Array 1 1181234-1180303 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VTJW01000001.1 Listeria monocytogenes strain FSL L7-0323 NODE_1_length_1471583_cov_94.720487, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
   1181233	    29	 100.0	    37	.............................	CTTCTTAGTTTTGCAAGTGTTGTTGTACACGTATTAC	
   1181167	    29	 100.0	    36	.............................	AAATGGTACCACAGAAACAATTGATGTGGGCGTTGG 	
   1181102	    29	 100.0	    36	.............................	GTGATATCCGTTTTACTAACTTCAACATCCCCTTTT 	
   1181037	    29	 100.0	    35	.............................	GTGGCTTCTTTTAAAGCATTGTATTTTTCCGTATT  	
   1180973	    29	  96.6	    35	..............A..............	TGGGAAAGAATAAGATTACCAGCTATTGCCAAAGA  	
   1180909	    29	 100.0	    36	.............................	CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 	
   1180844	    29	  96.6	    36	..............A..............	ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 	
   1180779	    29	  96.6	    34	..............A..............	TTTCCATTTGCACCAGATTCATAAGTTCCGTTGT   	
   1180716	    29	  96.6	    36	..............A..............	TCGATATAACACATATATTTAAAATCATTAAAACTA 	
   1180651	    29	 100.0	    34	.............................	ATTTTTAACATAAAAAATAAGCCTACTCAGCTTT   	
   1180588	    29	  96.6	    36	..................A..........	ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 	
   1180523	    29	 100.0	    35	.............................	TTATGACTTCATCACCTTCCATGTAACACTATTTT  	
   1180459	    29	  96.6	    35	..........................G..	ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT  	
   1180395	    29	  96.6	    35	......T......................	GGAATCACGGACAGTCAGGCGAAGATAACTACACT  	
   1180331	    29	  82.8	     0	......A........CA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        15	    29	  97.3	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATATTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCAGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAATTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  CTCCTCAATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA

# Questionable array : NO	 Score: 5.88
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTAATGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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