Array 1 17812-15529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVL01000004.1 Candidatus Kryptonium thompsoni strain JGI-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17811 30 100.0 36 .............................. TAAATAATCAACTTCCCCACCAAAGACACAAAGAAC 17745 30 100.0 36 .............................. GCTCTCTCAAAATCTTGTTTAAATCTTCTCGTTCTT 17679 30 100.0 36 .............................. AATATGGTTATGTTACGGGTCCAACTTTATTTATTG 17613 30 100.0 37 .............................. ATATTCCCGGTTTGCCCACTTTAACCTCTCAAGGTCC 17546 30 100.0 37 .............................. TTCTTTTAAATAATGCCTCATTTCCCCCAAATTGCGA 17479 30 100.0 36 .............................. TATAATACCCCCACCACCACTCTCCATCAAACTTCC 17413 30 100.0 37 .............................. TCAAGTCCTTCAGATTCAAGATATAATGTGGAATTGT 17346 30 100.0 35 .............................. ATGTTTTTAAAAATCCTTCCGCTTTCGCTTTAAAT 17281 30 100.0 36 .............................. GTATGAATTTTTTCGGTAAGAATTTTCTCAGTAGAA 17215 30 100.0 36 .............................. CTTTTCATTTTGCATTTTCATTCTCCTTTTGATTTA 17149 30 100.0 36 .............................. AGTGGGGTCAATCAAAAGCCAAACATCTTCCTCATT 17083 30 100.0 36 .............................. CCATTTCAACCATCAGCATAATTCTTTCTGCAATCT 17017 30 100.0 36 .............................. TGGAAATAGGTTTTCTGAAACCCCTATTCCGAATAT 16951 30 100.0 36 .............................. TTTTTTTGATTTTTTTAAAAAATCGCAAAAACAACG 16885 30 100.0 36 .............................. ATGCTTTGGAATAAAAAATGCCCACTATCTTTACCG 16819 30 100.0 36 .............................. CAAATTTGGGTTTTAATCGCTCTTTCAAAAATTCTT 16753 30 100.0 36 .............................. AAGTTTTCAATTACAATTTTTCGGTTGCTCTCAAGT 16687 30 100.0 36 .............................. AAACAATTATCGCAAGTATAAGTTTTCTATATCCTT 16621 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 16555 30 100.0 36 .............................. TCCTTATCACTTATGTAAGCAAGATAATCACATTTA 16489 30 100.0 36 .............................. ATATAGGCTTTGGGATAAGTTGTTTTTAAATAATTT 16423 30 100.0 37 .............................. CGTTTTTCTTTCCTTATCCAATCCGCTTCATTTTTGA 16356 30 100.0 36 .............................. ATTGTCCAATTTGCAGTAAGAGAGAAAAATTCCATA 16290 30 100.0 36 .............................. AAGTTTCAGCGTCGAAATACCCTGCAAGCGCGATTC 16224 30 100.0 36 .............................. ACCCTCTGGACAAGCGACATTCTGCAGGCATTTTGC 16158 30 100.0 36 .............................. ATTATTTTGTAGAGTATAGGTCTATTAGTTTTTCCT 16092 30 100.0 36 .............................. TTCTTCTTTTGTCTTAGTATAACTGGTTGGATCAGT 16026 30 100.0 36 .............................. AAGGTAGATATAAGCAAGATGTATTTTTTAGTTGCT 15960 30 100.0 37 .............................. ACTTATCAAATAAATAATAATTCTCACCATCAAAATA 15893 30 100.0 37 .............................. TTATAAAATAAAATTGAATTTTCCCCTGTTTGAATAA 15826 30 100.0 37 .............................. GAAATAAAAAAGATTCCCTTCGTATTCATACACTTTG 15759 30 100.0 37 .............................. TCTCATTTCGCAGGATCACATACAAAGGGTCAAAAAT 15692 30 100.0 36 .............................. GTTCATGAATATCGCGATCGTATCGATTGCGCTTTC 15626 30 100.0 36 .............................. TAGTTCAGAAACGCCATTTCCTCAACCAGCGTGTCA 15560 30 96.7 0 .............................T | TT [15532] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.9 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : ACATATAATGGGAGAGGAAAAATATGAAGGATTTAAAATTTGGTGGTAGGGGGGCTAGAAATGTATTACATAGTTGTTTATGACATAGCGGAAAAGAGGGTGAACAAAGTTTTAAAATTTATGCGAAAGTATTTGAATTGGGTGCAAAATTCGGTATTTGAAGGAGAATTAAGCGATGGACAATTTGAGGAAATGAAAGTAAAATTGAGAAAAATAATAAACTTGAATGAGGATTCGGTTTTAATTTATTCAATGGAGAAAAAATGGGTTGATAGGGAAGTTATAGGTGTGGAAAGAAGTGAGGTAAGTAGAATAATTTAGTCGCGGACAGAGTTTTGGGGCGTTAAATTTAGCGGTTAAATACTTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGACCGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTTTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : CACTTTATCAGAAGGGAAGTATTTTTATGATCAAGACCAAGCGTGTTTATGAGGCCCCTGAACCTGATGACGGTAAGCGTTTCCTGGTGGAGAGATTATGGCCCAGGGGTGTGAAGAAAGAAACTTTGCAAATTGACGCATGGTTGAAAGGAGTAGCTCCAAGCCACAGCTTGCGACTTTGGTATGGGCATGACCCAAAGAAATGGGAAGAATTTAAACGACGCTACTTTGCTGAGTTAGATGGCAAACCCGAGGCATGGCAACCCATCTTAACAGAGGCCCGCAAAGGAAATGTAACCCTTCTGTATAGTGCACGCGATACGGAACATAATAGTGCGGTAGCATTAAAGATTTACTTGGAGAATAAAAAATGATGGGATAACTTCGAAAAAGTTTTCAGAAACCTGCTATTGACTCTAAGCCCAATTTTCGTTAAATTTAAGATAAACATAGCGGAAAATAGTTAAGAAATTTAAACTAAAATTGAGGTTCCACTATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 5723-7142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVL01000039.1 Candidatus Kryptonium thompsoni strain JGI-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5723 30 100.0 36 .............................. AATTAAGAGATAAGGAAATAGAGGGTGAATTAGTGC 5789 30 100.0 36 .............................. AGTGATAAATGTGAGTTTCTGCAGACTTTTTGGGAA 5855 30 100.0 38 .............................. GTATTTGTAATTTATTCCGATTGAATTTAGCGAGACAT 5923 30 100.0 36 .............................. AAATTTGCCCGAATGGATGATTTTGAAGGTTTTATT 5989 30 100.0 36 .............................. TTCGTTCAAACACAACTTCTTTTGGAGTTGGAACAA 6055 30 100.0 36 .............................. ACGAGTTCTCAAATAAACAAGATAGCGCAAGCACGG 6121 30 100.0 35 .............................. AGCGATTAACTAAAGTTAATCGGGAAAATTATTGA 6186 30 100.0 36 .............................. TTACAAAAGCATCAGCATAGTCAGGCGAACGCCCCA 6252 30 100.0 35 .............................. CGTTTTGAATTTCAGCGAGTTCGCTTGCACTTATA 6317 30 100.0 37 .............................. TGATTTGGCTCTATTTTCATCACCATTAAACTTTTCA 6384 30 100.0 37 .............................. GATGAATTGACTTGGGAACATGTAAAATATATTGCAG 6451 30 100.0 36 .............................. TTTCTTTGGGATTTCTTTATATATTGAAGCTTCATA 6517 30 100.0 36 .............................. AGTTAAATTTTTAAAGCCCTTGATTGGGTCAAAGAA 6583 30 100.0 36 .............................. CTTTATAAAAGCGAAAATATAAGTTATCAAATTGGC 6649 30 100.0 36 .............................. GACGATTATTATAAGTTGATTGATTTATTTGACAAT 6715 30 100.0 36 .............................. TTGCTACATCAAACATAATTTCAACGCAAGCGTCGT 6781 30 100.0 35 .............................. AGAAGGATTTCTGGTAGAAATTTTCTCGGTAAGAA 6846 30 100.0 37 .............................. AGCACGAAACTCAAATTGGTGCAACGGCTGAATTGGA 6913 30 100.0 38 .............................. GGTGCCTGTCCCTTTGCATAAGGGTTTGTCTTTAAAGT 6981 30 100.0 36 .............................. TCAGAACATATGTTTCATTATTTTCGGATTTCATTC 7047 30 100.0 36 .............................. AAATTTTCAGGATTGATAACTATAAAATTTGGAAGA 7113 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : AAATTCCTTGATTTTAAATTTTTTCATAGTTTTTTGTGAAATTGTTTTAAATATTTTCGTTTCTAATATATAAATTTTTTAGTTTTTTCCAAAAGATAAAACTTAAAAATTTAAAAGTCAAGAGGGTAGGGTGGTAATTTGGGGTGGGGAGGATAGTGACTATGAGAGGGTGAAAGGGTTGAGGGCGGGAAGTTGTGGGCGCTTGATTTATTATATTTGTTTTGATAAATTTTTATGGTGAGTTGAAGATGTTAAGAAATGAGCACACGGTTTTGAGGAGTTTTAGTTGATGTGAGGATAGCAGTGAAGTAGAATAATTTAGTCGCGGACAGGATTTTGGGGGATTAAGTTTAGCGGTTAAATATTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGGCTGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTTTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : CATGGCAAAAATTACACTGTTTTTGCCGTGTTGGTCAGCCGTTTTGTGGGATAATGGAAATTTTTATCAATCAAAGAAATATACAATTCATGTTGTAGACAGAGTTGGGAGTGGTGATGCTTTTTGTGGCGGGTTAATTTATAGCTTTTTAAAAAATGCCAATGCCAAAGATGCCTTAGAGTTTGCAGTAGCAGCTTCATGTTTAGTTCACTCAATACCGGGAGATTTTGGTTTATTGTCAATTCAAGAAATAGAAGCATTAGCTACTGGTCCCGGAACAGGTCGAATTGTTAGATAATTCTCGGGCTAACAGCTACTTAAGGCTTATAAGTTTTGCGGTTCTGTCAAGTTCAGTGAGCTTCTCTTTGTCTCAGTTCTTTTTGGAGTGGTGGACAGGTTACTTGCTTTTCGTTTAAAAAATTTGTTATATTTAACTTAGCTATGAGTCTTCTCTCATGGCTTCCTCCTTTTAGTTTAACTATCGCCGGGGGAGCAAAACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2315-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVL01000082.1 Candidatus Kryptonium thompsoni strain JGI-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2314 30 100.0 38 .............................. ATGATAACTTCTCTGAAGCACCGTGTTTAAATCTTCTT 2246 30 100.0 35 .............................. AAACTGGGACCTGCATAATGTTCGCATTTATTTAT 2181 30 100.0 37 .............................. TAAATTTTTGGATACCCCCCCTCCATTTGAGAGAGTA 2114 30 100.0 37 .............................. ACTATGTTCTTTTGAAACTCAAAATCTAAAAGAGAAA 2047 30 100.0 36 .............................. TAAATAATTTTGATGAGATGTTCAGGGAGCAATTTA 1981 30 100.0 36 .............................. GAAACTAATTGTTCGCGCTTAATGGGGTCTACTTCC 1915 30 100.0 37 .............................. ATATCTCCTCTGCCCACCAACTTGATTAAAACACGGG 1848 30 100.0 36 .............................. ATTGTTTGTGTTAAAGTTTTATCAATCCTTTCTTTT 1782 30 100.0 35 .............................. TTCCAGACAACCGCACCTTTTCATCAAGGCGTTTA 1717 30 100.0 36 .............................. GTTTATAGGGATTATCAAAAACCCTCGCTGGGATAT 1651 30 100.0 38 .............................. TTAAAACCCTTTTATGTCTTCGCAAGAAATAATAAACT 1583 30 100.0 37 .............................. ATAAAAAAGATTATTGACCCGTTTTTAAATTCAACAT 1516 30 100.0 38 .............................. TTGAGGGCTACATCATAGCCCTGCGACCCAATAATAGT 1448 30 100.0 34 .............................. CAAGAAATAATAAACTTATTTGTACAACTTACGT 1384 30 100.0 37 .............................. ACGATTATAAGCCAAAAGTGCTAAATCGGGATTTTGA 1317 30 100.0 37 .............................. AAGTATTTGTCGCAGGGTCATACGCCTCATTCGTGGA 1250 30 100.0 37 .............................. ATAAATTATTTTATCCCAATATCTTCTTTCAATTTCA 1183 30 100.0 37 .............................. TTTACGCCGAATGACCTCAAAATTCTCTGAAGTTCTT 1116 30 100.0 39 .............................. ACGGGCATTGATTCAAATGGGGAAAGATCCCGCAAATTA 1047 30 100.0 35 .............................. TCGCTTGCAATAGCGGGGATTAACAAATCTTCTAT 982 30 100.0 38 .............................. TCCAATAATGTTTAGCCCCCCACTCTTCTTCTCGTCCT 914 30 100.0 37 .............................. GAAATTAATTGTTCACGCTTAATTGGGTCTACTTCCA 847 30 100.0 37 .............................. GTAAAAACAATTGCTTCCCCAAATTCTTCTTTTGCTT 780 30 100.0 39 .............................. CCTATCATGCCCTAAAATATATCCGCCACTTGTCGTTCT 711 30 100.0 36 .............................. CGGGGCAAAATCAGCAATTGGAGCGAATTTTAACAC 645 30 100.0 38 .............................. TGAAGTCGTTTGACAGCATTTAAAATCTCCTCATCAAT 577 30 100.0 35 .............................. TTGGGAATGAAATAAAAAAGTGTATTGCTCACACC 512 30 100.0 36 .............................. AAAAATATTCTAACTTCTTCACCCCTTACAAGTTTT 446 30 100.0 36 .............................. TTTCATTTATAATCTCATCATTCTTAAATGGCTTTT 380 30 100.0 36 .............................. GGATAAACCGCCCGTGGATGTGTGGGAGCAAATTAT 314 30 100.0 36 .............................. TTATTTGTTTTTGAAAGGGACAATTTACAAGCATTA 248 30 100.0 37 .............................. ACCTTTGCGATGACCAATTTATCCTTTACCCACACAA 181 30 100.0 37 .............................. TTTAAGATTGCTTCTCAATGGGAGCAAAATTTATTTT 114 30 100.0 35 .............................. AATTTGAAGAATTGCAAAATGAATATGAGCAACTC 49 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 100.0 37 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : TAGGGAGGTTGGCGGAAAAATTTGGGGTATGGGTTAACATTTAGGGTCTTGACTTTTGGTGGAAAATTTATTATATTATAGTGTCTAAATTTTGATAGGTTTAAGTTTTATTTTATGGTG # Right flank : CGCTGTTAAGTAGGGACGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 7-4497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVL01000033.1 Candidatus Kryptonium thompsoni strain JGI-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 .............................. AATGAATTTTCAATTGTTTGTGTTAAAGTTTTATCA 73 30 100.0 37 .............................. TAAATTAATTTTACAATATGCTCCGGTAAAAGCCTAT 140 30 100.0 36 .............................. AAGCTATTCACCCCAATGGCGCCCGGTTTTACCTAA 206 30 100.0 37 .............................. TTACAAACCGCAAATTTCGGCGATATCCTCCTCATTA 273 30 100.0 36 .............................. TCCTGCTACGTAAAAATACTTTCTCATTTTGCCTCC 339 30 100.0 36 .............................. ATATCAAGGATATCAACCCTCCGCCCATCCTTCTTT 405 30 100.0 35 .............................. ACTGAAAATCTCGCTCGGAAAATTCTCACCGAAAA 470 30 100.0 38 .............................. ATTAGCTTGAGGGAGTTGTTGCAATGAATTTCTTAAAT 538 30 100.0 36 .............................. TCTTTAAAACTAACAAGCAAATTTTTACCATATTTT 604 30 100.0 37 .............................. CTTTTGAAGTTGCTAAATTATTGGCGTGGAACGACGA 671 30 100.0 35 .............................. TCTCTTGACAAATTGCGTTGAAGTTATTATATTTA 736 30 100.0 36 .............................. CTACAAATATAACAAATTTTATCTTGCTTGTCAAGA 802 30 100.0 36 .............................. AAAATTAAATCTCTGCTTACCAAAAATAAACCAAAT 868 30 100.0 35 .............................. TTTGGTTAATCGGAAAGAGCAAGAAAGGAGAATTT 933 30 100.0 37 .............................. TTCAGCAATCTCTTTCATCTCATCCGTCACTCTTTTA 1000 30 100.0 35 .............................. CTGAATTTCAATCATCTGATCGGTTAATTGCCTTA 1065 30 100.0 36 .............................. GGAGGCAAGCGATTATACTTTTAAAGCTGATGTAAT 1131 30 100.0 36 .............................. TTTAAATCTTCCTGAAACTTTAGCGCCTGAACCTTG 1197 30 100.0 36 .............................. TATAAATTAACCCCAATTTTCTCAAGTTCAAGCTTT 1263 30 100.0 36 .............................. TTATGCATAACACGTTCTCCACAATCACAGTGACCC 1329 30 100.0 37 .............................. GAACCTTTTAAAAACAATAAGTCACCGAGACGATTAT 1396 30 100.0 37 .............................. AATTCTTTTGGAACAAAATAAAAAAGTGTATTGTGCA 1463 30 100.0 37 .............................. ACGCAATTTGTCAAGAGGCAAAAATAAAAGTGTGATT 1530 30 100.0 36 .............................. TCCTGAAACTTTAGCGCCTGAACCTTCGCCTCATCT 1596 30 100.0 37 .............................. AAGATTTGCTTGATGATTTAACTTATCAACTATTGGA 1663 30 100.0 37 .............................. GAGATAGCGCCCCTGTGAATCTTTGAGTTTTCTTAAC 1730 30 100.0 37 .............................. GAAAGTTGAGCGACAAGTTTTATAATTCTGGGTATAA 1797 30 100.0 34 .............................. TAATATATCGTTCCACTTGCAATCCTTACGCCCG 1861 30 100.0 38 .............................. TGAACTCTTCTTTCCCCATTTCATCAGCCCGTAGCTTC 1929 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 1996 30 100.0 36 .............................. TATTTAACATACGCTAATGCAAATGACAACATCCGA 2062 30 100.0 38 .............................. TATGTATATCCGCAATTCCAACACCCATGCAATTCCCT 2130 30 100.0 35 .............................. ATTTTTAGTTTTCAAAATACTTTTTATCCTTTAAA 2195 30 100.0 38 .............................. TTCGATATTGTCAACTCTATCAGACAAATTTTTTATCA 2263 30 100.0 37 .............................. GCACCAATACCCATCCTTTCTCTTTCGGCGGCTTCAC 2330 30 100.0 37 .............................. TTTTGTAATTCCGTATAACTCATATCCTTTCTCTATT 2397 30 100.0 38 .............................. ATGTTTGAATTTATGCAATTTTATTTATGATTTGGAAA 2465 30 100.0 37 .............................. TTGAAAGGGGTTCTATAATTGCGATTAAATTGTAAAA 2532 30 100.0 37 .............................. ATGAGAACAAGCACTGGAAATTCCTTAACATAAATCT 2599 30 100.0 36 .............................. TCATTTTTTCCTCCATTGTTTTGTTTTTGAATTTAA 2665 30 100.0 36 .............................. AAGAGAGACAAAGAAGGGGACTGACGGGATCCCAGA 2731 30 100.0 38 .............................. AGCATAAACGAGCGCCTTGATCCACTCCTCGCCCCTGA 2799 30 100.0 36 .............................. AATATGAACAGCCAAAACAACATGCGGAGGTGAAGG 2865 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 2932 30 100.0 38 .............................. GGTGAAATACCGCCTGAAGCTTCACGACAACAGGCTCG 3000 30 100.0 36 .............................. TAAAATTCTCTTCGCTTCATTTTCGCTTATTTCTAC 3066 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 3134 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 3202 30 100.0 35 .............................. TGGGACAACAGGATCGGCGTCAAGCTGACGAATTC 3267 30 100.0 37 .............................. GTTGGTTTGCGATTCTGAAGGAAGCGAAATCGATAGT 3334 30 100.0 37 .............................. GTTGGTTTGCGATTCTGACGGAAGCGAAATCGATAGT 3401 30 100.0 37 .............................. ACTACAGCCTTGTGCCGGGAGACATTGTCGAAATCGA 3468 30 100.0 34 .............................. TAGATTTTCTTATATTTTACTGCTCCACCAATTA 3532 30 100.0 38 .............................. TAAATTCGCAATTATATGCAACACCATTGGAAATAAAT 3600 30 100.0 37 .............................. CAAATAAATAATCATTCTTCTTCACAACATTGTTAAA 3667 30 100.0 35 .............................. ACCCTCAAGAGCCAGTTCTTTTGTCATTTTAACCA 3732 30 100.0 36 .............................. TATATCTTGCCAAAGCGGTATCTATATTACTTTCAT 3798 30 100.0 37 .............................. AATATTCTACACTGCCACATTTTTCACACCTAACTTC 3865 30 100.0 35 .............................. TTCGTAGCTAACTCTTATCTTGATTCTGTTATTCA 3930 30 100.0 37 .............................. ACACATTATTCCGCCGACGCCGAACGCAAATGTTTGG 3997 30 100.0 37 .............................. CCCTTGATAGGGAAAAATTGGACTGCGTCATTTAATC 4064 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 4132 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 4200 30 100.0 36 .............................. GTTTTTAGAAAGGTTTTGGGTTAGCATTATTATGTC 4266 30 100.0 37 .............................. ATTAAGTATTTCAATTGCTTCAGTCTTACATTAACAA 4333 30 100.0 37 .............................. ATTAAGTATTTCAATTGCTTCAGTCTTACATTAACAA 4400 30 100.0 37 .............................. CTATGATATACAAAAACAACAACTTTACTCTCATTTT 4467 30 86.7 0 ........T..................TTA | A [4492] ========== ====== ====== ====== ============================== ====================================== ================== 68 30 99.7 37 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : ATTTTTG # Right flank : AGGGTAATTTGTGAATTGAATTGGTGAGGGGGGGTTAAAGCATATAGTTTGTGGAAAGCTTTTAATGTTATGGTGAGTAAAAGGGTAAAAAGGTCAGAAAAATTTTTGATAATGTGCATGTAAAGTCAGTTTAAGAAATTTTGTAAGCCGGGTAATTTCAGAGAGTGTAGCTCTTGACTTTTATTTAATTTATTGATATAATTAGCACAGAGAGGAGCCTCCAAAATACTAAGGTGGATTTAAAATGGAATTAAAGTTAAAGTGCAAAACCATAACACCAATGTTTATGGCGGGGGCTGATGGTAAAACTCCTGAGTTAAGGTCTTCAGAGTTTAAGGGGATGATGAGGTGGTGGTGGAGGGCAATAAAGGCGGATGATGATATTGGAAAGTTGAGAAAAGAGGAAGCGGAAATTTTTGGAGGGACTGGGGAAGGAGAGGGCAAAAGCAAGGTGAGGGTGATAGTAAAGCCAGGCTCAATTGACATAGGCAATGATGTTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 13764-13471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVL01000033.1 Candidatus Kryptonium thompsoni strain JGI-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 13763 29 100.0 38 ............................. GATTTAGACAGCTTTCAACAAGATTATTTTCATTTGCG 13696 29 100.0 37 ............................. CGGCTAATCGGGGATACATAGAAATACCAATACTCCG 13630 29 100.0 37 ............................. CTAGGTTAAGCGATAATTAATTTGAATCGTTGAAAAT 13564 29 100.0 36 ............................. CTGTGGTCGCAACTTAAATATCGCATTGGCAAACAA 13499 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 100.0 37 TTTGAATTGAACCTGTGAGGGATTGAAAC # Left flank : AAGTTTGCAAATTATTGCGTAGATATTTACACTGGGTTCAAAATTCTGTTTTTGAGGGCGAGTTAAGTGAGGGGAAATTGGCTGAGTTGAAGTTCAAACTTTCTCAGATAATAGATCCTGAGGTTGATTCTGTGATAATTTACACTTTGTGGGGTAAGTGGAAGGGCAGGGAGGTTATAGGGTTAAATAAGAATCCAGTTGATAGTTTAATTTAGTTTTAGCTATGGGGTTGACCTTGGGTCAACCCTTTTTTATTTTTTTATAATATTCGTTATTACATTTCCGAGAATCGCGTGAAGAAGTTAGCACATTGATTTTTGAATAATTTATTGATTTACAATCAAAAAGTCGCACTCTGACATAAACTAAGACATTTTGTCAGGGAGGTTGGCGGAAAAATTTGGGGTATGGGTTAACATTTAGGCTCTTGACTTTTGGTGGAAAATTTATTATATTATAGTGTCTGAATCTTGGTAGGTTTAAGTTTTATTTTATGGTGG # Right flank : TTTGATTTAAACAGGGATAATGACACTGGCATTCTATTTGAATTGAACACCTAACGCATCTCCCCCTAAATCTCAAATATCCCATACCCCAAAGATGTCTTCGCCCCAATCCCAAACTTCCCTAACGCCTCCTTTAATAACACCTCCGACTTCTGAAGTAAAGAACTATCCTGCGAAATCAAATAAAATTGAAAATGCGTCTTCTCAACAGTCAAAAATTTTATAGGATTTGGATTCTGCCAATCCGCCGGAGGTTGCTTCCCAGAATAATAATCAGGATAATGAGGGTTCATTATATCAATCTTCAAATTTATCGCGTCTTCCCGTAGTGGATATGCATCCATAAAAATAACCCTGCCCACCTTCCCTTGCGTCCCAAAGATTTCTATTAGATCGGAAAATTTTATACCTTCAACTTCAATATCCAAATTTTCGCCATTTTCCAAGGCATTTGATATCCTGTTTACATCTTGACCACTCCTATCAGCAAACTTCAACAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAATTGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //