Array 1 122029-123459 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLF010000001.1 Aerococcus urinae isolate Au-07-B93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122029 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122090 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122151 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 122212 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122273 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122334 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 122395 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 122456 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 122517 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 122578 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 122640 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 122701 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 122762 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 122823 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 122884 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 122945 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123006 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123067 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123127 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 123188 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123249 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123310 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123370 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 123431 28 75.9 0 ......-....C.......T.T.A...TG | A [123449] ========== ====== ====== ====== ============================= ================================= ================== 24 29 97.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142409-143167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLF010000001.1 Aerococcus urinae isolate Au-07-B93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142409 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 142470 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 142531 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 142592 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 142653 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 142714 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 142775 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 142836 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 142898 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 142959 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 143020 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 143081 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 143141 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //