Array 1 2836-1812 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWK01000026.1 Anaerotruncus colihominis strain 28 Scaffold23_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2835 32 100.0 33 ................................ TTTTAATGATAGGGCGTTTGATATTTTCAACTC 2770 32 100.0 33 ................................ GCAAAAGCGAAATTGTAAAGATAAAAGAGAGAT 2705 32 100.0 33 ................................ AATCTACGAGTTTACCGTATCTTGAAATGCTTG 2640 32 100.0 34 ................................ TATGCTTATTCATCTCTATATGAAGCAACACAAA 2574 32 100.0 33 ................................ TTCTGCGGAAAGCCTTAGCGGTCACCGTAATCG 2509 32 100.0 35 ................................ CGTTCTAAGGAGGTTGGATATGGAAATTGTATGTG 2442 32 100.0 35 ................................ CCCTTACACCGCTTACCCAACTGGTAATGTGTTTG 2375 32 100.0 34 ................................ TTCGCTTGCATTTATTATAGCCAGCATACCAGAC 2309 32 100.0 35 ................................ TTGCTAAAGACAAAGCTTGGAAAAGTCGCATTAAC 2242 32 100.0 34 ................................ TTTTCAACATAGGCTTGTCTATATCGACACCAAA 2176 32 100.0 33 ................................ CGCAATTCTTCCAATCCAAATTCGCAGGGTCAG 2111 32 100.0 34 ................................ ATCTGGTAATGCGTGAAGTTTTTTTACGTAATCT 2045 32 90.6 35 ............AT.................C TGGCGTTGGAGCAGAAGCATAATTGGAGTGTATTT 1978 32 93.8 35 .............T.................C GTGGTTTGATTTTGCTGATGGTACGAATATGGGAA 1911 32 96.9 34 .............T.................. CGTGGACCGGGACAATTACCGGACGGTCTATGCA 1845 32 84.4 0 T...T...C.....G..T.............. | C,T [1832,1839] ========== ====== ====== ====== ================================ =================================== ================== 16 32 97.9 34 GTCGCGCCTCTTGCAGGCGCGTGGATTGAAAT # Left flank : GCTTTAATTGATAGTGATGCACTGATTGATGCGATCGAATCGGAAAAGGTTGGATTTGCGTGCCTAGATGTAGTCGAGCACGAAAGTGGTCTGTACTATTTTGACCGCATGGGTGAACCTCTGGGAAATCCGCGATTAGCAATCTTAAGGTCTTATGCCAATGTTATCGTTACATCCCATATGGCGTTTTACACGGATGAAGCAGTGGCGAATATGGCAGAGAACTCTATTTTAGGAGCAAAAAAATACTTTACAGGTGAAGAAAATCCTTTTGAGGTATAATTGCGACAGATAAAATACACTTGTCCTAAAAATATTTTGGAAAAGATGGAATTTTGTTGGTGCGAAAACGAAGTGAACATGACTTTCTGGGATGTTTCGCACCTGTAATTCAATGAAAAGAGGTGATCTTAAGAGGCTTTTGACAGTTTAGTAGTATGTAGAAATAGAAATAAAACAAAAGATTGATAAAAATTATAGAAATCTTTTACAATTTTGCA # Right flank : CTTGTGACAAGGACAGAAACTTCTATAAATCCTGGGAAAAACGGAAATAATTTTGAAAATCCCCTATCACTACAGCAAACCTTACGGCAATCTTTTCCGGCAATTAGCATATCCGCTGCACTTTTCTCATATATTACACCAAATGAGAGAGGTGTTTTTATGATAAGGAAGAATCGAAAAAGAGCGTTATGCCTACTTTGTGCCCTTTGCCTTTGCGGAACTGGTGGAATTTTAGGTGTGAAATACTATTCTAACCCGCAGGAGCCTGTAGTGCTGGAAACAGTGTCTGATAGTTTGACGTCTGAGGGTGCCCCAACCGAAGAGCAAAAGAAAGCTAATTTGAATTTAGATGTAAAGGCAGCAGTACTCATTGATGCGGATACGGGCAAAGTCCTTTATCAGCAGGATGCTCACAAAGAGCTGCCACCAGCGTCAGTAACCAAAGTTATGACCATGCTTCTTGCAATGGAAGCAGTTGAAGATGGGAAAGTTAAATTGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCTTGCAGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA // Array 2 4589-4289 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWK01000026.1 Anaerotruncus colihominis strain 28 Scaffold23_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 4588 33 100.0 34 ................................. AGTAACAAGGTTGTGGAATATGAATGTAACGGTC 4521 33 100.0 34 ................................. TTTTCCATGCGGAAAATGTTCTTTTCAGCCTTGT 4454 33 100.0 34 ................................. TATTCAGGACGACATGAATTCTGAAAAGAAAAAA 4387 33 100.0 33 ................................. GTTGTTTTACACCCATGCCGCAGACTATAGCCT 4321 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 100.0 34 GTCGCACCCCGTGAGGGGTGCGTGGATTGAAAT # Left flank : ACCTGGAAGGCTACCCGCCATTTTTATGGAAGTAGGAGGTTTCAGATGCTAGTATTAATTACATACGATGTGTCAACGCAGGACAAAGCTGGAAAGACCAGGCTTCGAAAGGTCGCAAGGGAATGTGTCAATTATGGTCAGCGTGTACAAAATTCGGTATTTGAATGTATAGTGGACAGTTCGCAAATGCTGCTCTTAAAGGATAAACTTTTGTCTTTGATTGACGAAAAACAAGATAGTCTCAGGTTTTACTATTTGGGAAATAATTATCAAACAAAAGTAGAGCATTTCGGAGCCAAAGAAAGTTATGAAGCTGAAGGCGTTTTGATGGTTTAAGAAAGGTGCGAAAGGCAAGTGGACATAAAATCCTTGGGGCTTTCGCACCAGAATTATAGACAAAATAGTTACTTTTCTGGAAGTATATGTATTTATACTTTTGGAAATTATAAAGAATTTACAAATAAATGGTGATTCTATTGGGAAATTGGCGTTTATTTGCA # Right flank : GCGCCGGGGTTATCGTTACCGTAACCTTCTATGATCACTGGTACCAACTTGTGCCTATTTATAGTCACGAGTTGGTGGCTGTGAAAATACTAAAATATATAGAATTTCAGTTAGTTTCAATTTATATTCCTCTATATAAAATGGATGAGAGATTATTAATTTTTAATAATAGATTTTGACAATCATTCTTAAATGCTATGCATTCTTTTTTATTTGTGTTATGATAAATGCAAGTAAATGCGAGAGGTAGCGACATGAAATTATTTGTATATAGTATGAGAGACTTTGACGAAAAGCCTTTCTTTGACAAATTTTGTGAAAAGTATGATGTGGAGTATGGTTACACTGCAGAAGCGCCTTGCTTAGCAAATGCAGAGTTAGCAGCGGGTTATGATGCCGTGGATATTATTACAACTGTTATTGACAGAGAGTTAATTGATAAATTTTATCAGCTTGGAATAAAATGTATTTCGACTAGAACGATTGGATATGACCATATT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGAGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 330155-329194 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWK01000001.1 Anaerotruncus colihominis strain 28 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 330154 36 100.0 30 .................................... TATCATCTATTGGTATGTTGAGAAAATCGA 330088 36 100.0 30 .................................... AGTACCTATGAATAGCGGCGAGTATGACTG 330022 36 100.0 30 .................................... AGCGTATATAATAAGCTTGCAATTGCAGTT 329956 36 100.0 30 .................................... CCAACTGAACCAATTGACACCATGATTTTT 329890 36 100.0 30 .................................... TGTCTAAAGCAGGTAGAGCGGACACTATAA 329824 36 100.0 30 .................................... CAGGGCGGTCAGACTATTACAACCCTCGAA 329758 36 100.0 30 .................................... TGATATCATTTTAAACCTGACAACGACGCT 329692 36 100.0 30 .................................... AATTAGTAGTAAAATCAAATGATTTTATCA 329626 36 100.0 30 .................................... TGATTTTTATTATGTCGAATCAATAAACCT 329560 36 100.0 30 .................................... TTCGCTTCTGTAAAAGCTCCTGCGCTTGCT 329494 36 100.0 30 .................................... TCACCCAAATCAGAAGCGCAATCAAGATTT 329428 36 100.0 30 .................................... GTAGAAAATGGAAGATAAAACAGACAAAGA 329362 36 100.0 30 .................................... ATGAGATTGAAGAGAGCACTGTAAGCGATT 329296 36 100.0 30 .................................... TTATAAACGCCATCACGTTTTTTTACGGCG 329230 36 77.8 0 ..................C.T.C.A.TA.T..T... | G [329197] ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.5 30 GTTTGAGAGTAGTGTAATTTCATATGGTAGTCAAAC # Left flank : CGAAAAAAGAAATTTCAAAGAAGCTCTTTGCCGAGCTTGAGGCGGCTGCGCAGGAACAGGAGTTGGTTTCTGAACTTAGTGAGATTTACGGAAGTCTCTTTGGGGTGCTGGAGAAACTGCGTTTTGCCGCGGATTATGAAATCGAGTATAATTCGGATTTTGCAGTCTCGGATATTCTAAAAAACTGCGGCGTACATTTGACCGATCCGGCAGGATTATATGTTGAAAAACTGATAGATTATATGATTGTCATGCACAAACTGCTAAAGAAGGAACTCTTTATCATTGCAAATTGCAGTGGATATTTAGATGAAGAGGATTATGAACATATAGAAAAAGCGGTAGCACATTATGATTTGTGCATTGTATTTGTAGAAAACAGACAGTTGCGTTTGCCAAAAATAAAAAAAGAGTATATAATTGATAAAGATTTATGTGAAATACACTAGTGTTTTACCATATGGATACGAGGGCGTAGTGGCCTGTGCTTGAGAATTGAG # Right flank : AACTTAAAAAGCAGGTGAGTAGCGGCATCAAATTGATGCCGTTATGTATTTACATAAATGGTAAAGCACCGCAGGTCTTCACACAACCTGAATTTTTGAGATAATAGCTCTAGTTGAAAAACTTTGTCAACTTTGCGCACTTTCTAAACTCGGAGGGGTATCTATCAACGAAATTCAAACTGTAACGAAAAATATTAAACTTCAACAGTGACCCAAGTATCATCCAGGATTGTAAAGCCAGCGGTCAGCAGGTGAATAACTACTGTGCAGACTATGCAATCTCACGTAATGCATACTGCTACTTTATGTGCTTACGCTATCTGCTGTAATTTTTGCTGTTGAATTTTACAGCAAAATAGTGTATGATGAAAGCGATGAAAGGAGCTGATTTATATGCCAAATATTAAACCGATTTCCGACTTGCGAAACTACAGTGAAGTACTGCGAGACGTTTCGGTTGGCGCGCCTGTTTTTCTTACCAAAAATGGCAGAGGCCGCTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTTCATATGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //