Array 1 85372-86821 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFF01000016.1 Photorhabdus laumondii subsp. laumondii strain M-IL9 M_IL9_6_scf0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85372 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 85432 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 85492 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 85552 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 85612 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 85672 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 85732 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 85792 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 85852 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 85912 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 85972 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 86032 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 86092 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 86152 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 86212 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 86272 28 100.0 14 ............................ CATACCAGAACTAG Deletion [86314] 86314 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 86374 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 86434 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 86494 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 86554 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 86614 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 86674 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 86734 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 86794 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32163-30514 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFF01000001.1 Photorhabdus laumondii subsp. laumondii strain M-IL9 M_IL9_6_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32162 28 100.0 32 ............................ GTCTGTTACTTATGAACAATCAAAATATCTTT 32102 28 100.0 32 ............................ GATGATAAGCTATATCTTGTAGCGTTTAATGC 32042 28 100.0 32 ............................ TGCTTGGGATACGACGTCTTTTAAAGTCGATT 31982 28 100.0 32 ............................ TTTACCGTTCAGATAAGTGACGGCTGGATTGA 31922 28 100.0 32 ............................ AGCATTAAAGCCATCATATTCCAGTTCGAAAC 31862 28 100.0 32 ............................ TGTTGCTATCCATGATAACATTAAGATTAACA 31802 28 100.0 32 ............................ TGAATCCGAATTAACAGATTCCGACGCTATTG 31742 28 100.0 32 ............................ ACCTACATCCATCGGTATCCGGAGGGGTAATC 31682 28 100.0 32 ............................ CATGCCGAGTTGTGGATTGATGATAGTCAAAT 31622 28 100.0 33 ............................ AGTTTGAAACCATCACTACGAGAATTATTAAGT 31561 28 100.0 32 ............................ AGCGGCTACAATGTCTATGCTATTCAGTGGGT 31501 28 100.0 32 ............................ TGGGCTGAATTTATTAAACCTGACGCGCCGGA 31441 28 100.0 32 ............................ GATAAGTGACCGAAAACAGGCTTTACATCAGT 31381 28 100.0 32 ............................ TTGTTGCATCGTATGGTGATGAACAAGTTTTA 31321 28 100.0 32 ............................ GGTGAAGAAGATAACAAGTCGTATTACGAAAC 31261 28 100.0 32 ............................ AGCATGTAAGCGAAAAGGAAAATACCGATGTG 31201 28 100.0 32 ............................ TTCTCACCTTTTCGCCGCACATAGCGGCCACC 31141 28 100.0 32 ............................ TTTTCGCTTACATGCTGGACACTCTCCTGCAT 31081 28 100.0 32 ............................ TTATGGACAGGCATTATTAGCTTTATTGCAAA 31021 28 100.0 32 ............................ TGATAGAGCTTATTCGACAGCTATAGCAAATA 30961 28 100.0 32 ............................ TGACCTCTACGAAAACCTTTCAAGGCATTTCT 30901 28 100.0 32 ............................ TAACGGAGGACTATTACCCCACAGGGGCATAG 30841 28 100.0 32 ............................ TACGGCGAACGTATACAGATTGTGCGGCCACC 30781 28 100.0 32 ............................ ATGATTAATCCATCGACTGCGGGTAAATCAAA 30721 28 100.0 32 ............................ ACTACATGCTTCTTACTGACGTATATAGGTGC 30661 28 100.0 32 ............................ AAAATGCTGGGCTGCTTCTGACAGGGATAGAC 30601 28 100.0 32 ............................ ACTCCACATCCGGCGCTTGATTCACATCTACA 30541 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAACTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40807-40659 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFF01000001.1 Photorhabdus laumondii subsp. laumondii strain M-IL9 M_IL9_6_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40806 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 40746 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 40686 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : CGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCATG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 46023-44675 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFF01000001.1 Photorhabdus laumondii subsp. laumondii strain M-IL9 M_IL9_6_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46022 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 45962 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 45902 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 45842 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 45782 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 45722 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 45662 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 45602 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 45542 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 45482 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 45422 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 45362 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 45302 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 45242 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 45182 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 45122 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 45062 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 45002 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 44942 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 44882 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 44822 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 44762 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 44702 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3374-3642 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFF01000058.1 Photorhabdus laumondii subsp. laumondii strain M-IL9 M_IL9_6_scf0058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3374 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 3434 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 3495 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 3555 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 3615 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //