Array 1 173834-172158 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGCR01000015.1 Escherichia coli strain NS-NP026 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173833 29 100.0 32 ............................. TGAAATTATCATGCCAGCGCCATCTTGATGAT 173772 29 96.6 32 ............................A TCGAAAAGCTGGCGGTAAACAAAACGCGTGAA 173711 29 100.0 32 ............................. TCGCTTTTGGCTGTCTGGGCGAATTCCGGAAC 173650 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 173589 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 173528 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 173467 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 173406 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 173345 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 173284 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 173223 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 173162 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 173101 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 173040 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 172979 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 172918 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 172857 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 172796 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 172735 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 172674 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 172613 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 172552 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 172491 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 172430 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 172369 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 172308 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 172247 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 172186 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 200235-199535 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGCR01000015.1 Escherichia coli strain NS-NP026 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200234 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 200173 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 200112 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 200051 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 199990 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 199929 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 199868 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 199807 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 199746 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 199685 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 199624 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 199563 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //