Array 1 52696-53521 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JZQJ01000124.1 Escherichia coli strain HT2012126 scaffold124, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
     52696	    29	  75.9	    34	......................NNNNNNN	NNNTGTACCTGCGCAAAAAATAAGCGGCGGCAAA	
     52759	    29	 100.0	    32	.............................	GAATGGCATTCGCTGTTGGAATTATGGGGTAT  	
     52820	    29	 100.0	    32	.............................	GAGTATTTCCGTGCACCGTGGGAGGCGTTTTG  	
     52881	    29	 100.0	    32	.............................	CGCGGGATACGCCGGTTATATCACTGGTAGTG  	
     52942	    29	 100.0	    32	.............................	GAACTTGCTTACCTTTGCTGTGCTCGTCAGAA  	
     53003	    29	 100.0	    32	.............................	TAGTTGTGCTGATTTTTGATGGATGGTTATAA  	
     53064	    29	 100.0	    32	.............................	TCCGGCGAGCTGGTCACCTGGCTGAATAAATT  	
     53125	    29	  75.9	    33	......................NNNNNNN	NNNGAAAATACACCTAAATCAGCAGTTATCGCT 	
     53187	    29	 100.0	    32	.............................	CGTGTTTCCTGGAAGGACAGCACCATCTGAAG  	
     53248	    29	 100.0	    32	.............................	GCTATCGGGTGTGGATACCGCTTTCGAGGCGT  	
     53309	    29	  75.9	    33	......................NNNNNNN	NNNCGATTTCAACGCGGCGACGGTGGACTTAAT 	
     53371	    29	 100.0	    32	.............................	GGTCAAAATTAGCAAAACTTGATTCAAATAAC  	
     53432	    29	 100.0	    32	.............................	CCAGTAGGCGATTTGCGGGGCGTTCATGTTTT  	
     53493	    29	  75.9	     0	......................NNNNNNN	|                                 	
==========	======	======	======	=============================	==================================	==================
        14	    29	  93.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                  	       

# Left flank :   GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCACCGGGGGCACGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank :  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGGTGGCTGGGGCCGCCCGGTTGTTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCGGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTGCCAAGATTCCAGTTAGTCGCTTCCACCGAA

# Questionable array : NO	 Score: 5.91
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,-0.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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