Array 1 161380-160801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOX01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161379 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161318 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161257 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161196 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161135 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161074 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161013 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160952 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160891 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160830 29 93.1 0 A...........T................ | A [160803] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGGATAAACCGCCATGTTTGATTGTGCGGATTGACCAAAAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163422-161685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOX01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163421 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163360 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163299 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163238 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163177 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163116 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 163055 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162994 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162933 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162872 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162811 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162750 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162689 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162628 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162567 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162506 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162445 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162384 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162323 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162262 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162201 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162140 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162079 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162018 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161957 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161896 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161835 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161774 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161713 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGTGTCCAGCGGACATCCTCAGCCGGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 182033-179929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOX01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182032 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181971 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181910 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181849 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181788 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181727 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181666 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181605 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181544 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181483 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181422 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181361 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181300 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181239 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181178 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181117 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181056 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180995 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180934 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180873 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180812 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180751 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180689 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180628 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180567 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180506 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180445 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180383 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180322 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180261 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180200 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180139 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180078 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180017 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179956 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //