Array 1 459878-458193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBG010000012.1 Streptococcus uberis strain GCPRG117 Contig_12_226.549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 459877 36 100.0 30 .................................... TTGAAAGTTTTGGGAATAAGTACTTATTAA 459811 36 100.0 30 .................................... TGATGAAATAGAAAGGATGTTAAATGACTA 459745 36 100.0 30 .................................... AACGTCAGCTTGAAGATCCTCAACAATTTT 459679 36 100.0 30 .................................... TCTAACATATTTTGTAATAACTCAGGGTCT 459613 36 100.0 30 .................................... CAATTTCCGCACAAAGTTTTGCCCCATTTT 459547 36 100.0 30 .................................... TACTAATACACTATATAGACTAAGAGATAA 459481 36 100.0 30 .................................... AGTTCCTTTCTACATATAAAAAAGCAAGGC 459415 36 100.0 30 .................................... TAGATGCAGAGCTAGACGCACGCAATGCAA 459349 36 100.0 30 .................................... AACTAGTATCAGAAGATAACCCCAAAGGCA 459283 36 100.0 30 .................................... CTGGAACTGAATTGAGAAAATACACTGCTG 459217 36 100.0 30 .................................... CTTTCCTTTACGAATTTTTGTCTTAACTTC 459151 36 100.0 30 .................................... CTCCACTGATGAATTTAGCGGTTGAATCGA 459085 36 100.0 30 .................................... CAAAGCTTTTAGGGTCTATCAGTCCACTAA 459019 36 100.0 30 .................................... CTGCAATTGCAGAATTTGAACGAGAGCAAA 458953 36 100.0 30 .................................... CGTTTTCTTCTTTATCTGATACACTCATTG 458887 36 100.0 30 .................................... ATATAACGAATCAGCTAAATTTAACAGGTA 458821 36 100.0 30 .................................... AGAAGCAAAATGAAGAACTTAGAGAAGAAA 458755 36 100.0 29 .................................... ATAGCATGACAGATAATGAAGAAGTTGTT 458690 36 100.0 30 .................................... AACAGAAAATTTTAAACAAGATGTAACGCT 458624 36 100.0 30 .................................... CAGGTGTAAGAATATGGAATTATGAAGATA 458558 36 100.0 30 .................................... CGCTTTTAAGGGTAGCTAGGTAACCATACA 458492 36 100.0 30 .................................... TATAAGGCTTGAAATAGCTATCCCAATCAT 458426 36 100.0 30 .................................... CAGGTCATACTGGTGTTGTAACTGGTATAG 458360 36 100.0 30 .................................... TCATTTTTATTCTCCGATTTCTAATTCTCC 458294 36 100.0 30 .................................... TCATCTATATTCCTCTACTTGATTCACTAA 458228 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGATATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGCTTGTCTATAAGAGATATGGTAACTATCAAAATATTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAAATAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTGATTTGAG # Right flank : GGCAAATAATTCCATATAACACAAAGAAAACAGACACTTTCTAGAGTGTCTGTTTTTGCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAAATAGCCTTAAAAATGTATGTCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTAATGTTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGCCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //