.0 35 .............................. CACCCTCAAGCGTGTTTTTTACGCCGCCATCCCAG 34843 30 100.0 34 .............................. CGCACTCTTTTACCAGTTCCAAAGGCTTGAATCT 34907 30 100.0 36 .............................. TCAAATTCCTCATATCTGTCCTGTATAAAGGACAAA 34973 30 100.0 37 .............................. TTAGATAAAATATAGCTTTGAGCATATACTTCATCTT 35040 30 100.0 37 .............................. CGATAGATTTAGTTTTAGATGCATGGGATTTAATAAC 35107 30 100.0 35 .............................. TCTTTTCCGCTACTATAGTAGCGTTGGCTTTCGTA 35172 30 100.0 35 .............................. CGCAAATTTATATAAGATAAAAAAGAACCTAATTT 35237 30 100.0 42 .............................. TGTTTTATCATTAAATATCAACGCCCCTTTAATGGTGTTACA 35309 30 100.0 35 .............................. TTGTTACGTGCAGTTGGATTTGTAGAAATTCTTTC 35374 30 100.0 36 .............................. TTATTTATCTCCTATGTCTGTGCAAAATTTAAGAAG 35440 30 100.0 35 .............................. CATACCCATCATCAAAATTAATAATATTCTTTTCC 35505 30 100.0 36 .............................. TTTTCATAAATTCAAAATCTCCTGCGATAAATGTGT 35571 30 100.0 35 .............................. TTAAATCGATTAAAACAACTTAAAAAATACTTAAA 35636 30 100.0 36 .............................. ACTTCAAATTTTAAACTACCAGAATCACCTACATAA 35702 30 100.0 34 .............................. ACAACCCACCGTATATAAATAAAAACGGCGAATT 35766 30 100.0 34 .............................. ATGGATTTGTGCAAAGTATGAGTGTAAAAGATGG 35830 30 100.0 35 .............................. CCAACTTTAGTAGAAAAAATTAATGGCGGAATAAA 35895 30 100.0 36 .............................. ATGTATCTACAACTTGCAAACGAGATTATAGGGGAG 35961 30 100.0 35 .............................. CCCAGTAGGCGATGGCACTTTTTGGAAAACAATCG 36026 30 100.0 36 .............................. ATTTTAAATAGCTTATTTAGCGATTTAAAGACTTAT 36092 30 100.0 36 .............................. TAAATTGTATGTCTCTAATACTTATGATTTTTGGAG 36158 30 100.0 35 .............................. AATGGGATAACACTGCAGTGGGGGCAAATAGTAAC 36223 30 100.0 36 .............................. AAGTGCGCAACTAGGCGGATACCTAAGCGATGGTGT 36289 30 100.0 36 .............................. GCTGGCATTTTATTAAAATTAGTCACAAAATCTTTT 36355 30 100.0 36 .............................. TAAATTGCAACAACGTTATCTAAATCACTTCCACTT 36421 30 100.0 37 .............................. AATACGAGAGCTTGAGTGGAGTAGGGTAGATGATAAA 36488 30 100.0 36 .............................. GTCCAGTCGCCATTTGTATCTTTTGCAAAGATATTG 36554 30 100.0 36 .............................. AGAAAGACAGATTTTAATAGAGCAAGCTAAAGCAGA 36620 30 100.0 34 .............................. ATGCACCATTTAAGAACAACTAATGCACCTAAAG 36684 30 100.0 34 .............................. TTTTGTAGAATTGAGTATAAACTCTATCAAGCAG 36748 30 100.0 36 .............................. CCACTTGCAAGAGCAAGAGCTGGAGTAGAAGATTGA 36814 30 100.0 36 .............................. TCCCCTGCTAAATGCTTAGAACTGTTTGGTGTTTAG 36880 30 100.0 35 .............................. TTAGCAATCTTATAATAGCTCTCTGTACCTACATA 36945 30 100.0 36 .............................. ATTCCTGCTTGGGTAAGTTCGTGGCTGGAAAATTAT 37011 30 100.0 36 .............................. CTACTTCCTATTTTAGCAAACAGCTTTGATGTAAGC 37077 30 100.0 35 .............................. AACATATCAGTTAGCACCCCCATCTGCTCATCAGG 37142 30 100.0 36 .............................. TCTTTAAATTTAACATCAACAATTATTTTTTTATTA 37208 30 100.0 35 .............................. ACTATATAAACCACAATGCCTAAGAATGTAGACCA 37273 30 100.0 36 .............................. GTCGGTAGCAGAAAACTTTTTGTTTGGAATGGATTT 37339 30 100.0 35 .............................. GCTTTTGCCAAAAGATAGAGCGGATCTAAAGCACT 37404 30 100.0 36 .............................. TAAAGCTTTAATGTTTTACTACCTTGAATGCGAAAA 37470 30 100.0 38 .............................. GATGCATACATATCACGAGAGCCATATCCTTTGTTATA 37538 30 100.0 37 .............................. TAGTCTCTTTTTCTTCTACTATATTTGGGAAAATTAC 37605 30 100.0 36 .............................. AGTTTCATTTAGTGTTCTTATATAACCTTGAAGTCT 37671 30 100.0 36 .............................. TCTTTAAAGATACCAGTTAGCACTCCAAGTTGTTTG 37737 30 100.0 35 .............................. TTTAGATTGATATTTACAGGCATGCTTCCGCCACC 37802 30 100.0 36 .............................. ACTGGCTACAAACTCAACTATCGCAAAAAGAACAAA 37868 30 100.0 36 .............................. AATCCATCTAAGCTTCCATTTGCCTTTTTAATACTA 37934 30 100.0 35 .............................. AACTTTACCACAAGCCCCACTACCAACACAACCTT 37999 30 100.0 35 .............................. CTAGAAACTAAATCAATATCAAGTCCTAAAGTAGC 38064 30 100.0 37 .............................. CAATATAGTATAAAAGCAGATGGTGCAACGCTAAATA 38131 30 100.0 34 .............................. GTGTGTAAAGAAATCTTGATTTTCATCTAAGCTT 38195 30 100.0 35 .............................. TTTAGTTTTGAAAATCAGTATCTTAGATTTTCTTA 38260 30 100.0 36 .............................. TCCAAAAGTTAATAGCTTGACTAAATATCTCACTCC 38326 30 100.0 35 .............................. CGTTAGTAAGGTCGGGTATGGGATACCTGTGAATT 38391 30 100.0 35 .............................. CTCTCTAGTTGCTAAGACAACGCTTTCATCTACCT 38456 30 100.0 35 .............................. CCTACTGCAAAAGATGTTAAATTAATTGGCTTTTT 38521 30 100.0 36 .............................. AGATATTATAATTTTGAACACATTTCATCTTATATG 38587 30 100.0 36 .............................. TAGATTGCTATAATCTCTAAAGCATCGTTCTTAAAA 38653 30 96.7 34 .....A........................ TCAATTTCGCCTTTTATGATAATAATTTGATTTA 38717 30 100.0 35 .............................. TCTTTAAGTCGGCTATCATCGATTAAAATCGGTAT 38782 30 100.0 36 .............................. TATTGTTTTTTTATTTGAGTCTCGCTTTTGCTTTTT 38848 30 100.0 36 .............................. ATATTATCTCTCCTACTAGAGAGGTAAAATATACCG 38914 30 100.0 37 .............................. TATCCTAGCCAAAGTTCTAACTCGTCCCCAAAATCAG 38981 30 100.0 36 .............................. TATTCTTGTCAATTCTTTGTCTATTTCGCTAAATCT 39047 30 100.0 36 .............................. TATGTAGTGTTAATAATCGCGCTTGAGTTATCTGGA 39113 30 100.0 36 .............................. AATAGATAAACAACTTGAAGATGAACTAGTTGAAAA 39179 30 100.0 36 .............................. CTATAGTTTGATAATACCAGTGCATTTCTGAAATAC 39245 30 100.0 35 .............................. CGTAAAAATTGTATAACAAACTGTATAACTTTTTG 39310 30 100.0 23 .............................. CTTAACACCCTAAAAAACAAAAA Deletion [39363] 39363 30 96.7 37 ......T....................... TGGTATGGAAATCCAAGCACTGCTTCTAAACACTCTA 39430 30 100.0 36 .............................. TTATCTTCTACTTCTATACCTTCAATATCTGAGCTA 39496 30 100.0 36 .............................. TTGCTAAAAAAATAGCAAACAAAGCCGTAATTGGCA 39562 30 100.0 36 .............................. TTTCGAGTTAATCCATCTTTAAAAGTGGATAAGAAA 39628 30 100.0 37 .............................. AACCAAAATTTTAAACCTTGCAGTTTTGGATAGATTA 39695 30 100.0 36 .............................. AATAATATGTTTGAGCTAGATGAAGAAACGTATGAG 39761 30 100.0 36 .............................. TTTCCAACACTTACACAATTTACTCTATTTGCAACT 39827 30 100.0 36 .............................. TTTCCAACACTTACACAATTTACTCTATTTGCAACT 39893 30 100.0 36 .............................. TTTCCAACACTTACACAATTTACTCTATTTGCAACT 39959 30 100.0 36 .............................. TTTCCAACACTTACACAATTTACTCTATTTGCAACT 40025 30 100.0 36 .............................. TTTCCAACACTTACACAATTTACTCTATTTGCAACT 40091 30 100.0 36 .............................. TTTCCAACACTTACACAATTTACTCTATTTGCAACT 40157 30 100.0 36 .............................. TCTGTTATTTGTTTGTAGCCCAAGAAGTCATTTTCT 40223 30 100.0 35 .............................. ACTCTATTTCATTGTCTAGTTTTTCACTTTCCACA 40288 30 100.0 36 .............................. TTTTAGTTACAACGAGATTATGGGGCTAGAAAAGGC 40354 30 100.0 36 .............................. AACTCTACAAGCAAAACTTTTCCTTATTTTTTTGCG 40420 30 100.0 35 .............................. GCCAATAGAGCATTTTGGATTTATCAGCAGAGTCG 40485 30 100.0 35 .............................. TCAAAGTGGAAAAGAGAAGCAAGAAGTAAGTCTTG 40550 30 100.0 35 .............................. CAACTTGCAAGAGCAAGAGCTGGAGTAGAAGATTG 40615 30 100.0 36 .............................. TTTTTTGAATCAAGGCTAAATCTACTCCACTAGCTA 40681 30 96.7 36 ..................G........... TTTAGTTTTGAAAATCAGTATCTTAGATTTTCTTAT 40747 30 100.0 36 .............................. TCAAAAAAAGATAAAGAAAATTTAGAAAAATATTAT 40813 30 100.0 36 .............................. AGAAAGACAGATTTTAATAGAGCAAGCTAAAGCAGA 40879 30 100.0 37 .............................. GAGTTTGGCATAATGTTAATAACTGGTGGCTTGATAA 40946 30 100.0 35 .............................. TACCACTTTAAACTCGAGCTTGATTTAAGTAGTAG 41011 30 100.0 35 .............................. AAGAAAGTAGCACAATTTACAATCCTTGTTGGAAT 41076 30 100.0 36 .............................. ATTTTCTGGCTCTGATACTATCTGGAATTCATAGCC 41142 30 100.0 36 .............................. GATGATGAGAGCTTTGAGAGTATGGGCGAGTTTGTA 41208 30 100.0 37 .............................. CGCTTTTTACAATAGGTTCGAAAATTGCAAGTGAAAG 41275 30 100.0 35 .............................. TATATTTATGATGGTGATTTGTGCTTTATAGAACT 41340 30 100.0 37 .............................. GAAACTTATCTAAAAGGGGTTGAATGTCCTGAATTAG 41407 30 100.0 37 .............................. AGAACTAGCTAACAAGATTCCGCAAGAGCTGTAATGG 41474 30 96.7 0 .....C........................ | ========== ====== ====== ====== ============================== ========================================== ================== 110 30 99.9 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : AGGCGTGTTACAAAGGTTTTTAAGGTGTGTAAGAAGTATTTTTTACATCATCAAAAATCAGTTTTTAAAGGCGAGATTACACCATCGAATTTTATAAAATTTAAAGCCGAAATAGAAAAAATAATAGATAAAAATATCGATTTTGTTAGCATAATACGACTTGTAAGACAAAGCGATGTGGATGAAATTAGCATAGGTGGAATGGCTTTTGATAAAAATGATATGTTTTTGTAATTTTATTCTTAATTTTGCTTAAAATTTCTTTTGTTTTATAATTTATTTTTATACTTTTTTAGTTAAATTTCAAAAAAAGATTGCTTAAGATTTTTCCAACTGAATTTTTGATAAAATATCTATAAAGGTCTATAATTCGAACCTTTGAGCTCTTTAACTTGTCATTGTTAAAAATTTAAATAAAGGCTGGAAAAATTATCATTATCTCTCCTAATTTTGGTAGTTTTATGGTATTTTGATGTTTTTAGGATATAATAATTATCGTT # Right flank : CGATATAAAAACCGTAAAAACAAAAACACAAAACCAACCGCCACTTCGCAAAATCATCTTGTTAATATAACTTTAATCTTTTATCGCTAAAATTTACGATTATTTTTATTTAAGGAGATTTATGTATCTATTTACTTCTGAAGTTGTAAGTCCGGGTCACCCAGATAAATGCGCTGATATTATCGCTGATAGCATAGTTGATGCGGTTTTGATGGAGGATAAGGATGCTAGAGTGGCGAGTGAGGTCTTTGTCGCAGGCAAGCATATCGTCATTGGCGGCGAGGTAAAAACAAATGCAGAATTTAGTTTTAAAAGGTTTGAGGCCATCGTAAAAGAGGCTCTTAGACACATAGGATACAACGGAAACCCAAATTTTACAAAAGAGCAATGTTTGCATCCAGATGACATCGAAGTTCATGTGCTTTTAAACAAGCAAAGTTCAGATATCAACCAAGGCGTTGATCAAGATGATGGCGAGATAGGAGCAGGAGATCAAGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //