Array 1 380-1405 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYZ01000076.1 Neisseria meningitidis strain MRSN431228 MRSN431228_contig00076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 380 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 446 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 512 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 578 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 644 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 710 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 776 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 842 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 908 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 974 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1040 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1106 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1172 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1238 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1304 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1370 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : CATCAAATCATCCGCCGCGATTCGATCGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 30-593 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYZ01000077.1 Neisseria meningitidis strain MRSN431228 MRSN431228_contig00077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 96 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 162 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 228 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 294 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 360 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 426 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 492 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 558 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCAAGATATATCAAAATTGTAGATGAAAAG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //