Array 1 499354-499086 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUP01000026.1 Pasteurella multocida strain B PmB_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 499353 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 499293 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 499233 28 100.0 92 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTATGTTAACTGCCGTATAGGCAGCTTAGAAAAAGTTGTTATATTAAGCATGAAGAAATGAAAC 499113 28 50.0 0 ..........CGTGTA.GCAGC.TAG.. | ========== ====== ====== ====== ============================ ============================================================================================ ================== 4 28 87.5 52 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAGACTGGTTTAGGTTAACTGCCGTATAGGCAGCTTAGAAACGGCACTGAGTGCGACAATAGAGCCAACTGACGTTAACTGCCGTATAGGCAGCTTAGAAATATTCAAAAAGTTAATCTTTATACTTCTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCAGCTTAGAAAAGAATGTGGCGTTAAGTTAGCAAGACAGCGAT # Right flank : AAGTCTGTTATTGATTTTCTCAAGCGTTATTTCGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:-2.19, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29178-28909 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUP01000024.1 Pasteurella multocida strain B PmB_1769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29177 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 29117 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 29056 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 28996 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 28936 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 70259-70954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUP01000028.1 Pasteurella multocida strain B PmB_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 70259 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 70325 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 70391 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 70457 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 70523 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 70589 36 100.0 30 .................................... AGGTACGGTCTCCTGCTGGTACATATCGAG 70655 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 70721 36 100.0 30 .................................... GTGGCTTTTATGGAATAATCCACAATTGAA 70787 36 100.0 30 .................................... TAACTAGACGTGTATTAAACAGATAAACAA 70853 36 100.0 30 .................................... TTAGTGTTGCTATTTGAGAACACTAAACGA 70919 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //