Array 1 163401-161314 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRK01000002.1 Salmonella enterica strain GSJ/2017-Sal.-014 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163400 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163339 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163278 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163217 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163156 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163095 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163034 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162972 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162911 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162850 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162789 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162728 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162667 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162606 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162545 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162484 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162423 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162362 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162301 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162240 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162179 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162118 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162057 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161995 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161892 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161831 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161770 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161709 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161648 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161587 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161526 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161465 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161404 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161343 29 96.6 0 A............................ | A [161316] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181025-179532 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRK01000002.1 Salmonella enterica strain GSJ/2017-Sal.-014 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181024 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180963 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180902 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180841 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180780 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180719 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180658 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180597 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180536 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180475 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180414 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180353 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180292 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180231 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180170 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180109 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180047 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179986 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179925 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179864 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179803 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179742 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179681 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179620 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179559 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //