Array 1 1401187-1403092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021023.1 Sedimentisphaera salicampi strain ST-PulAB-D4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1401187 33 100.0 34 ................................. GCCTTCCGTATAATATCTTTAATTTGATCGTCTG 1401254 33 100.0 33 ................................. ATTTTTTTTCCTTTCCGATTACCAATATTTTTT 1401320 33 100.0 35 ................................. TATTCCCTTTCGTTATAGGTTATTCAGCTCATTTT 1401388 33 100.0 34 ................................. TATATGAATCAAACGAAAAGGAAACATTGCATTG 1401455 33 100.0 31 ................................. GTGTTAGCAGGACAACGGGCGGAACTATGCT 1401519 33 100.0 34 ................................. ACCTATGACGGGGTGAGCTACACTGTAACCGGTG 1401586 33 100.0 34 ................................. GATTCTTTTTCGTCAACGGTTTTCCACGTTCCTT 1401653 33 100.0 34 ................................. GATTCTTTTTCGTCAACGGTTTTCCACGTTCCTT 1401720 33 100.0 35 ................................. TTTAAATCGTCAAGGTGTCGTTGGCAAGCAAGCTT 1401788 33 100.0 33 ................................. TTGTTCCCTTTCGTTTTTCGTTTTCTTTATCAG 1401854 33 100.0 37 ................................. GTTCTGGAACAAAGATAATTGGCAGCCGCTTTGTCAG 1401924 33 100.0 33 ................................. ATCCCCAGTCAGTAACTGGTATCCCGTGTCAAC 1401990 33 100.0 33 ................................. ACACCTCAGCAGTTATTGCTGATGACTTGGACA 1402056 33 100.0 34 ................................. TATTAGTGAGAAAGCAGCAGCAGATCAGGCCGTA 1402123 33 100.0 34 ................................. TATTAGTGAGAAAGCAGCAGCAGATCAGGCCGTA 1402190 33 100.0 34 ................................. GAAAGTGCTGCATATTGCGCAAGGTATATTACTA 1402257 33 100.0 34 ................................. CCGCCGCCTTGCTTAAAGGTAACGGCTTGAGCGG 1402324 33 100.0 34 ................................. ACCTTGTGCGGTATGTGCGGTCTTAGACTTCTGC 1402391 33 100.0 33 ................................. AGGTATTGCGTTTCTATTAACGCAATCGAAGAC 1402457 33 100.0 33 ................................. CTGCCCGGAATGTTCACAAAGCAGGGGTATCCA 1402523 33 100.0 35 ................................. ACATCTATTGACGATTATCAAGACGCAGTTACTGC 1402591 33 100.0 35 ................................. CTTGTGTTGAACAGCGAAGCGAAAGTTGCGGTAGC 1402659 33 100.0 35 ................................. CTTGTGTTGAACAGCGAAGCGAAAGTTGCGGTAGC 1402727 33 100.0 35 ................................. AAGCATACCATCAGGAAGCTGCTGCCCGCAATAGC 1402795 33 100.0 33 ................................. TTTGAAAGAGTAGCGTATCCCTCGCTTATTGCT 1402861 33 100.0 33 ................................. AATCGTATTGAGTAAAGACTACAATTTTGTAGG 1402927 33 100.0 34 ................................. AAAATAGTCTACGTCCGAAAAATCAAAGTTGTTT 1402994 33 100.0 33 ................................. AGACCTATATGGAAAAACGGCGGAAACCTTCAC 1403060 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 29 33 100.0 34 GTCGCTCCCCTCACGGGGGGCGTGGATTGAAAC # Left flank : TGGAAGATTATCCACCTTATTTTTGGAAATAAAAATGCTGGTTTTGATTACTTATGATGTAAATACTCAGACAAAAGATGGAAGCAGGAGACTTAGGAAGGTTGCAAAAGCATGCGAAAATGTAGGGCAGAGGGTTCAAAATTCTGTATTTGAATGCCTGCTTGAACCTGCACAATGGGTTGAATTGAAGGATAAATTGTTGAACTTGGCCGATATGGAAAAGGACAGCCTTAGATTTTATTATCTTGGGAAAAACTGGCAAAGACGTATCGAACATTTTGGATCCAAACCTTCCTACGACCCTGAAGGACCGCTCATTGTATGATGCGAACCCCAAGCGCCTACAATTTACTTGGGAGGTTCGCATTTTTCGTAACTTATTCTTTAACAACTGAATAGAGTTGCATAAAAAAAGGCTGGTTTTCTTTTTTTATGTTTTGGCTAAGGTTCGCAAATATTGACTTATAAAACCTGATAAATAAACTTGTTACCATTAAGCT # Right flank : CGAAAATTGCGGATTGAGAAAAAAAGCTGAAGCAGTATAATATGCCGCCGGAGAATCAAACATCTAAACGGTGGTTTATGGCTTACACAGTACTTGCAAGAAGATACCGCTCCCAGCGGTTTGAAGATATAGCTGGGCAGGATGCAATATCCCATACAATCAAGAATGCGATCCTTTCGGAGCGTGTTGCGCATGCGTACCTATTCTGCGGCACACGCGGTGTAGGGAAAACGACGATGGCCCGCGTTTTGGCGAAGGCTCTGAACTGCCAGAGCGTTGATGCGCCCACAACCGATCCCTGCTGCGAATGCGAGAGCTGCGTGGCGATCAATTCTGGCGATGATATAGACGTAATCGAGATCGACGGGGCGAGCAACAACGGCGTTGAAAACATCCGCGACCTGCGTCAGAATGCGATGTATCGGCCTGCGAGGGGGCGGTATAAGATATACATCATCGATGAGATTCATATGCTCAGCACGGGGGCGTTTAATGCGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1570812-1568148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021023.1 Sedimentisphaera salicampi strain ST-PulAB-D4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1570811 36 100.0 29 .................................... GACCAGATTCACGTTTCTCTAAGTCTGCG 1570746 36 100.0 29 .................................... ATATTCTGCCCAGCGTTCTTGGTAACCAA 1570681 36 100.0 30 .................................... AAATAAAAGCAATTGACCAAATCGAAAATT 1570615 36 100.0 30 .................................... AATTTTAGTTCTTTGTACATTTTGATACCT 1570549 36 100.0 29 .................................... TTGATAAAGGTAGTGAAGCTGCTGGATTT 1570484 36 100.0 29 .................................... CACGGTGTCAGTCGGACCAGTTAACATCA 1570419 36 100.0 30 .................................... TTCTACCCCTTTTTTTGTTATTGGAATGTT 1570353 36 100.0 30 .................................... CGTGAAGCCGAGAAAGAAAAGCAAAAATCT 1570287 36 100.0 30 .................................... TAACAAAGCGGCTTAATGTTTGGACGACTC 1570221 36 100.0 30 .................................... AGAGAACTCGCCGGATTCAGCTTGACCAGC 1570155 36 100.0 30 .................................... AAAAACCTCCTCATCAGCTGAGCTCCCATC 1570089 36 100.0 30 .................................... GCGACATTTAAGGTGTCTGGCTTACCTACA 1570023 36 100.0 29 .................................... TTTTAACGCCGATGGAAAAGCTCAATAAG 1569958 36 100.0 29 .................................... ACGGGCTGAACAAGAAAATATCTGATAAA 1569893 36 100.0 30 .................................... TGTGCAGCTATTGCAAACAGAAGCTTCCTG 1569827 36 100.0 30 .................................... ATATTTTTCGTTCCTTATTGCTACCACACC 1569761 36 100.0 30 .................................... CTGCCGGTGGTGCGAGTTTAACCGATAGGC 1569695 36 100.0 30 .................................... TGTCTTGCTTTTGCTGCCCACTACAACGTG 1569629 36 100.0 29 .................................... GTTATTTTTTGGGTCGCTGTAAAAAGCTT 1569564 36 100.0 29 .................................... TCCGGACTTATCAAACCACTGTAAAAAGC 1569499 36 100.0 30 .................................... GCGGACAGTGGTCTTTGGCGGGTTTGGTCT 1569433 36 100.0 30 .................................... CTGGGATATAGTTTTAATCTCAGTCAATGC 1569367 36 100.0 30 .................................... ATCCGACTCCTGCGGACTTTCCATCTCAGG 1569301 36 100.0 30 .................................... CGACTGATGTTGTAGATACAAGCGAGTCCG 1569235 36 100.0 30 .................................... AAAGATACACCTGGAAGCTTCCCGATTGGT 1569169 36 100.0 29 .................................... CCAAGCATAGAACGAGAAGGACCTTTTAT 1569104 36 100.0 30 .................................... GTGAAGCTTTCCAAATTCAGAAGCTTTTAG 1569038 36 100.0 30 .................................... AGGGAAGCCATATCTATTGATATATTGTGT 1568972 36 100.0 29 .................................... AAGGTTGGCGTGAGCGTCTCGGCGGTAAA 1568907 36 100.0 29 .................................... CGATGGGCGGAGATTTCGTTTCCCGCTCT 1568842 36 100.0 29 .................................... CCAAGCATAGAACGAGAAGGACCTTTTAT 1568777 36 100.0 30 .................................... GTGAAGCTTTCCAAATTCAGAAGCTTTTAG 1568711 36 100.0 30 .................................... TGGTCATCGCTCATTTCGTATTTACTCGAA 1568645 36 100.0 30 .................................... CAGCCGAATTCTTCAGCTTCCTTGCTGTCG 1568579 36 100.0 30 .................................... TGAATAATCTACAAGGTTATAGATACCTTG 1568513 36 100.0 30 .................................... CGGCGATATGCAGCTTGTGATAATACTATG 1568447 36 100.0 30 .................................... TGGACTTCCTCTGCCACGTTACTATACCAT 1568381 36 100.0 30 .................................... TCAACTCTGTCCATATACTTGAACGATTCA 1568315 36 100.0 29 .................................... AACAGGCACAGTGTCCGGCACTTCTACTT 1568250 36 100.0 30 .................................... GCAGATGTATAACTTCGAGATATAAGTCCT 1568184 36 94.4 0 ...............................G...T | T [1568150] ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.9 30 ATTGTAACTGATCCGAATCTGTGAGCAAGCCACAAC # Left flank : AACAATATCGCAAAGCTCCGGCCCGCTAATGGTGGGTCTTCACAAAACGGCAGCCTCTCTCTATAAGTGTTTTGCGGGCGAGGAAGATTCTTTGGAGCTTCCTGATTTCTAAGGACTAACAATGGAATTAAGCGGGTACAGGATGATGTGGATTTATGTTTTTTTTGATTTGCCTACTGATACAAAAAAGGCAAGAAAAGATTACTCCGAATTCAGAAAAAAGCTTTTAAAAGACGGCTTCACAATGGTACAATATTCGGTGTATGAAAGGCACTGTTCAAGTGAAGAAAATGCAGATGTACACCTTAAAAGAATCAAATCATTTCTTCCCCCTGATGGAGAAGTTCGAATCCTCACCATCACTGATAAACAGTATGAAAGGATGCACATTTTCTGGGGAAAAATGCGCAAACCTGCACCTCCAGCCCCAAAGCAGCTTGAATTATTTTAACTGCCTATCCTGCCTAAAAGCTTGCTGCACAGATTCTTATGAAAAATGT # Right flank : TACTATAAATATCTTAATAAAATTAGCGGTTTTTCTGTAAAATGCCCAGCTTATTGCAAATAATAATTTTTAAGCAAAATCTGCGAATATCAGCTTACGATATTGAAAAACAGATACGCAAACGGGGCGGTGAACACGAGGGAATCTACTATATCGAGGATTCCTCCAAAGCCCGGGAGCTTATCGCCGGAGTCTTTAATGCCTGCGTCTCTTTTAAGCATAGATTCGGCGAGGTCTCCAAGCTGACCTGCAAAGGCGAATATTATCCCGAAAATCACCCCTTGCCACCAGAGCATCACAGAGAATATAACGGAAAATGCAGCACCTGAGACAGCAGAAAAAATGCAGCCTCCAATCATTCCTTCCCATGTTTTCTTAGGGCTCACTGCAGGGGCAAATTTTGTATGCCCGAACATCTTTCCGAATGTGTATGCCCCCACATCGCACATCTTCACCACAGCAATAAACACAATCAATGCCGAAATGCTGTGTTCCACTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAACTGATCCGAATCTGTGAGCAAGCCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //