Array 1 70389-74852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLK01000005.1 Thermus tengchongensis YIM 77401 BS82DRAFT_scf7180000000011_quiver_dupTrim_10565.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 70389 30 100.0 36 .............................. CCCTTGAGCTTGGTGTGGGCCTTGGCCTGCCTCATG 70455 30 100.0 36 .............................. CCGGACGAGGCTAGAGCCGCCGCAAGGCGGTTTCGG 70521 30 100.0 38 .............................. GCCACCTGGGATGGCGTCACGATGCTCTCCTGGCGCTC 70589 30 100.0 36 .............................. CCGGTTAGGGGTCGGGTTTTGGGTTTGGGGTTTTGA 70655 30 100.0 37 .............................. AGCAAAATGCTCTACCAGGCGAAGGTGCCAGCCTCAA 70722 30 100.0 40 .............................. TTAGGAGCCACTAACGTCCGTGTGTACGCTAAGACCCCTG 70792 30 100.0 37 .............................. GCTACATGGTTTGAAAACGAGATTGAGCTCACGGGAA 70859 30 100.0 37 .............................. CGAAATAGCCATCACCTGGCCCGACCTGAGCCGGTGG 70926 30 100.0 39 .............................. CTAAATAGCGTGGCCATGGCTACTCGTAGGCTTCTAAAA 70995 30 100.0 37 .............................. AGCATGAGCTGGCGCCGGAGCTCTTCCAGGTTTCCAG 71062 30 100.0 38 .............................. TTGGAGACGAACACGGAGAACCCGGCCACCATGCCCGC 71130 30 100.0 42 .............................. CTCCTCATGGGCTACGTGCTGGTGGAGGAGGGACCATATGCA 71202 30 100.0 37 .............................. CTGGTTCGCCGTCTGGACATCGGCCAGCGCTACCCTG 71269 30 100.0 37 .............................. GCCGGTCCGTACGGCACTCCGATCGTGGCCGATGCCA 71336 30 100.0 36 .............................. CCGAGACCGCGGGTGCTTAGGCCCGCCTTCACCCTG 71402 30 100.0 39 .............................. CCGTGACCCGGTACCACCTCTCGGCCCTGGTGCCTGACG 71471 30 100.0 36 .............................. GGAGGCCATGCGCCGGGGGGCGTATGGCCCCCAATA 71537 30 100.0 37 .............................. CCCGCTCCGCCATCCTGGAGCTTCACCTGCCCGCCCT 71604 30 100.0 35 .............................. CCGAGCAGAGCGTGCAGGGCGGCACCGATGGCCTT 71669 30 100.0 36 .............................. CCATATCCCGTACCGGTGCCAGCGCTCGCGCCACAG 71735 30 100.0 38 .............................. GCCGCCGCGGGCGGCTGGACGCGGGTTTGAGGAGGCGC 71803 30 100.0 38 .............................. CTGTCGCCGGCGGGGTGGCCGTATTGGGGTAGCCAGCA 71871 30 100.0 37 .............................. CTCGTTCATCGTCCCTCCACAAAAATCCCCCGGTCAG 71938 30 100.0 37 .............................. CCACCACTCGCCGCGGCGCGCAAAATGGCCCCAATAT 72005 30 100.0 35 .............................. AGCTGGTCCTGCTGTATCTCCTGGACCGGGCGGAT 72070 30 100.0 37 .............................. CTACCACGCCCCTCCCGAGGAGTGGTGGCGGGCGGAG 72137 30 100.0 39 .............................. GCGGAAGCGGAGGTTCGCTTCCCTTAGGGCCTCACCCGA 72206 30 100.0 36 .............................. CGGCCTGACAGCACGGCCTCTAACTGGTCCTGCCTG 72272 30 100.0 36 .............................. ACGCGCACCTTCCAGACCTTGATGAGGCCGAAGAGG 72338 30 100.0 36 .............................. CTGGCTAATGTAGTCCTGGCTATGCGCAGAGTCCTG 72404 30 100.0 37 .............................. ACGAGTTCGCCACGGCGCTGGCGCGCCGGCAGTACAT 72471 30 100.0 37 .............................. GCCCCCTCGCGGGTGGCGGTGGCGATGAAGCGGCCGT 72538 30 100.0 36 .............................. AGGACCAGGCGGAGCTGAAGGGGGGTCAGGTCCTGG 72604 30 100.0 38 .............................. TCACGTTTCCGGTCAGGACGAGCTCGCTTGCGACCAAA 72672 30 100.0 37 .............................. CCGGGGTTCTCCAGGACCACGGGCAGGCTTCCCCCTT 72739 30 100.0 36 .............................. CGGGCTACGCCCGTATCTCGAGGCCCCCTGGCCCTG 72805 30 100.0 38 .............................. CCATACCCGGAAGTGTCATAGATGGTAGCCGCCCCCAA 72873 30 100.0 37 .............................. TGGGGCCTGGAGCTAAGGGAGAACAAGCGGGCCAGGA 72940 30 100.0 38 .............................. TTCTTCACCGGGACCTTGTCCCTACGGAATGCCCAGGA 73008 30 96.7 35 ............T................. GCCTCAAGCCACACCATGAGTCGCCGCCCCCACTC 73073 30 100.0 36 .............................. GCCTTCTCCGCCAGCTCACGGGACTGGCGCTCCCCG 73139 30 100.0 40 .............................. TTGTCCAAAACGCGGTAAGTTTCCGCCGATGCCCGGACGA 73209 30 100.0 40 .............................. TTGTTTTGGTCTACTATAGTTCTGCTCACCTCACTAACCA 73279 30 100.0 37 .............................. CCCGAGGGGGTCACGACACGCTTCACGCTGTGGAGAG 73346 30 100.0 35 .............................. CGGTACACCTCGGCGCCCCCGGCGTACCGCAGCAT 73411 30 100.0 35 .............................. ACCTGCGGGTACCTGCGCATGTTCGGTGCGGACCT 73476 30 100.0 40 .............................. CGGAGAACATCGGCCCCGTCCTGCAGAAGGTGGCCTCCTC 73546 30 100.0 36 .............................. AGCTCCTCTAACCTCACATCTACCTCCCAAATCGCT 73612 30 100.0 38 .............................. CGCCCCTGGGGGTCCTCGAGGAGGTCCTGGCGCATCGC 73680 30 100.0 38 .............................. TTGGACGGCGATATCCCGTTGGGTGGCAAGTTGGGCAA 73748 30 100.0 37 .............................. CCGTACATATCCTTCAAAACTGCCCTCGTCTCATCCC 73815 30 100.0 35 .............................. CCCGAGCGGCAGCGCCTCATGCGGGAGGCCCTCGA 73880 30 100.0 39 .............................. CCTGGAAACGGACATCTACGCCGCCGCCAGCCGCTACGT 73949 30 100.0 36 .............................. CGGATACCAATGGCGTGCGCTACCAGGCCCTGCCGG 74015 30 100.0 38 .............................. AAGTATAAGAGCCCCCCTTTCGGATATTCAGCGCTCAG 74083 30 100.0 37 .............................. TCCAGCGTCATGCCTGCAACCTCTTCACGCGCCTGAG 74150 30 100.0 39 .............................. CTCAGCCGCTCGGCCAGCGTGCGGCCAAGCATCCAGCTG 74219 30 100.0 38 .............................. GCATAACCCAGGGGCACAATGCCCACGCGCACGGGGAG 74287 30 100.0 35 .............................. CCCATTTCCTGCTCACGCGCGCAAACACGCACGCA 74352 30 100.0 37 .............................. AGGTTTCCGGGGCCTACGCCCTAAGCCTCCCCGTGCC 74419 30 100.0 39 .............................. GCGGGAGCCTCACAGATCTGCGACGGTTTGGTCCCCGGC 74488 30 100.0 36 .............................. TCGATATCCCTTGCCAGGGCGGCGGCCACATCGCCC 74554 30 100.0 35 .............................. CTTCAAGCACCTCATCCTGGCCGGGAAGCTGGCGG 74619 30 100.0 37 .............................. GAGAAGACGCCGCATCCGCCCCAGGCACCTTAGTCCT 74686 30 100.0 39 .............................. TCCCGCGCGTAGCGCCGGAGGGCGGCCAGGCGCTCCCAG 74755 30 100.0 38 .............................. CCCTGACCGCCGCCGGTGCGGTGGTCATCGACGGGGCC 74823 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 67 30 100.0 37 CTTTGAACCGTACCTATAAGGGTTTGAAAC # Left flank : ATGTTGCTGAGGTCTTTAAGCCGATACTGGTGGACCGGCTTATCTTTCGCCTCATCCGGAGGCAACAACTGAACCCAAGGCACTTTCTCCGGGAAGGAGAGGGAATTTTCCTCTCCGAGCACGGGCGTAGGCTCGTGGTGGAGGAGTGGGAGAAGAGCCTGCAAGCCACTTACCGCCACTTGCGCCTTAGGCGCTCTGTTTCTTACAGAACGAGTTTGCGCCTCGAGCTGTACAAGCTGGAAAAGCACCTGATGGGCGAGGAGCCCTATCTCCCTCACCGGTTAAGGTAGGCTTGGCTGGCAGTTTAAACAGCATTTTTTACCTGGCACAACAATGCGCCAACCCCTGATCGTGCAAAAACCCCGGGGGGTTGATGCAGTAGGGGGAGGTCTGCTATTTTGTGCATAGGCAGCCGCTCTTTGCTTGTTCGGCTGCAGGGGTTCTTGATAAGAAAGCTTAGAGTTCGATGAGAGAGAAAAGTCCTGGAGCCAACTCTGGCC # Right flank : CCCGCCATGCGCCGTTTGGCGGACCAAATCAACGCCAGCTTTGAACCGTACCTATAAGCTGAGCTCCCCCTCTAAGTTCGGACATCTCAAAACTTGCACTTATCCACCCCCCGCATACCCATGCGCCAGGGGACCACTTGAAAAGGGCCGCCGGGTTCCCTTCGGATGAAGGGTGCCATGCACCAGACGGCCCAAGCTCTACTCTGGACCCTCCTGGCCCCCCTGCCAACCCCCCACCTCCGGGAGTCCCTCAAAGCCCTGCTCTATCTCCTCCTCACCGGCCACGGCAAAGCCAGGCCCCAGCACAGCAAGACCAAGTCCCCCTCTTGCTTACGCAAATCTGTTTGCCCTACGGGCAAGGCAACCGCCCTTTCCCCCTTCTTCAACCGCTATCCCTGGCCCACCCGCACCCTCATCCGCCTGGCCCGTCAAGAAGCCCAAGAGGCCCCCCACCGGGCCAGGCCCAAGCGGGGGCCCAAGCCCTGCCCCTCGCCTTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACCGTACCTATAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 85150-84881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLK01000005.1 Thermus tengchongensis YIM 77401 BS82DRAFT_scf7180000000011_quiver_dupTrim_10565.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 85149 36 100.0 40 .................................... GACTCGCAATACGGGCCGTAGCCGCCTTCGGAGTAGTAGG 85073 36 100.0 42 .................................... ACTGACCAGTCAGTCATATAGGGCCCAGAAAGTAAGGGGCGG 84995 36 100.0 43 .................................... TCTATTGTTGATCCGTACCGGGTGCGGACGACCCGCACCCATA 84916 36 91.7 0 ..............................C..A.A | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 97.9 42 GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Left flank : CAGCCTTTCCCGTTTCATATCGGAAGGATACCGGCCTAGTACGCCCTAGCGCAAGCCCGTGGGGCGGAAGGGGTGGGAAGGGCCTCGAGGCGGCCATTCTGGGCCGGGAGGGGTACACGCCCTTTTACTTGCGCCAACGATAGCCGCTATAGAAGTGTGCTTTGTTGCGGGGCAAAGGCGCGTCCTAAACTTCAACCAAGCGAAGTATCCTTGAGCGCAGAGGTTTGGGGGGTAAAACCTAGACTCGGTACATTACAGCCCCTATTTGGTATAATGCACCTGTCCGGAACCCCGGACGGGCATCTTGAAAGCCAGCTTCCTCCGTCCTGCACGCGAGTATGCGTTTTCCCCTTTTCATCGCCCCTTTCTCCTGTGGCTTCCCAAGGGCGCAAACCCTCAAAAACCCCCGTTATTCGCCCCTCGCATATTCCAAGCTTCATGCTTCTCACAAATACCCCCCTCGGGAGCCCGCTCCAGGACGATGTGCAGAGGGGGTACCC # Right flank : AACCAGGCCCCTCGAGGCCCCTACAAGGGCAACACCAGGGGCCTCTCCCGCCCAAAGTGCAGGAGAAGCACCCCTTCCCCCGACTCCAAGAGGGCCAGCAGAGCCTCCCGCATGCCCAGGAGGAGCTCCCGGTGGGCCTTGGGAAGCCCCGCCAAGGCCCTGTCCAGCCCCTCCGGCCCCTCCTCCCGCCACACGGCCAGGGCCTTCAGGGGGCGCTTCCCCCTCCTGGCCTCCCCGTAGGCCAGGGCCTCCTCCAAAAGGGCCTGGCGGTCCGGTGGGGGCGGGCCCTGGGGGCTAGGGGAGAGCTTGATCTCCACCGCCCCCACCCGTTCCCCCCGCAGGCGGTAGGTGCCGGGGGGAAGGAGGCGGGCGGGGTTGCGCCCTGGGGGAAAGTGCACCAGGAGGGTGTGCCCCCGCACCTCCACCCGCACGTGGGTGGCCAGGGTGGGTACCTTGCGGGGCGCCTTCTCCTTGGCCGCAGGCCTGGCGGGAGGCTTCTC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 116072-116986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLK01000005.1 Thermus tengchongensis YIM 77401 BS82DRAFT_scf7180000000011_quiver_dupTrim_10565.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 116072 36 100.0 39 .................................... AAGACCTCGTCAAACCAGAAGTCCCCGCGGGGGAGGGGC 116147 36 100.0 36 .................................... CTGAAAGATCCCGCCTTCTAAAGAGAAAGTGTGGAA 116219 36 100.0 38 .................................... TTCAAGCCACTGGATGAACCGGGAGGCCACCTCCTTGG 116293 36 100.0 36 .................................... TCTCTCCCTCTCCCTGAGCGGCGTGGCCCAGCAGTA 116365 36 100.0 37 .................................... ACCGCCTGGCTGGACCCCGACCCCGAGCGCAGGCGGA 116438 36 100.0 37 .................................... GCTTTTTGCACTCCACCCGAGGAGCAGGGCGCGCAGG 116511 36 100.0 36 .................................... AAGGACGAGGACCTCCTTGGGCGGGAGCACCGCCAC 116583 36 100.0 39 .................................... GTGGCGTTGCAGTTCGTCGTGCCCCGGCCCCCTCTTCGG 116658 36 100.0 35 .................................... ATGATAGCTGTGGCCCTGGTGGAGTTTTGGGGGTA 116729 36 100.0 39 .................................... GTGGCGTTGCAGTTCGTCGTGCCCCGGCCCCCTCTTCGG 116804 36 100.0 35 .................................... ATGATAGCTGTGGCCCTGGTGGAGTTTTGGGGGTA 116875 36 100.0 38 .................................... GCCGTGTTCCGTGCCGGCCCCTGCCAGGATGCGCCCGC 116949 36 91.7 0 .............................G...GG. | CG [116978] ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 99.4 37 GTTGCAAGGCTCTTCGACCTCGTAGAGGATTGAAAT # Left flank : TGAAAGGCTTTGGAGAAAGGCGACAGTACTCCGTGTTTGAGGCCCGGCTCACCCGTGAGCAGTGGGCTCACTTGAAGGGTAAGCTTGAGCAAATCGTCGACAGAGAGGCAGATATTCTTGCAGTTTATTTTCTGCCCCCTGAAGCCGTAGAACGAACCTGGCGAATCGGTCACCAAGGGCTCAAGTCCTTGGAGGAACCTGACTTTGTCTGATTGCGGTTTTTGTTCTGGAGGTGCCCTCAGAGAAAACGCCCCCTGGCACCGCGAGCACGAAGGCCACTTTTCCGAATCCCTGTAGCGATAGTGAGCGGATTAGCGTTTCTCCACGGCCCCTAGCCCTTTCGAACTTGCTTGTACACTGGCCGTGGCGTGCGCTAACCTTGCCGAAGGCAAAACAAGCCTCGATAGGCCTTGCCTAGACTCCTGACCTTGCACCAAACAAGCTTGCATGCGAAAATAGAGATGCGGGTGCCGTTTACCAAGGCTACTGCCGCCCATGCA # Right flank : TGGTCCCGGTGGGGGAGTTTTTGGAGCGCTATCCGCCGGGGAGGGCCCGGTACTACCGACGGTTTGGGCTGTACGCCAAGCGGGTGCGGGAGGAGAGGCCGGGGCTGATGTGGCGGCATGCGCAGCGGGAGGCGGGGAGGAGGTTGAGAGAGGCCTTGTTGACCGGGCCTCAAGCCACCTCCCCCCCTAGGAGGCTCGTTCGGAGGGGAGGTGGGACGTAGGGAGAAAAGTTTTGTCGGAGAAGAGGGCTAGGCGTTGATCCAGGGCCCGATGGGGGTGTCGTGGGTGCACTCCTGGCCCTCGGTCATGGCCAGGAGGGAGGTGTGGATGGGGCTTTGGGCTATAGCCTCCAGGGCGCGCCGGACTGGGCGGGGCATCCCCTTCTCGGACCTCCTTCGTGACCGGGAGGCTCATCCTATTATCTGCCTATCTATCTGCCTATCTCCTCAGTGCGTAAGTCCTGTTAGGGCTGTGAAGCTTTGGACTTTAATCCGAGGAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGCTCTTCGACCTCGTAGAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 165591-166291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLK01000005.1 Thermus tengchongensis YIM 77401 BS82DRAFT_scf7180000000011_quiver_dupTrim_10565.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 165591 37 100.0 35 ..................................... TCAACCAGGAGGAAGTGCCCTACCTGCCCCTCACA 165663 37 100.0 36 ..................................... AAGAACCCCCAGGGCCTAGGGCCCTGACCCAAGCCT 165736 37 100.0 39 ..................................... CTCAGCGCCGCCGCCACAGGGGGCACCCCGGGCTCTCCT 165812 37 100.0 37 ..................................... CTGCGGGAACTCTTCGCGGAGCTGGCCGCCCGCGCCC 165886 37 100.0 35 ..................................... CATCGAGGTGGTCCGCACCGCCATGGGAGGGCCGC 165958 37 100.0 37 ..................................... TACGTGGTGGCGGCCATCGACGAGCGGGGCGTGGAGT 166032 37 100.0 37 ..................................... CCATACCAGGTGGGCCGCATCCTTCTTCCGCATAAGC 166106 37 100.0 39 ..................................... TGCGGGTCCTTGTGCTCCATGATGTAGTCCGCCACGGAC 166182 37 97.3 36 ............................G........ TCATGGAACGGCCCTCGCCGTATCCATCCCCGAAGG 166255 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 99.7 37 GTTGCATCCAAGCTGAAAAGCTTGGCTACGTTGCAGG # Left flank : AGGACAAGGTCCGCATCCACCCCGTGGCCACCCTCCTGGCCTGGGAGGCCCTGCCCCTCTTCCCCCTGCACCCTGGCCCCGGCGGGGTGTGGGCCGCGGGGATCCTGGAGCCCGGGGGGCGCCCCAGCCTCCTCCTGCCCGTCCCGGGCCAGCCGGTTTCCCTGAGGGCCCTCCAGGCCCTTCTCCTCCAGGCTCCCCTGGCCCTGGAGAGTTCCCACCCTTGGCCCAAGGAGGTGGCCCTTTGGGGTTCTTCCCGCGTGGGAAGCTGCAGGCAAGACGAGCCCTACCCGGTCTTCATGCAGGCCAAGCCCCTTTTGCGCGGACCCCTAGTAGGTGCCAAAACCCCGGAGGGTTCGCGCAAGAGGGGTTAGCCACGTTGGGGACGGCTCTTTTCCCCTTGTGATGAGGTATCCTGGAGGTGCGCGGAGGGAGGGTTTTGAGGGGGGTCCGCGCGGGGGAGCTTGAAAAGTGGCTACTGGTGCCCTCTGGTGAAGGGGGGA # Right flank : GCGGGAGCAGCCCCAATGGTCAGCTCAAGGCTAGGTAGAATAAACAGAGTGTGGGTAGCCTTGTGTTGCTACTAAGTAGCCATGCATAGACTTTGCCCCACTTCCCTCTCCAGGCGCTCCCGCAGTTTCCTCAACGCCTCCTCCACCCCTCGCCTCAGCTCCTCCACGCTCCCGTAGTACCGCCGCGGCAGCAACCACCCCTTCACTCGCCGCCACACCGTCTCCACCGGGTTGTACCGCGGACTGTACCGCGGCAGGTACACCACCTCCAACCCCCGTCCCCTCCACCTCTCCCTCCCCTCCCTGAAACCCCGCGACCGGTGAAACGGCGCGTTGTCCAGCACCACCACCCCCCTCACCCCCTCCCTCGCCACCTCCCGGCTCAGCCCCTCCAGGTACGCCACCACCTCCCCCGTCCGACAACCCCCAGGCAGCAGGGCGTACCCCAGCCGCCACCGTCCCTCCCCCAGCCACTCCAGGTGGGCCACCGCGTTCACCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCAAGCTGAAAAGCTTGGCTACGTTGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //