Array 1 1033298-1034584 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024342.1 Pseudomonas sp. Eqa60 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1033298 28 100.0 32 ............................ ACCACCAGGCGCACCCCGGCGGCCGCGACTTC 1033358 28 100.0 32 ............................ ACCTCGGTACTGACCGACCTGGAAGGCAAGAC 1033418 28 100.0 32 ............................ ACAGCGCCAGGCGCAGCATCCCACGCGATGGT 1033478 28 100.0 32 ............................ AATGTAACGCAGCGCCTGATCAGGCCTGAAGA 1033538 28 100.0 32 ............................ ATCGAGAGCATCGATCTGGTCCTGCAGGCCGT 1033598 28 100.0 32 ............................ AGCGTCGGAGTCTGGTCGGTCTGGTCCGCTAT 1033658 28 100.0 32 ............................ TACGCCGATGCTGTCATAGATCAGGGCGGTAG 1033718 28 100.0 32 ............................ ACTGACTCCGTGCACGGCGTCATGGTTGTTCG 1033778 28 100.0 32 ............................ GCCGCCGTCCTCTCACCACGTTACACATCCGG 1033838 28 100.0 32 ............................ AACCTCGCGACGTTCAAGACCTTCACTTGCTC 1033898 28 100.0 32 ............................ AACGACCCGACCCAGAAACCAGGTCAGCAAAA 1033958 28 100.0 32 ............................ ACGATGTGGGGTTGATCGGGGTGATCGCTGGG 1034018 28 100.0 32 ............................ GAACCGGTCAGGATGTTTTCACCCAGCTGCAG 1034078 28 100.0 32 ............................ TACCAGCAGGGAACCGGGATGGCCTACGCCAA 1034138 28 100.0 32 ............................ AGGACCACGTCGCCGTCCTTGGGCGACTCGAT 1034198 28 100.0 32 ............................ TGTGTCAGAGCCTGTGCTGGTCACTGCTGTTG 1034258 28 100.0 32 ............................ TGCACACGTCAACCCAGAACCAGTACCGGTCC 1034318 28 100.0 32 ............................ CAGTCGCGACAGATCGGCTCCGTCATCGAGCA 1034378 28 100.0 32 ............................ AGGGGCGTGGGGATGCCCAGCCAGTCGTCGGA 1034438 28 100.0 32 ............................ AAGTACACCATCGCTTACAGCAAAAATGATGT 1034498 28 96.4 32 ..........A................. GCACATGGCTAAGCGCTGCGCCGATCAGGATG 1034558 27 85.7 0 ............AC........-.A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCCTGCGGGCACCGACTCGCCCTTCACCGTCCTCCCCGGCATCAGCGCCGAGGAAGCCTTGCTCCACGTTTCCATGCTGCTCAAAGCCGCCGAAGAGGTGTCCGACGAGATCACCGAGCAGGCCAGCGGCGTCGAGCGTGGCCTGATCTGGTCCCTGGTGCATTCGGTGGAAATGGCCCGTGGCGTGGTCGATGCCTTGCTTGATGGCAATCGTCGTTCTTCCAGCTGAACGGTTTGATTTCTATGGCGAGGGAGCCGCTCCCTCGCTCCACCTTGGTCACTGCGTCACCATCACTTTTCTCACTAGGGCCTCAACCAAATAGGTTCAAAGGCTATAGTCTGAACCCTGCCGATCGGATGCTTGGGACTGACCCTCTTCTTGGAGGAGGGATAAGCCCTATGTAAAATCAATCACTTACAGATGCTTCTAAAAAGAGGGTCTGGCAGGTTGTTTGGCTGATTGTTCTTTTAAGTCATGGGGTTACGAAGTAATTTGTCTA # Right flank : ATCTGGCCCACAAGCATTGAGTAGCAACCGGTGACCTCCAAACTTCGCCAGCAGGTTTGCCCGGCAGTTCTATTTGCACTGGAGCGAGGCAACGATCTGATTTTCCAAACTGGCATAGACGAACAACCCGACATTGCTTATAACCGCTACCGCTCAATGGACGATGCAGCAGGCGGCTCTCTCTCATGGAAGACATCAGCTCCGCAGATCTAAAAACGATTCTTCATTCCAAGCGCGCCAATATTTATTACCTGCAGCACTGTCGAGTACTGGTCAATGGTGGTCGGGTCGAGTATGTAACCGATGCCGGCAAGCAGTCGCTGTACTGGAATATCCCAATTGCCAATACCACGACCGTGCTACTGGGGACCGGTACATCAGTCACCCAGGCAGCCATGCGCGAATTGGCCAAGGCTGGCGTTCTGGTGGGGTTTTGCGGGGGCGGTGGCACGCCGTTGTTCAGCGCCAATGAGATCGATATCGAAGTCGCTTGGTTTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1043338-1043965 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024342.1 Pseudomonas sp. Eqa60 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1043338 28 100.0 32 ............................ ACCCTGGACCCTGGAATGAAGCGAATGCCTGA 1043398 28 100.0 32 ............................ AAACAGCGCAACGCTTATTGCCGACGATGAAA 1043458 28 92.9 32 ..........TC................ AATATGCAGGATAATGGCCTAGGCACCGATGC 1043518 28 100.0 32 ............................ AACCCGTAACGCGAGTTAACGAGCTTGTGATT 1043578 28 100.0 32 ............................ AGTCATTGAGATCAGGTTGCCCTGGCCTCCGC 1043638 28 100.0 32 ............................ CTATCCGCCAGGGCAGAGCCGAGCGCGCCGAC 1043698 28 100.0 32 ............................ TTGAAGTCGCCGGCGTCCATGCGCCAGACCAT 1043758 28 100.0 32 ............................ ACATAAACTGCGCGGACCAGGTGCCGAAGTGG 1043818 28 100.0 32 ............................ AGTAGGACATGCCTCGAAAGGTCGTGGCCAGG 1043878 28 100.0 32 ............................ AAGTCCTCGTGGTGCAGCGTGAACTGGTCGCG 1043938 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGCCTTGGACCAATTGTTGGCCATCAATTGGCTGACGGGCATGCGCGACCATGTGCAGATCGGCCAGCTATGCCCTGTTCCGGCATCGGTGCAGCATCGCCATGTCTGCCGGGTGCAGGTCGACAGCAATCCCGAACGCCTGCGGCGCCGCCTGATCAAGCGTCACGGGCTTTCTGAGGACGAGGCACGCCGGCGTGTTCCCGATACAGCCGCGAAAAGCTGTGACCTGCCTTTTGCTGTCATGCGCAGTCATACCAATCATCAAGTGTTCCACTTGTTCATCCGCCACGGCCCGCTTCTTGATCAACCACAAGCAGGAACATTCAACGCTTATGGCTTGAGTTCAAGCGCAACGGTGCCTTGGTTTTAACCCTTTTTTCTGGGTGGACTGAGCCCTCTTGTAAAATCAATGACTTACAAGGGGGATCAGAAAAAGGGTATGTGGAGTCTTTGGACGCCTTTTCTAAGCGCAATCAGAGGGTTATGGAAAAAATGCTCTA # Right flank : AACACGCGTGAGTATCATGCTTAATCCAGGTCGCAGCTCGCCACCGCTCTGTCACACCCCCTTCATCCCCACTGTCTAAGGTGTGCTTTTTGACCATTGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGCCGTCGTCGGATCATGCAAATCGCCGGGGCGGGGCTGTTGATGCCGAGCCTGGCGCCGGCGGTGATCGCTTCGGTCAAGGATCGGCCGCAGCTCACCGACGGGGTGCAGTCCGGGGATCTGCTGGGGGATAAGGCGATGATCTGGAGCCGCAGCGATCGTCCGGCGCGGATGGTGGTGGAGTGGGACACGCGAAGCATGTTCAGCAACCCCCGGCGCTCTGTTTCGCCCCTGGCCGATGCGCGGACCGACTTCACGGCGCGGGTGGAGTTGACCGGGCTGCCGGCCAATCAGGCGATCTTCTATCGGGTGACCTTCGAGGATGCCCAGTCCGGCGTGGCCAGCGAGCCCTGGTTCGGCCATTTGCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //