Array 1 134618-135709 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN300347.1 Porphyromonas gulae strain COT-052 OH3498 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 134618 36 100.0 30 .................................... TATATCTCGAGAAAAGAGTATTGTCTATTT 134684 36 100.0 30 .................................... TGCAGCGTGTGAGAGCGGAAATGCAGGTAG 134750 36 100.0 30 .................................... TCTTTTCATGCTCATTATTATTATCTAATT 134816 36 100.0 30 .................................... CCTCTCTGGTTTAGAAGAGATAGTTTTACT 134882 36 100.0 30 .................................... CTGCGGTAAGGACTTAGAAAAGTCCATCAG 134948 36 100.0 30 .................................... TGGCTTTCATCTTTTCATTGAAAAGGTGAG 135014 36 100.0 30 .................................... TGGTGGAGATCAAATTCAAAACCAATTATT 135080 36 100.0 30 .................................... TGGTAGAGGGTTGGGAAATTTAAACCATAT 135146 36 100.0 30 .................................... AATCGGTCAAACACTTCATGCCACGCACGA 135212 36 100.0 30 .................................... CGGCCATCGCAAAGGGTGGTCTCTACCTCC 135278 36 100.0 30 .................................... CATGCATACGGAGGTGTTCTGCCACCTCGA 135344 36 100.0 30 .................................... AGAATGCTCCGGATAATATCTAAAATGAAT 135410 36 100.0 30 .................................... ATATTCTGTTATATAATCAATAGGAACATT 135476 36 100.0 30 .................................... TTCAGGCGTGTGCATGCCTGATTTGATTCC 135542 36 100.0 30 .................................... TACTAGAATGATATATTGAAATACTGTTCT 135608 36 100.0 30 .................................... GGCGGGCGAGTTCTCCGCGGTTCGTCTACA 135674 36 97.2 0 ......................T............. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Left flank : GAGCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCTTGTCCGAACTGACGGACGAATTTTATAAGAATGGCAACGGTGTTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGAAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCCGTATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGGGGCGAACTTTGAACTTTTGAGTGCGAACCGGCAGGAACGTAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATCCTACTAAAATGATGATGACAGACTGTTTTTCACCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGT # Right flank : CATGATTCCTGATTGGTGGCTTGGGCGTTGGAATGTAGAGGGAGGGAGTAGCGCGTAGGGATTCTTTCGCGTTGGGGCTTTTTCGCTACATTTGCAGGCGGACGAGGTGCTCCCCTATTCGGTGAATTTGTGCCGGGAGTGCTTTCCCTTTTTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCCTCTCTTTCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCCTGTGTGGTTATATACCGGCGCGTATGGCTGATGCAAACCTGCTGTATGAGCGGTAGAGCCTGAGAGCCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCGCCAAGTTCGTGCTCGAACTTGGCGGGTGCCTCTTTATTTATACCTCCCCTAAAGGCCTTTCGAGGTGTCCGATTTATATCAAATCGGCTTGCAATCTATATATTTATCGCAATCGATTTATATATAAATCAAAAACGATTTATATACAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 1404-143 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN300367.1 Porphyromonas gulae strain COT-052 OH3498 scaffold19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1403 46 100.0 30 .............................................. AAGTCAGAGGAAGCCTTTACTTTAACCGAA 1327 46 100.0 30 .............................................. TGAGCTATGAAGATAAAATACACTCCACCG 1251 46 100.0 30 .............................................. GAATTGTTTGTACTTTTGCAGTGTAGGGAA 1175 46 100.0 30 .............................................. TCGCTTCGGCTTACATGATAAGCATCATTA 1099 46 100.0 30 .............................................. TTCTTTTTCGATATACTTCTTTATTTGCTC 1023 46 100.0 30 .............................................. TGCTGGAAACTCTTTTGTAGTCGTCTCTCT 947 46 100.0 30 .............................................. CCTTTTGAATTTATCTTCACTGTTTATTCG 871 46 100.0 30 .............................................. AGAGCTGTTTGGAAAGAATACAGTGCAAAC 795 46 100.0 30 .............................................. ACTATGAAAGAATTGAAAAACTTTCAATGG 719 46 100.0 30 .............................................. TTGCTTTTTTTGACTGTGTATCTATCTGTC 643 46 100.0 30 .............................................. AGAACTGTTTGGAAAGAATACAGTGCAAAC 567 46 100.0 30 .............................................. ATACCTAATTCTCAAAAACTTTTTGAATTG 491 46 100.0 30 .............................................. ATAAGACAAATCAACGAAGAATTTACCAGT 415 46 100.0 30 .............................................. CTTCAAGATGCAGGAGATGTATTACGAAGA 339 46 100.0 29 .............................................. ATCTCCCTCGATGAGTACTATGAGGGAAA 264 46 100.0 30 .............................................. AACATTCAAAATCCAAAGAAAATGGAATCA 188 46 97.8 0 .............................................C | ========== ====== ====== ====== ============================================== ============================== ================== 17 46 99.9 30 GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCAATACATATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGATACTGCAGCCGACAGGAAACGTGCAGCAACCTTTCGCAAAAACCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCCATCTATATTAGGCACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGAGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCGGCCATGGAGATCATTTGTGGGAAAGGAAGAGAATATTATCAGCCGCCCCTCCAACTTGAGCTTTTTTGAATATATCCTAGCATCTTTTGCGGAATTAACCCTTTTTATCTGGGGTATAGAAATTAAAAAGCCGAGATTTCTCTCGGCTTTTCGGTTACACACAGATGTTTTTTTCTTTCTCTCAATCCCTCTCTATATCCTCTATTACAGGTGATTACGGGGATTCT # Right flank : CGAAAAAATGGAAAGCACAAAACCCTGAAAATAATAATCAACTCAAAAATCATGCACCAAAAAAGTTTTCAACAACGAAGATGAGTTTGGAATGATTCCAAACAAGCATCTGCGGAGAAAAGAAAAACGAGGCAAAAGTAGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1596-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN300379.1 Porphyromonas gulae strain COT-052 OH3498 scaffold39.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1595 46 97.8 30 G............................................. TTCAGAAAAAGACAAAAGAGTCTCTATGGG 1519 46 100.0 30 .............................................. CGACACCACCCATACAGTCAATAACCTCAC 1443 46 100.0 30 .............................................. AAACATCTGAGACAACATACCCAATACCTG 1367 46 100.0 30 .............................................. CCGAATATGATCCAAGAGCTGATGATAGAC 1291 46 100.0 30 .............................................. GGTATATAAGCAGTATTTTGTGCGAGATGC 1215 46 100.0 30 .............................................. TTGACAATAGATATCGTCATCTTCATAAGT 1139 46 100.0 30 .............................................. CCAGCACTTGTCTATTATCTCTTCTGCATT 1063 46 100.0 30 .............................................. TCGCATGGATACCGAAAGGGAATACAATCC 987 46 100.0 30 .............................................. AGAGCCATCAGTGAAATGCGCTCTGAGTAA 911 46 100.0 30 .............................................. TTGTTTAACTGTTGCTTTCATTTTCTTGTT 835 46 100.0 30 .............................................. GGTAAGCATCCTTCCGCATCTCAACAAGGC 759 46 100.0 30 .............................................. CAATTCTTACTTTTCTACGAAGTTTTCTTC 683 46 100.0 29 .............................................. TTTATATCAGACTCTATGTCATCCAATTG 608 46 100.0 30 .............................................. ATCGATTGGTCGATTCCATTCGGTTGAGTG 532 46 100.0 30 .............................................. CCAGAGGCCGTTTGTTTCGGCATCTAGAGT 456 46 100.0 30 .............................................. TATTTTCTTTTCCCTCCTACAATTATGCTC 380 46 100.0 30 .............................................. ATCAGGTTGTTTTAAATATCTCTATTATGT 304 46 100.0 30 .............................................. AAAGAGCCATATATCCAAAAAATTAAGAGG 228 46 100.0 30 .............................................. GGAATACAAATCCCCCAAGGAGCGCGGCGA 152 46 100.0 30 .............................................. TGGAGCTCAGCGTAGCGAATAAGAATGGTA 76 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 99.9 30 ACTGGGAATAGCTTTCAGATTTAGTAATTTTGTTGCAACGCACAGC # Left flank : TACCTCGGTACAGCGACAGCCCTCGATCCGATCCGAGATCGCAGAGCGGAATCGTGCAGCTACATTGAATCACATGCAAAAGGATAGCATCTTGGCATAGGCCCCACCACATACATATCCGGACTGCACCCGTCGGAGTTCTCCGTAGAACTCGGCGGGTGCTTCTTTTATTCCGACTTCGGAAAAGGCTTTTTGGGGTCTGCGATTTATATATAAATCACTTACGATCTATATATTTATTGAAAACGATTTATATATAAAACAGAAACGATTTATATACAAATTGAAAACGCTTTATATACAGATTGTTGTCCGGCTTGTTTTAATTCGTATTTTAGTCCGTGAAAGTCCATTTCCTCGCTACTTTTGCCTCGTTTTTCTTTTCTCCGCAGATGCTTATTTGGAATCATTCCAAACTCATCTTCGTTGTTGAAAACTTTTTTGGTGCATGATTTTTGAGTAGATTATTATTTTCAGGGTTTTGTGCTTTCCATTTTTTC # Right flank : CTGATTCCATTTTCTTTGGATTTTGAATGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGAATAGCTTTCAGATTTAGTAATTTTGTTGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 35395-34995 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN300355.1 Porphyromonas gulae strain COT-052 OH3498 scaffold16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 35394 37 100.0 36 ..................................... CGCGCTTTTTGCAGGGAGTTGGTTCAGCAAAAACCC 35321 37 100.0 38 ..................................... TTTGACTGTGGTCCATTGGTCATTAACCCAAACAAGGA 35246 37 100.0 35 ..................................... TTGATAGTTACTATGTTAAAGTAGCTCACCAAAAT 35174 37 100.0 35 ..................................... ATGAATGGTGCAGCAGCTTTCATCACGATATATAT 35102 37 100.0 34 ..................................... GGAATAATGGCAAAAAAAAGAGCCATCTTGATTC 35031 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : ATGCAGGGGTGAAGTTCTCTTCGATGCACTATACTTTCCAAGGCAAGGACTATCCATACGGTTCTTTCCCGACAGAGAGCGAATTGGGAGCGCATCTGTCTGCCATCAAGCAGGATATTTTGGGTCGTATCCGAGATGTTGTAGAAGGGTAAGAGCTTAGAACCGGCTTCGGAGGTCTCGGAAGTCTCGGATTTCAATTATTCCGATCGGATTTTCTCGAACCGCAATTGCTGCGATTGTGGCGCGTGTTTTCGGGAAAAGTGGCGCGGGATTTTTTTCGCTGTGGCACGGGAAGTAAAAAATTCTCGAACCACAGCGAAAAAAATCTCGCGCCACGTTTTTCGGAGCATCGAAATAGAAAATTATGGTGCGCAAACGGCCTTGGCTCGCACACAAGCGGAAAGCTGTGATTATGTGCTCTTATCTTGTGCAAAACACAATATTAACCGCTCCAAAATCTAACATGGAAAGTCCAAGTGATGATGAGTAGAGCATAAAGA # Right flank : AACTTGAGTGACTACAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATGCAAGTTGAGAAATGTAGCTATAACACCATTTTTGCTGTTGAGCTGATTATATCTTATTGATATACAATCAGATTAGCTGATTTTCTATTTTCGAAAATCAGAAAGAGGGAACCTTCGTTTTTGGCATTTTCGAAAATAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGCGAAACGCCCCTGTTTTTCGAAAATAAAAGTCCCAATTCCGGTTTTCTCCTATTTTCGAAAAACGGGAGAAAAGAGTTGTTTTTGCAACCGGCTGATAATCAGTACGTCAAAGAGCGATGCGTGGTTCGAGTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTCCTCCGGCTCTTGGGTGGGGTCGGATGTCCGCTCATCCAAGCTGCGGCATAACAATGCTGACAGAGAGGAAGAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12419-16525 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN300394.1 Porphyromonas gulae strain COT-052 OH3498 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12419 30 100.0 35 .............................. GTAGAGGGCTTAGGAGAAGAGGTGATCGTGCGAAA 12484 30 100.0 37 .............................. TCGAGAGAAGCGACAAGAACATACGGATTCTTCAGCA 12551 30 100.0 35 .............................. AAAGGAGCCTAATACAATTCGCTTCATATAATCCA 12616 30 100.0 37 .............................. GAGAGGAGAAATCATAGATGATGAACTGGATAGGTTT 12683 30 96.7 37 .............................C TTGTATATCTTTCAGTGCCTTCTAAATCTATAAAAGT 12750 30 100.0 36 .............................. AACGGAGGGAAAAGATTATCGCCAAAGCGAAAGAAC 12816 30 100.0 36 .............................. AGATTCGACAGTCTCCAATGCTTCCATAAATAATCG 12882 30 100.0 36 .............................. TAGCAAAGAAAAAAAACCGCCACAGATCATTACCCT 12948 30 100.0 36 .............................. CTGTGTGAACTATATCTACAATGAGGTGCGAAAGTC 13014 30 100.0 36 .............................. ATCAGAGTAAGGCCTCTGCGGAGTATAGCATTGGTA 13080 30 100.0 35 .............................. GGCTGAAGAAAAAACTTACACCCAAATCCAATACC 13145 30 100.0 36 .............................. TGAGTAAACAGGTAAGAAGCCTATAAAGTTCATTAC 13211 30 100.0 36 .............................. TCTATACATCTGTCATTTTCTAGAAGACTCTCTCTA 13277 30 100.0 35 .............................. AGAACAACGCGAGGCAGCCGCTGACGGTTTCGGGA 13342 30 100.0 36 .............................. ATAATAACCTCTTAGGCAGTATGCCAACCGAAAGAA 13408 30 100.0 36 .............................. GGTTAAAGTAGTTCCTTATAATTTCCGAGTTAATAT 13474 30 100.0 36 .............................. CAGATAGCTTGGTATACTCTCTCCAAGTACTTCAGC 13540 30 100.0 36 .............................. TATAGAGAGCGAAAGCAGGATTCGCGCGCTTCCGTT 13606 30 100.0 35 .............................. TTTAGCCCTAACATTCCGAACGTCACCAAGAAACA 13671 30 100.0 36 .............................. ACCGCTACCTCTGGCCGGAGACTCTCCGAGTTATTG 13737 30 100.0 36 .............................. TATGGCCGAGCGTTATGGCTCATTCGGGAATTTCAG 13803 30 86.7 33 .........................TGC.C TTGTACAGGCGGGGGAGGAGCAGGAACTAACAA 13866 30 100.0 36 .............................. TAAGAAAAGAATACGATTCATGCCTCTGCAATCGCG 13932 30 100.0 37 .............................. CTTCAGATTTATTCCAAAATATGGTAAACGGTCTAGT 13999 30 100.0 36 .............................. CGCATGTGGCAATGGTCTCGATTCCATTCCACTTAG 14065 30 100.0 35 .............................. CCGCAGAAGCATTGCGGAACGCGCTGAAGGAGAAG 14130 30 100.0 36 .............................. CGGCGTGAGGAAATACTACGTATTGACCAAGAATAT 14196 30 100.0 37 .............................. AGTCTCAGACATGAAAATAACAAGAAACTAAACAAAA 14263 30 100.0 35 .............................. TTTGCAGTATCTCCTCTTGGACTTCTTTCCACACT 14328 30 100.0 35 .............................. TACATTTTTATAAATCATTTCTCTCGTCTTTGTGG 14393 30 100.0 36 .............................. TACTCAGTGATAAAGTCATAAGAGAAGAGTCTATCA 14459 30 100.0 36 .............................. GGGAGCCTCGCGCTCCGCTCGCTATGCGCCCCTGTT 14525 30 100.0 36 .............................. TTGTGGCTACTGCCACGCCATCGCCCAACCGCTTTA 14591 30 100.0 36 .............................. TATTGGAGTACAAATATGCAAGGGAAATATCCCTCG 14657 30 100.0 37 .............................. ACAAGATGATATTCTCATTCCCTGCCGGCTATGTGTT 14724 30 100.0 35 .............................. ATTGCCCCACACCTTGACGCTCACCTGTTCTGTCC 14789 30 100.0 37 .............................. TTGTATTAAGGCAGTATACTTATACGGATAGGACTAA 14856 30 100.0 36 .............................. GTCAAATCCATCTTTTATGTAAAACTCAACCTCATA 14922 30 100.0 36 .............................. TGACGTAACAGATGAAGGGCGGTGGGAGCCGAGGGC 14988 30 100.0 36 .............................. TGATTTTATCTTCCAAATCCCCTTCTCAGTTGATTG 15054 30 100.0 36 .............................. AGGAGCTGGAAGAGGCTTACAGAAAGAAGCGGCAAC 15120 30 100.0 35 .............................. GATATGAAAGAACATGAGCCTTTTGAGTATGTCGT 15185 30 100.0 34 .............................. TGAGGATACTTTTCTGTGTGTGCATATACATACG 15249 30 100.0 35 .............................. GGTCGAGTTAAAAGGAAAGGCAATGCGCGTCGTTA 15314 30 100.0 37 .............................. ATCTTTGTCAGATTCATCCCCAAAACAAAGAGGAGGA 15381 30 100.0 36 .............................. GCTATCTTTGTAGCAGAAACACTGGATTAAATCAGA 15447 30 100.0 36 .............................. CTTGTATAAGTATCTAAGGCATCTGTATATAAGTTG 15513 30 100.0 34 .............................. TTCCTTTACCCCAACCCTTGCAGAACTCATCTCC 15577 30 100.0 36 .............................. CCCTGTCGGAAGGTCGAAGGGGCGCATCACGCCCTC 15643 30 100.0 37 .............................. AAGTTGATGAGTCTTCTGAGTATGGGTCCTTGATTCA 15710 30 100.0 36 .............................. AAACGCCAAAGGAAACGCTGAAATCCTTTCTCACAA 15776 30 100.0 36 .............................. ATATAAAGAGGGCTTTATATTCTTCAATAAATCCAT 15842 30 100.0 35 .............................. GCGATAAATTTTGTGTGGCGGCGTAAGAGTAAGAC 15907 30 100.0 36 .............................. CGCAGACGCGTATCCGCTTGGAGGCCAAGAAGCAGC 15973 30 100.0 36 .............................. CGATGATTTCCTCGGGGTAGAAGACGGGGTTTCCCT 16039 30 100.0 35 .............................. CCGATCAGCTGCATGATTTGGTCGTTGATGGCATC 16104 30 100.0 34 .............................. TTCCTGATCCCACACATTCAAAGAATCCTACGAG 16168 30 100.0 35 .............................. CAGCGGACATTCGTCCGCAAGATGGCCCTGTGTTA 16233 30 100.0 36 .............................. TCTATTGTTGTTAAATCTTTTCAAGTGATGCCGTGA 16299 30 100.0 35 .............................. TATTTGATTAAATCAAAGTCGTAAGCAAACACGTA 16364 30 100.0 36 .............................. GGGTATGATAGGCGGTTTAGCTTTTGGAGGATTTTA 16430 30 100.0 36 .............................. CATGAATATAATAGTATTACTCGTTTCATTAGCCAT 16496 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 63 30 99.7 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTTCGGTTTGGTTGGGGAAGTAAAAAATTCTCGTTAAGGAACAATTGAAATGGCATGCAACGGCAAGGTTCTCCGTGACGGAGCTAATTTTTAATTTCCGCATGGTGCAATTGAAATTGCAGTCCCTTAACGCCCCCGCCGTTCAGTTCGAGCGTTTTAATTCCTGTATGGTGCAATTGAAATGATCTCTTAGCATTCGCGCGGCATCGGGAGCTTCAGTTTTAATTCCTGTATGGTGCAATTGAAATAGATTGCAAGCGACTATGAAGCCGGTGTTGCCCTAGTTTTAATTCCTGTATGGTGCAATTGAAATCGAGCGGGATTTCAATAAAAAGGTCGAGAGGTTTTGTTTTAATTCCTGTATGGTGCAATTGAAATTATGGCCGAGCGTTATGGCTCATTCGGGAATTTCAGGTTTTAATTCCTGTATGGTGCAATTNATTCCTGTATGGTGCAATTGAAATTATGGCCGAGCGTTATGGCTCATTCGGGAATTTCAG # Right flank : TCCGTCACAAATATAGGTTTTTATGTTTGAATGTGAGAGGGTTACTAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCGAGGGGTGCGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGAGGGTTAATCATGGCAGAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //