Array 1 762360-756777 **** Predicted by CRISPRDetect 2.4 *** >NC_013851.1 Allochromatium vinosum DSM 180, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 762359 29 100.0 32 ............................. ACAGGTTCCACCACAATTATTGGCAGAACTCC 762298 29 100.0 32 ............................. TGCACGCCGAAGAGAGCCGGGGAAAAACACGC 762237 29 100.0 33 ............................. TTGATTCGCATGTCCGGGGGCTTGTCGGTAAAC 762175 29 100.0 32 ............................. CTGACGCGGCCCAATCTACAGACGCCCGCCCC 762114 29 100.0 32 ............................. AAAGCCAGGGAAAAACACGCCAAACCTGGGAA 762053 29 100.0 32 ............................. CGAGCGCTAGTGATGGTGGCTGGATTGTTGGC 761992 29 100.0 32 ............................. GGGTGAGGAACTTCTGGCGGTGGTTTGGGGAG 761931 29 100.0 32 ............................. ATATTTGACGAGATCGATCGCACGCCCGGCGC 761870 29 100.0 32 ............................. CCTGGACTAGCCATCGCGGAGCGGCTGACGCT 761809 29 100.0 32 ............................. CGGCCTTATACGCTCCCTCGGGATGCTTTTAG 761748 29 100.0 32 ............................. TTCAGAGTCCCGAGTCGCCGACATCAGGACAG 761687 29 100.0 32 ............................. GTTCATTGGAACACCTACTCAGATAGATACAA 761626 29 100.0 32 ............................. CACAGCGCCACCAAGAGTCGCTGCGTCCGTAC 761565 29 100.0 32 ............................. CCGCTTGAGACCCATAAATGCGATGACAGCCG 761504 29 100.0 32 ............................. TCTTGGGATCCTGGGGTCGTCGGGGATTCGGT 761443 29 100.0 32 ............................. CTCGCCGTCGCGGCTACTGCGGCCTTGCTCCG 761382 29 100.0 32 ............................. CTTTATGACTGCGCCGGGCGGGAGGAATGACA 761321 29 100.0 33 ............................. TGCGTCAGCTCGTCATAGCACAGCAGCGCCACC 761259 29 100.0 32 ............................. ACGCAGTTCCCGAACGCGCTGCGGTTGCTCGA 761198 29 100.0 32 ............................. AACGCTTTCGCGCGGGTCGCATCAGCCTTGTT 761137 29 100.0 32 ............................. GTGCGCACCATCTCGTCGAGGAACTCGCTGCC 761076 29 100.0 32 ............................. TAAACAGTCGGCAGTGAATCGAAAAAATCGCT 761015 29 100.0 32 ............................. ACGCCCCGTTGGATTCGCCCGAAATGGATTTC 760954 29 100.0 32 ............................. CCGCCTAATTTCTTTCGTGCTCTGGACCTTGC 760893 29 100.0 32 ............................. TCGGCGAGCGCAGCCAGGACTTGCAGTCCTCG 760832 29 100.0 32 ............................. GTGCTGGAGGCAGATGTCTCGCTGCGTGCCGT 760771 29 100.0 32 ............................. GTTCTTTAATGATAAAGACAGGATATCAAAGT 760710 29 100.0 32 ............................. CATAATGGACTGCGAATTAGAGATATAAGACA 760649 29 100.0 32 ............................. CGGTTGGCGTCACTCGCATGATTACTCTGATC 760588 29 100.0 32 ............................. GTCGATCCCGACGTTTTCCCGATTCCGGTGAA 760527 29 100.0 32 ............................. GCGACCCGAGCACGCCCAGAGCCGTTCGGCGT 760466 29 100.0 32 ............................. GCGACCCGCGCCCCATCATCCGGGGATTCAGC 760405 29 100.0 32 ............................. GCCGCCAGGAGCCTCCTGGACGGTCTGGGCGG 760344 29 100.0 32 ............................. GTCTATCGCCAGCGTCCGACCGGATCCACGGT 760283 29 100.0 32 ............................. GTGAATATGCCTACCCACTAAACCACGAACAT 760222 29 100.0 32 ............................. CGCGCCCTGATTTTCGCGCTTCCTATACGTGG 760161 29 100.0 32 ............................. AAGGATCTGGGTCTCGACGACGAGACCTACCG 760100 29 100.0 32 ............................. GTGCTGGAGGCAGATGTCTCGCTGCGTGCCGT 760039 29 100.0 32 ............................. GCCATGAGCACCATTAACCCCGGCTCAGAGGT 759978 29 96.6 32 ............................T TTATTGAATAGGTATTCGACCGCATCAAATAC 759917 29 100.0 32 ............................. TGTTATTGGCTCCACTACGTTTGAAGACCCGG 759856 29 100.0 32 ............................. AATTTGCAGGATCTGACGACCGACATGGCTGA 759795 29 100.0 32 ............................. TGTTATTGGCTCCACTACGTTTGAAGACCCGG 759734 29 100.0 32 ............................. ATCCAGCGGTCGGTATCCGCGCCCTCGTTTGT 759673 29 100.0 32 ............................. GCCTTACTCCAGGATCAGGAAGCGCAGGGTGA 759612 29 100.0 32 ............................. GTATCGAACAGCGCGAACAAGCGCTTTATCGC 759551 29 100.0 32 ............................. ATCTGCTCAAATGCGGTGTCAAGATCCCGGCT 759490 29 100.0 32 ............................. CATGGCTGGACCGGCTGGACGGGCGAAGGCAC 759429 29 100.0 32 ............................. CCCTGCCCACCGTGATACGCAGGCAGGGCCTC 759368 29 100.0 32 ............................. ATCTCGTTCTGCCGCGCGAGCTGTAGGGCGTT 759307 29 100.0 32 ............................. GCCACAGCCATCGCCAGCCACGAGGAACAGGA 759246 29 100.0 32 ............................. TTATCCTGTATCAATCCTTCGGCGGGCGGCTG 759185 29 100.0 32 ............................. GGTGGGGGAATCGCAGAACCCGAGCAGGTGAT 759124 29 100.0 32 ............................. TAGGCATACGGCTGCATGGCCAGATCCGGGGC 759063 29 100.0 32 ............................. GTCTCAGCCTCCTCTTGCGCCCGATCGCGAAT 759002 29 100.0 32 ............................. TCCGGCGACACCGTGACCCAATTTCCCGCTCA 758941 29 100.0 32 ............................. CCCCTGAGACCGCCCAGGCCCAGCAGACGGCT 758880 29 100.0 32 ............................. TGGCTGCGCCGTGCGCTGTAATCCATGTCCGG 758819 29 100.0 32 ............................. CAGGATGTTAGCGCCCTTCATGGCGATGTAGA 758758 29 100.0 32 ............................. TGGCCCGCATTCTTGAGCAGGGCCGCGAACAA 758697 29 100.0 32 ............................. ATGCGTCACGAGGCGACCAATGAGCGAGAAAA 758636 29 100.0 32 ............................. GTCAGATCGATTCAAAAATGAATGAATACCTC 758575 29 100.0 32 ............................. CGATTAGTCGTTGACTAGTGGCCTCACAGATA 758514 29 100.0 32 ............................. AATTGCGCAATCGAATTGCAAACGTAGAGTTG 758453 29 100.0 32 ............................. GCGACCAAGACCGGCACCCGCGCACCGCTCGC 758392 29 100.0 32 ............................. TAGCGTTCTCGTCTGTGCCGACGGCGCATGAC 758331 29 100.0 33 ............................. TCGGTGCCTGGCTCCGGAATCGGGCCAGGGCGC 758269 29 100.0 32 ............................. CGGGGTCATTCTCCAGGATTAGACGCAGGTTG 758208 29 100.0 32 ............................. CACCGGCATTTAGGCCTTGATTTCTGGCTCTT 758147 29 100.0 32 ............................. CCTCTTGACCTTATCCCCAAATCCCAGTCCGA 758086 29 100.0 32 ............................. CTCGATGCCGTTGGAGCCACATCGCGCTATAA 758025 29 100.0 32 ............................. GCTGTGAGGATACGTCCAAGCCGCGTAAGGGG 757964 29 100.0 32 ............................. GCGTCCGGCGTTGCGCGGTGCAAATTGGCGCG 757903 29 100.0 32 ............................. TCCGCAGCGGGCCTCAAACCATTCGTCAGACC 757842 29 100.0 32 ............................. CTCGACGGCACGCAGATCGGCGGCGTGATGTC 757781 29 100.0 32 ............................. GCGCTGGAGGCCGGCTACGGCACCGATGCCGC 757720 29 100.0 32 ............................. CGCGCGTATTTGGCCCTGCGCGGCTCTGACCT 757659 29 100.0 32 ............................. TAAAATCAGGAATAAAAAACGACGCATCACAG 757598 29 100.0 32 ............................. GACGAAATCGCGCATCGTACTATCCTGCCGTC 757537 29 100.0 32 ............................. TCCTGCTGGAAGAGGAAGCGCTTGCTGTCGAG 757476 29 100.0 32 ............................. GCTATGGTCTATTTCTGATGGGTCTGACAATA 757415 29 100.0 32 ............................. TGCTTGTTTTACTTAGAAAAGGTGGTGTACAC 757354 29 100.0 32 ............................. ATCACATTCGAGGCGTTCAAGACCGCGCTGAA 757293 29 100.0 32 ............................. CCCTCTGTTCCAGAATCAGTGACCGCTCTGCA 757232 29 100.0 32 ............................. ACCGCGCTGAATATTCCCGAGTCCAGCACCGA 757171 29 100.0 32 ............................. CCCCATCGATGTGGAGCCGAGTCCCGCGCCGG 757110 29 96.6 32 ............................T TCGGGGTCCGCGTCACGGAGGATCTTGGTTCC 757049 29 100.0 32 ............................. TTCCAGATGTGGCCGACCGTGGGCGCTTGGCG 756988 29 100.0 32 ............................. GATTTTTCTCGATACATCCTCGGCTGGGTGCG 756927 29 100.0 32 ............................. GACACCGAATGGCGCGATCGCGTCGACGCCCA 756866 29 100.0 32 ............................. ATTGGGACCGAAACAAGGCTCATCCAGGAATC 756805 29 93.1 0 ......................C..G... | ========== ====== ====== ====== ============================= ================================= ================== 92 29 99.9 32 CCGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : AATCATCCCGATGATCGAAGACGTATTGTCCGCTGGCGAGATCGAACCGCCAAAGCCGGCCCCCGAGGCGGTCGCGCCGGCTATCGACGATGGGAAACCCTTGGGCGATGCTGGTCATCGTCACTGAGAACGTTCCGCCGCGTCTGCGCGGACGGCTTGCGGTCTGGCTGCTGGAGATCCGCGCCGGGGTCTATATCGGCAATCCGTCGAAGCGGCTGCGCGAGTTCATCTGGAATCAAGTGCTGGAGGGCGTCGAAGATGGCAATGCGGTCATGGCTTGGAACACCAACACGGAGTCGGGCTACGATTTTCTCACCGTCGGCAAGAACCGGCGTGTTCCAGTCGATTTCGACGGTTTGCGGTTGGTCAGTTTCAAGCCGCTCGATGAGCCAAACTGAGTTCTTTGACAATCAAAATCGTGCCCCTTTGAAAAGAGGCATTTTGTTGGTAGATTTCTCAGCGTCTGATTTCTTTTTCTAGATCAGGCAAGTATGGGAAGT # Right flank : TTCTTATGCGCAGCGATTGCCGATACGCGGAAACTGCTAAGATTGCCTGAGTCCGCTTGGGCCTTGGGGTTCAACTGTCTGGAACGCCTTAGAGCGTAGGTTGCTATGGTTTCGATCCCCTTCAGTATCGACACGTTTGTCGGCCGCTGGCGACGCTCGCTCGCCGTCAGCGCGCTCTGCGCCGGCGTTGCGACCGGCGCCAACCTACGAGCCGCCGATGCCACCCTCACGCCTCAGGAAGACGACCAATCCGATCGACAACAGGCCGAGCTGCTGGCCATCCTGGATGAGGCCACGGAGCTGGCCACCAAAAACCGTATCAATGTCGACTATGTCCCCGGCATCATGACCGTGCTGGATCGCGCCGAGATGCTCGCGCTGGGAGTGCGCACGGTGGCGGATGCCCTGACGCTGATCCCCGGCGTCCTGGTCGAGCGAAACGGGACCGGGGAGATGACGCTGTCGATCAGAGGACAGGGAAACAGTACCGGCACTGTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8015-8669 **** Predicted by CRISPRDetect 2.4 *** >NC_013852.1 Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 8015 36 100.0 33 .................................... TTTGAGTTCGATGCTGCTTAAACTGATCGAAAA 8084 36 100.0 33 .................................... TCCATTATAAATATCAGCTCCACAAATAGGGCA 8153 36 100.0 34 .................................... CCTCCTCGGAGGCATCCATAGCCTCTTTTGCAGA 8223 36 100.0 33 .................................... GGAAACAACGATGTCTTCCAGGTCATTGCCGTT 8292 36 100.0 33 .................................... ATATGGTGTGCTCCTTCGCCCAAGATCTTGAGG 8361 36 100.0 32 .................................... ATGAGCGCGAGTGAACATATCCATCACACCCC 8429 36 100.0 31 .................................... CGTGTCCTCTGCCCATTTCTTGAACTCCCGG 8496 36 100.0 34 .................................... CCTTGTTACATCCCGTCCAAGCGTCTTCGTAAAA 8566 36 100.0 33 .................................... CGGGATTGAGCGCTTAATAACGGCCATGACTGG 8635 35 97.2 0 .................................-.. | ========== ====== ====== ====== ==================================== ================================== ================== 10 36 99.7 33 GTTCGGCACTGAGACCCGAATTGAGGGGATTAAGAC # Left flank : CCCAACAGATGCTGATCGCCGCGCTTTCCAAACGCGGCATCGGGGCCAAGACCCGCACCGGTTATGGGTTGTTCGATTTCAATCCGCAGAAACCCGCCGGTCCGGTTTGTGCCTGGGTGAATGAAACGATTGAACGCTTGGCCCAGCAGAACAAGACCAATTCCGAGGAAGTATTGCGCAGCAAGGGGCTGGCGGCTGAATGGGCGGCACTGACGGATGCGGCACTCAAGGCCGAGGCATTGGAGGATATTCGGTCACGCTGGCAGGAAAAAGAACGCGATTGGTGGGATAATCCACCCGGCAAATCCGCCAAGCAGGCGCGTGCGCTTTATGATGAATGATCATAGCTTGAAAGCAAGTTCGGCGTGGATCTTGCATTTCCGTTCCTGAATGTCTATGATCGAGCAGCCGGAAAAACCTGTGGAGATCGTGATGGATATGTGGCGATTGTCGCCGATCAGACGCGAAACGGATAGTGAAAAAAAATTATCCACAGGTGG # Right flank : CCGCGCCCAGTTCGAGAAACGTTTTTTGTAGTTGAACATGCGACTAAATTCGCATCTAAAATCTAAAGCAAAATGACGCATCTCACACTGAACGCAGTTTAAGACCGTGGGTGACAATCCCGTACCCACAATTTAAAAGAGGAGTATTGTCATGGGTGATAATGACTTTGTTACTGGGTTTTTTTAATTAACTGTCCATTTTCTATACCGCTCTCATTTGATTTTTTCGCTGATGGACATTTTGTGACACATCGACCAGATCTGTAGAATCTTCGCCATGTCTGACTACTGCCTTACTGACAAGCAACTCGCGGAACTGCGTGCCGCCCACCGAGGCACGCGCGATAAACGCGAGGCAGATCGGATCAAGGCGGTGGTTCTGCTCGCGACCGGCTGGACAGCTGAGCAAATCGCCGAGGTGCTGCAGATCGACCCGAATACGGTGCGCAATCATTTCAAGCGCTATCGCCAGGATGGCCTGAAATCGCTGGGGCAGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGGCACTGAGACCCGAATTGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 19223-19945 **** Predicted by CRISPRDetect 2.4 *** >NC_013852.1 Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 19223 36 100.0 32 .................................... GCCTCGGTGCCCGCTGTTGAAATAGCGATGGT 19291 36 100.0 33 .................................... GCCGTGTTCAGGTCCGACACGCCAGCGGTGGCC 19360 36 100.0 33 .................................... GGTCTGCGGGGCCTGGCACGTCCCGGCCCTGGC 19429 36 100.0 34 .................................... TCGTTCCCGGCGTCGACCTGGGTCTTGGTGCCCA 19499 36 100.0 32 .................................... ATAGTTAGGTTACGTACATCGGTATTAATTAG 19567 36 100.0 33 .................................... TAGTAGTGGCGACGATTGAGGCGGATTTTCATT 19636 36 100.0 32 .................................... AGATATTTTTTATTGGAATCACATTCTTGCAA 19704 36 100.0 32 .................................... CTACCACTTTCCCATGTACCATTTTCCCATCG 19772 36 100.0 32 .................................... CTTCCTCTTCGTTATCGCTGGGTTGGTATACG 19840 36 100.0 34 .................................... GTTGCAGTAAGCTAGGCAGAACTCTGGGTTCAGC 19910 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ================================== ================== 11 36 99.7 33 GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Left flank : AGCCCTGAAGATGGATGCCGGTTGTCGAAGGAAGCACGTGGGCGCTTCTATCAAGCCTGGGCACAGGCGCGGCAGGACTGGCCCGATTTGCAGGCGACGTTGGAGGATGAACGCGCGGGCACCGTGGTCAGTCTCACGCAGCTGTGCCGTCGTCAGACCGAAGTCTTGCGTCAGGTGCTCAAGCCGGTCATGACCGGTCAATGCAGCCAGGGCGATGAATTCGGACTGGAGTTCTGATCAAATTGCGCGGCAAACCCCGTCCCTCAGGGCGGGGAAGGATAGCGCCTCGATAGGCTTGGCACGGCGACTTTAGTGTCTGTTCACAGTATTTGATCCAAGCGCCAAGTTCGATACTATCAAGCTTGGCCAGCAAGGCCACTCTGCCCCTGATATCTGTTGTATTTTTGATCAAAACTTGACCTAACTTTTTTGTTGACTCAATGTGTATGCTAGAGCTTGTCTATCAGATTGATTTATCAAGCAAAAGTTATCCACAAGGA # Right flank : GAAGAAGGCAAATCGTTGTCAGTGAGTTTACTTTGTGTTTTGATACAGCCTCTCTGACAACAACGAACAGAACAGGCCATGTCGACACAAGAAGAACTCCAAGAACTGCTTGAGCAGAAAAGACTTCTGGACGAGAAGATTGAAAATGCACGTAAAGCCGCGCGCGGACAGGCGATCGAGCAAGCGTTGAGTCTGATCACGACATTCCAATTGACGCCGGAAGACCTGTTTTCCAGCACGAAGAAAGGCAAAGCCAAGTCGAAAGCCCCGCCGAAATATCGTGATCCCGAGACCGGCAAGACCTGGACGGGGAGGGGACCGATCCCGAGTTGGCTCAAGGACAAGAACCGGGACGACTATCTGATCGAGGCGTAAGAGGCGGCCTAAAGCAATCCGGCTTTCGGCTGAGAGGCGATAAGTCTCCGTGCTGATCGAACGTCCACTCGCCTATGCCGCGCTCGGACTCTGCGCGGCTTTGGCGTTGCCTCAATGGAACGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //