Array 1 129508-128883 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIQ01000028.1 Streptomyces sp. NP10 contig00028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 129507 27 100.0 34 ........................... ACGGCCGCCAACCGAGTCGAAGACCTACAGGGGC 129446 27 100.0 34 ........................... GCGATGCCCTGGACGCTGCTCGGTCCAGCAACGC 129385 27 100.0 34 ........................... GTAGGGCAGGCGTCCGCGCTGACACTGTCGTAGC 129324 27 100.0 34 ........................... GTGTTGCCTAAGATCGCCTCCCCTGCGGGGGCGT 129263 27 100.0 34 ........................... ACCCCGACCGTCACCCCGATTGCCGTCACCCCGT 129202 27 100.0 34 ........................... CCGCCCCAGCCCCCCTCGACGCCCAGCCCAACGT 129141 27 100.0 33 ........................... TCCTGGGCTGGACCATCGCGTTCGTCGCCTTGT 129081 27 85.2 34 ..................G...ATT.. GCCACGAAGCGGGCGAGGCGGTACCGGTGAGGGT 129020 27 77.8 23 .......A..........GC..CTT.. TCCATATTCGTCTTCATGTACAT Deletion [128971] 128970 27 81.5 34 .T................GC..A.T.. TTGAGGGCGCGTCGGTTGGTGCCGACGGGAGTGT 128909 27 81.5 0 TG.................C..A.T.. | ========== ====== ====== ====== =========================== ================================== ================== 11 27 93.3 33 GCAGCCCGCGCGAGCGGGAGTGGCCCG # Left flank : CAGGATGAGGACCGGCCGGTCCTGTTGGCTGGCTCGTCCACGCAGGCCTCGGCACACCCCCGTCAACCGACGCCGGCCGAAAGCAGACCCGCTCGCGGAGACAGTAACATCGCCCCCGCGAGCGTCTTCACCCTTCCAGGCGGGAGGAGCTGCGATGCCGGTGCGGCGGACGAAGCCTCCAAGTCCGTGGAACGTTCGGCCTCGACGACAATCACAGAAGGACGGCCCCTCTCGGGCAAACCAGCAACAATTCGTCAGCCTCGCCTGGCCAAGGCCAGCGAACATCTGATCCCTCCGGTCATCCCGAAAGCCGAGCCCTCTTCCCGCGCGGCCGCCGGATCCCCGAATTCAGGTTCATGACATGGGCGATGCGAGATCAGCCTGCCATCGATATGCTCAAACTCAACGCGTACGCCACCAGGAGTACCTGTTGGCAAACCTTGAGGCAGCACAAGCAAAGAAACAGTAAAGCAACTCAGAACACCCAGGTCGGGAAGGGC # Right flank : GACTGCTTCGCCGGAGAGCTGGCTCAAGCAGGAGCGATCCGGCTCTCGATCGCCTCGACCTGCCGCTCACTGAGCGGAGCCATCGCGAGGTGGCGACCCGTTCACCGATCGGCAAGTTCGCCCGGGCGCACGCGACACCGAGCCGTGGGCTGGCAACCTCAACACAAAGCCACAGGTCAAAGACATCGCCGTATTGCAACCCTCAGCAGAGCGAACAGGCGATTCTCATGTACCTGCACAAGTAGCTCTCACGGCATGTCTGAAGCAACCTCACATCGCCCCTGCTTCGGTAGCTGATACGCACCATCGCAAATGACATTGGAATGAGAATCACCTACGACAGGGACGTGAGAGTCAGCAGATGGAAGAGCCTCTGTTCCACTCCCTGTATTACCTCCACCTCGCCAAACTGCCCGAGGCTCAGGCCGAGAAGATCCGCCGGGCCTACGACTCCTGGGGCGACATCCAGCGGGCCATACCAGGCCATCTGACCTGGCACA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCCGCGCGAGCGGGAGTGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 131719-132479 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIQ01000028.1 Streptomyces sp. NP10 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131719 29 96.6 32 A............................ CCTCGCCGGACCTCTACATGCGGCTGGCGCAG 131780 29 100.0 32 ............................. AGGGCCGTGGCGCATCTGGTCGCCGAGGAAGG 131841 29 100.0 32 ............................. CCACAAGCCGCATACGTGGGTCTCGGCTCGAT 131902 29 100.0 32 ............................. CGGACCCACTCATAGGTGGCCGCCTCCGAGGC 131963 29 100.0 32 ............................. CGGCGTGCGGCAAGGATCCTCATCAGTGCGGG 132024 29 96.6 32 .......A..................... CAGGGTGCGGTACTGGCCGGGGCTGAGGGCGA 132085 29 96.6 31 ...........................C. CGTGCAGCGGGACGGGCCTGTTGTCGTCCGT G [132110] 132146 29 86.2 32 ..G.C..CT.................... TCGCCATCGAATCCCCAGAGATTCGATCATGC 132207 29 89.7 32 .......T.................GC.. AAGGTCGGCGTCCTGTCCGTGCACGGCATCGA 132268 29 86.2 32 .......CT...............G.T.. GTGAGCGTGTGGTGGGCGGCGAGCAGCAGGCG 132329 29 100.0 32 ............................. CCCGAACGGGCCACCGGCGCGACCGTCATGAC 132390 29 96.6 32 ..G.......................... GACAGGTTCGGTGCCGTGCAAGAAGCGGAAGC 132451 29 96.6 0 ..G.......................... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.8 32 CGAGTCAGCCCCGCTCGCGCGGGCTCAAC # Left flank : GGTACTTCAGCCCAGGATCCGCATGGCTGTCCGCAGCTTACGCACCGCGTACTGCCGGGGGCAACGACACGCTTGCTGTCCCCGGGCGCCGAGGCGTCAGCGAGTCCGTGACGGCAACATACTGCGCATCAGGCCCCACCCAGGCCTCCTGAGCCACCGCGACGACTCGAGGCGGGGCACCCAACCTGCGCGACAGTGCCCGGCGGAAGTCTCCGTCTGCCGTACGCATCCCGGGCAGCGCGTTGCCCAGGGCGTGCCGCATACCGCATCATCACGCCCATGGGTGATCCTTACCGTCAGCCCAACCCGGGGCACAGGCCTGCTCGGCCTGCGTTACGCCCGCCGCAACCAACTCGGCGCCACAGCAGACATCGAGGGAGGGGGACGGTGGGTGGCCGTCGACGAGTCAGGATGGGCCGGCGACCAACTCCACGGCCAAGAGCGCAGCCGTTACCTGTCGGTCGGATCAGTCGCCATCAGCGACGCCGACGCGGCCAGGG # Right flank : CCCTTTCTGGCCTGGGTGTTTTGAAGTGCTTTGCCAATCTCTTGCTCGCGTTGGCTACTCGAATGATGCCACACGGGTTGAACGTCAGGCTGAGTTCTCCGCCTTTTCCACGCTCGTGATCTGAAGAGACTGACGGGGTGGCAGCGTGGAGGGATGGGAGTTGCTGAGGATGTCCGGTACGAGGGTGTTGATCTTCGTCCGTGGGGGAAGTTCGATGGCGCGACGCGGATGGTGTATTCGCTGCTGTTCCACGTGATCGATGTGGGTGCGGTGGCTGGGGTGTTGTGGGACCGGTTCCTGACTCCGAGCCAGCGCGAGGTCATCAGCGCAGGGCTCGGCATGTCGCAGGAGCGTGCGCGTGCACTGGTGTCGTTTCTGGCTGCCATGCATGACATCGGCAAGCTGATCCCGTACTTCCAGTCTCTCGAACCCGTGGCGCAGATACGGCTGGGGGAGGACCTGCTGGCGGACGCGGGCCGTGTGGTGGAGGTGCCGCACGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGAGTCAGCCCCGCTCGCGCGGGCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //