Array 1 30804-31255 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHR01000035.1 Moraxella catarrhalis strain F21 B618ctg20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30804 28 100.0 32 ............................ GTTGCATTAGCAAATGCGTTGATTGTTTGTGC 30864 28 100.0 32 ............................ TTATATCAAATAAAATTCTAACACTGCTAAAG 30924 28 100.0 32 ............................ AACATAATAGTCTCCTTAAAACTTCAATTATT 30984 28 100.0 33 ............................ CAAGCAATACCGCTAAATACCGTGCCATGCTCA 31045 28 100.0 32 ............................ TGTACTTGTGTATAAATGCAACCAGTTGGGCG 31105 28 100.0 34 ............................ GCTTTAACCGAACTAGGTAAGGGTGTCTCACCGC 31167 28 100.0 33 ............................ TAGCTCAGGTAGATACGCTTCTGTCTTATAGAC 31228 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATCGGAATGTTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATTATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGTGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46-792 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHR01000024.1 Moraxella catarrhalis strain F21 B618ctg46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 46 28 100.0 32 ............................ TCATTCACTTTCATAGCTGGTGAGTAGTTTAA 106 28 100.0 30 ............................ GAATTCACGTTCATTACACTCTCTACGTTC 164 28 100.0 31 ............................ ATCTTTCTAAATCTGTTCCAGATACGAAAAT 223 28 100.0 32 ............................ AGATTGTCTCCGACCTCTTGAAATGTAGAGTT 283 28 100.0 32 ............................ GTAAGCGTATTGACGACGGTAAACCACCGTAA 343 28 100.0 33 ............................ AATACATAGAAAAAGATTTCTTCTTTTGACATT 404 28 100.0 34 ............................ GACCAAGTAAACATGAGGGAGCAACAAGCTGATA 466 28 100.0 33 ............................ TAGAAATTTTTCTAATCTTTCTAAGTTTGTTCC 527 28 100.0 31 ............................ TCAGGCACATTATCAGCCATACCGCTTTGTC 586 28 100.0 31 ............................ AGTATGTGCGTCAGTAGCTTTTTTATCTCTT 645 28 100.0 32 ............................ GAAGACCAACAAGGTCTAAGCTATGAGTGGGT 705 28 100.0 32 ............................ TGTCGTTATGCTAAGCTCTCGCACCTGTGAGG 765 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTCGCTTAGAAATAGCTCAGGTAGATACGCTTCTGTCTTATAGACC # Right flank : TATAACTTATTTACCTCGTCATCAATTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 65487-60645 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHR01000010.1 Moraxella catarrhalis strain F21 B618ctg13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 65486 28 100.0 32 ............................ TGTCGTTATGCTAAGCTCTCGCACCTGTGAGG 65426 28 100.0 32 ............................ TATAACTTATTTACCTCGTCATCAATTTTGTA 65366 28 100.0 32 ............................ AATAACTACAACTTCTGCTAATTCGTACATGT 65306 28 100.0 32 ............................ GTTATTTAACTCTAGCTATATTATATGATTAT 65246 28 100.0 32 ............................ CTTACTATTCCTCATTACTTTGGCGATAATTT 65186 28 100.0 32 ............................ ATTATTCAGTGTTTCGCTAATGCGGTAAGTTG 65126 28 100.0 32 ............................ TTGGATATACCAATATTGCTCAAAAATATCGC 65066 28 100.0 32 ............................ ATTTGGGGTATTGGTGTAACTATTTGTAAATA 65006 28 100.0 32 ............................ GTTCAGCTACAGCTTTAGCCGTTGGTTGTTCG 64946 28 100.0 32 ............................ AAAAGGCGGGTTACCTGTTGGGGGATGATGCC 64886 28 100.0 33 ............................ TAGACCTTTAATTGCACGTTCAGCGTCAGCTTT 64825 28 100.0 32 ............................ ACCAGACCCAACCAGCCAATCTGTTGAGTAGC 64765 28 100.0 32 ............................ TCTTTATCATCAGCGTCTGGCATATTGATTTG 64705 28 100.0 32 ............................ TTCATCTGGCACCATGGCAGGTTTGTATTTTA 64645 28 100.0 32 ............................ TATCCTTGCTTTCTCTTATCTTACTAAAAAGG 64585 28 100.0 32 ............................ GCTTTAGAAATCTCTCCAGGTTTTCTAAATCA 64525 28 100.0 32 ............................ TTTACCAATCTTTTCTAGCACATTTAATAGCT 64465 28 100.0 32 ............................ AACAAGGGGAATATGATAAACGCTTAGCGGAT 64405 28 100.0 33 ............................ ATAGTCATCCGCTAGACCCTAAGCAATAGCACT 64344 28 100.0 32 ............................ TTGATCTGTGGGGCAATGCCTATGTGTACATC 64284 28 100.0 32 ............................ ATTAAATTTCATAATGAGCCTCATCTGGTCAT 64224 28 100.0 32 ............................ GTACGACGCATAAGAAGATTTAAAAGTTCTAT 64164 28 100.0 32 ............................ TCCTGCTTGTGCCAAGCCTATTACTAACGTAG 64104 28 100.0 33 ............................ TGTTTGTGATCGTGATTGTAAATGCTGCATGAA 64043 28 100.0 32 ............................ CTGCAAGCAGGCAGACGGGTGTACATCAGCTT 63983 28 100.0 32 ............................ AGGGTCAGCGTCATCTGCCGCACTGACAAGCA 63923 28 100.0 32 ............................ TCTTTAAAGACTGCCCCTTTTTCACTTAACAG 63863 28 100.0 32 ............................ TTTACCAGCTTTTTCTAAAGCTACTGTTAATT 63803 28 100.0 32 ............................ TTTGCTACCAATGTGAACTGATATTCTATTAA 63743 28 100.0 32 ............................ GATCTACACTATCGTTAACTTCGTTTTCTACT 63683 28 100.0 32 ............................ GTTTAAGCTGATATACACCCGTCTGCCTGCTT 63623 28 100.0 33 ............................ AGAATAAATCTTCTTTTGACATTGCACCATCAA 63562 28 100.0 33 ............................ ATTCATTTTCTTGTAAATCTAAAAATATTTTGA 63501 28 100.0 33 ............................ GTTACAGCAAGTTTGACAACATCAAACGGCTCA 63440 28 100.0 32 ............................ TACTTGTCTATCCAAAATCAGTTTATACGCTG 63380 28 100.0 33 ............................ CCAAGACCCCGCTATGCCGCCTCAGCAGTTTTT 63319 28 100.0 32 ............................ AGCGTCAAACGATACTGTATTGCTTGGTAATT 63259 28 100.0 32 ............................ TAGAAATCTTTCTAGTCTAGAAAGTTTAGTTC 63199 28 100.0 31 ............................ AAAATCATCATGAATGTCTTGCCATTTTAAA 63140 28 100.0 32 ............................ GAGCGTATAACGCCAAGTGCCGAACAAATACA 63080 28 100.0 31 ............................ AATTTGGGGTTTTTTATTTGATACTATCTAA 63021 28 100.0 31 ............................ TCTGCTACTTTTTTCATTTCATTGTCAAGAG 62962 28 100.0 32 ............................ AATTAAACGTTTAGCTTCATGGATAGCACCTT 62902 28 100.0 32 ............................ ATAGATTTTGGTAGCCATATCAATGTAAACAT 62842 28 100.0 32 ............................ TAAACTCTACTACTCTGCTATCGTGATAATAG 62782 28 100.0 32 ............................ ACTTTCAAGCCTGCACAGAAAAGTGATAATCC 62722 28 100.0 32 ............................ TTTAGTGTTATGCTCATTTAATTCCTCAAAAA 62662 28 100.0 33 ............................ GTCATACTCCCTTCTTTCCAACCAAGTATTGTC 62601 28 100.0 32 ............................ CATAACAACGGATAAAATAATCTTTGTTGTTT 62541 28 100.0 32 ............................ ATAGTCTCATATGATATTTCTTGTTTTAGTTC 62481 28 100.0 32 ............................ CATAAAGTACCTGCTGAATTAGTGGGATAATT 62421 28 100.0 33 ............................ TTCATTAAGTTATCTGGAATGTAGATGTTTTTC 62360 28 100.0 34 ............................ TAGCGTTAACGCCTTTGATCACGTTGTCAATACC 62298 28 100.0 33 ............................ AATCTGTATAACCATACGAAGCTTGATTTTGCA 62237 28 100.0 32 ............................ TCAATCATAGCTTTATCCATATCATGCTTACG 62177 28 100.0 32 ............................ AACATCCGCAAGGATTGGGCGGATTGCACAAA 62117 28 100.0 32 ............................ TGCTTGTAGATAACGCTTGTTATAACGCACCA 62057 28 100.0 32 ............................ AATTACGATAAGAGAAACATTGCTACTGCTTC 61997 28 100.0 34 ............................ CGCCAATCTGGCGAGGGCTTAAGTCATTCTCGAT 61935 28 100.0 32 ............................ AATGACTTTCCAAAACTTGCCATCTCTTTTGA 61875 28 100.0 32 ............................ TTTTCATTTCATTGTCAAGAGTTTCTTCAACC 61815 28 100.0 32 ............................ TTGATCCCTAGAGATTTTGTGCATCTCCATTA 61755 28 100.0 32 ............................ TGCGTTTTTGCCCGTTTTGGACTTTTGTCCTG 61695 28 100.0 32 ............................ TAAAAAGAATGTAAAAAGCTATTGTTACAATA 61635 28 100.0 32 ............................ ATTAAACAGCGACTTTCAAAAACCCACAGTAG 61575 28 100.0 33 ............................ AACATAACTAGTCTCCTTAAATTTCAATTAGTA 61514 28 100.0 33 ............................ AGTAGTAAATAGACTGATAGCATCAGCATTAAT 61453 28 100.0 32 ............................ CCGAAAAGATTAGGGAAATAGCTTCCCACTTT 61393 28 100.0 31 ............................ AAGACACGCACATGACAGGCGTATCACAAGG 61334 28 96.4 32 ..........A................. AAGGATTTAACTTTATACTTGTTACTGGTATT 61274 28 100.0 32 ............................ AGTAGGTACAATCTTAGCAACTGACGCAGTAG 61214 28 100.0 31 ............................ AACTGTGCGTCAGTCAAATCATCCGCATTAA 61155 28 100.0 33 ............................ CTTGTTACATCTGATACTAAAACATCTTGAAAA 61094 28 100.0 31 ............................ ATAGGCAAGCTATCCGCATTGCCCTTTAAGC 61035 28 100.0 35 ............................ ATTAACACCGTCCGCCAGCTTGGCGTTGGTGGCTT 60972 28 100.0 32 ............................ GTCTGATTTTGATACATTGCTTTTGAACTTTT 60912 28 100.0 32 ............................ ACATGCTTCTACTGCATTATCTGCCCATACAG 60852 28 100.0 32 ............................ ATTTCGTCTTTATCTTCGCTATCTGGCATATT 60792 28 100.0 32 ............................ GTAATGACTTCCCCAGTCTTGATATCAAACGG 60732 28 100.0 32 ............................ ATGATTTTTTGGCGGTTAATGTACGAGTTGGG 60672 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ =================================== ================== 81 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CCAACAAGGTCTAAGCTATGAGTGGG # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCATCGAACAAACCACCATGGAAGAGATTACGGCTGAGGCGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGTATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATTACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGCCGGTGATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //