Array 1 483686-485788 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJU01000007.1 Salmonella sp. zj-h16 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 483686 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 483747 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 483808 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 483869 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 483931 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 483992 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 484053 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 484114 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 484175 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 484236 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 484297 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 484358 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 484419 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 484480 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 484541 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 484602 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 484663 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 484724 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 484785 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 484846 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 484907 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 484968 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 485029 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 485090 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 485151 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 485212 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 485273 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 485334 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 485395 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 485456 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 485517 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 485578 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 485639 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 485700 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 485761 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503421-505402 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJU01000007.1 Salmonella sp. zj-h16 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503421 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 503482 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 503543 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 503604 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 503665 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 503726 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 503787 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 503848 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 503909 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 503970 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 504031 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 504092 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 504153 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 504214 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 504275 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 504336 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 504397 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 504458 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 504519 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 504580 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 504641 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 504702 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 504763 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 504824 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 504885 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 504946 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 505007 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 505068 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 505129 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 505190 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 505251 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 505312 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 505373 29 100.0 0 ............................. | A [505400] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //