Array 1 9190-9941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZC010000034.1 Clostridium botulinum C/D strain IZSVe-TV_5792_2_15 NODE_34_length_33049_cov_46.8746_ID_16836, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9190 29 100.0 36 ............................. GAACAATTTGAAGGGGAAACATATTATATAGATATT 9255 29 100.0 37 ............................. CAACCAATAAAAGATACTGTTGCAAAAATATTAGTTG 9321 29 100.0 36 ............................. AAGAGAGAAATTCGAGTATTGCCAAAATCAAAATTA 9386 29 100.0 36 ............................. ATTATTTATTTGGATAATCGTGGTCACAAAATAATA 9451 29 100.0 36 ............................. ATTGTACTTTGATACTAAAAAAATAAATTTTGGAAT 9516 29 100.0 38 ............................. AAAATTAATTGTCTTAGGTAAGCTATTAAACTCTTTTA 9583 29 100.0 38 ............................. TCTTTATCTCGATATCTAAAACAACTAGAAGATGCAAA 9650 29 96.6 38 ........G.................... TTAAATACAGGAAATCTTACAGATATACCACCATTTTG 9717 29 100.0 38 ............................. GGATTAGCTGTATGCATATTTGTAAAAATTTTTGGTGT 9784 29 100.0 35 ............................. GGCTCTAACAATTGCGTCATTGCAGTATATCCAGC 9848 29 100.0 37 ............................. CTTAATGTAACACACTTAATATTTAAATCTTTAGCTA 9914 28 96.6 0 ........................-.... | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.4 37 GTATTAATCAAACTATATTAGTTATAAAT # Left flank : AGATACTATGCCTAAAGTTGTTATATTGGGAGAATATAAATGGGGAAATAACGTATTTCAAGGATTAATAAATAAAGATGGAGTAAATATAGAGGGGCTTAAAGAAGTATTAGAAGAATATAACCATTGGAGAAATAGTAAAATATGGATAGGTGTTAGTAATAGAATATTAAATGAAGAATTTGAAACTGTAAAAGAAGATCTTGAAAAAGAATTTGGAAATTATGATGATATTGTAATAGGAAGTGTTAAAAACGCTTTTGATGGATATTTAGAATACTTAAAAGAAACTATGAAATAAGACTATATAATTTTGCAGTGAACCTCAGGTAATGTTTTTGGTAATTTTTTTAAATTTTATTGTAACCTAGTTGTATCAACGATTAGAGCAATTTATTGCAAAGAATCGTTCACTGCAAAATTGCAGGATTTATGTAGAATTTTTAGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGAGG # Right flank : TTTACAATTTATAAATTTATAAAAAGAAAGGTAATAAAGTATATGAATGACTTAAATAATAAATTAAAACAATATAAAGCAAAATCGGATGACACTACTATATTTAAACACAATAAAGATTTACTTGTGGCTTTAGAACAAGTATTAAATATACATAAAATATCAGAAGAATTGAAATCTTCACTAAGAAAATGTATAAACTATCACGACATTGGAAAAGTCACTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGACATGAGATACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATGAAGATACTTTAAATGAAGTAAAAAATAAATTGAATATAGAAGTGGAAGATATAACATCATACTTAAAGAAAATATGTAGGGGTGGTAGAGAAAATCATAAAAAACTACATGACAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATCAAACTATATTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 12193-14493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZC010000034.1 Clostridium botulinum C/D strain IZSVe-TV_5792_2_15 NODE_34_length_33049_cov_46.8746_ID_16836, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 12193 29 100.0 35 ............................. GCAAAGTGATTTACTGCTGCTACTGCAGCATAAAA 12257 29 100.0 38 ............................. TTTTCTATAAGTACTTGTTCTATTACATCTAATCTTTT 12324 29 100.0 38 ............................. GTAATTTAACACGTTCATTACATCACCTTTTATATCTC 12391 29 100.0 38 ............................. CCAATAAAATCACAATTTAAGCATAGATTTTTGTTTGA 12458 29 100.0 35 ............................. TCGGGACAGGTATTGTTAAGTGATCTTGTAAATGG 12522 29 100.0 37 ............................. ATAGCTCCATCACCTAGCTGGATGCAAGAAAGGCTAT 12588 29 100.0 36 ............................. ATGGTTGGGCTATTTGTTTAGTGCTTACAATTGGAG 12653 29 100.0 37 ............................. TTTGTACTTTTCGATTATGTAATCTACATCTTCCCTA 12719 29 100.0 37 ............................. CATTTTCATGTTATTTTGATGGTCAATAAAAGTTATT 12785 29 100.0 37 ............................. GGTTAAATTATTAACTTTTTCATATTATTTGCTCTTT 12851 29 100.0 36 ............................. TGTTTTCTAATATACTAAGAATTTTTATTAATTCGC 12916 29 100.0 36 ............................. TGAGTGATGTTGTACGTTACACATACGATATCAACA 12981 29 100.0 36 ............................. ATTGTATAAAAGAACAGAGTCTTAGAAAAAACAATA 13046 29 100.0 35 ............................. TTATGGTTAAAGTTCTGTTCTTTTGCATTATATAC 13110 29 100.0 36 ............................. TATTAACATTAAATGATCTTGTTTCTGTTGCTGAAC 13175 29 100.0 38 ............................. TCATGTGGAATTACTTTTATATCATTATCTTGAATAAC 13242 29 100.0 36 ............................. ATGGAGATTAACTCTGCATATATATCGAATACTTTC 13307 29 100.0 37 ............................. GTTACTATGTATGGATTAAATATAAACTTAAATATAC 13373 29 100.0 35 ............................. AATGAATCTACTATTGTTTCTGCTGTTTTTTTCCC 13437 29 100.0 37 ............................. TTTGAACCATATCGTTAAAGTTTTTAATTACTGTTTT 13503 29 100.0 37 ............................. TGAGTTAATACGAGCAAATTTTAAAAGTGTCCCTCCC 13569 29 100.0 36 ............................. TATCTCATCCTCCATTAATAAATAATTTTTAATATT 13634 29 100.0 36 ............................. ATAGTAATAAGAAATAAATTAATAGAAATGGTTTTA 13699 29 100.0 36 ............................. TTTCTTCTAATTGATTAATGTGTTCATACATTTCTT 13764 29 100.0 36 ............................. TCGTTGTCACCTTACGGTAACAAGCGATATTTGAAT 13829 29 100.0 38 ............................. GAATTGGAAGGAACAGAAAAGCAAATAGCTTGGGCTAA 13896 29 100.0 36 ............................. AAAGTAATTACTACTCCTTTATCTATTTCCTTTTCT 13961 29 100.0 36 ............................. GATGGAAGAGATTTATTCAAGAAAGATATAATTAAA 14026 29 100.0 37 ............................. TATCAAGTATTTTAAAATCTAATGTACTATACTTTCC 14092 29 100.0 36 ............................. GTCATACTTGATACAATTTCATTTAAACCGCTTGGG 14157 29 100.0 36 ............................. ATGTCGAGGTTTATGATTATCAACATGATATTGTTC 14222 29 100.0 36 ............................. GATGAATTTTTGGATTTAAGAGTAGCAGAAGAAGGA 14287 29 100.0 36 ............................. AGGAACAAGACAAGTTGCTTCACAGTACTAAATAAA 14352 29 100.0 36 ............................. CTTGTTTTTTGCAACTTATCTTCAGACTTATCATTA 14417 29 96.6 20 ............................G AAAAAAATAGGTAATGGTAT Deletion [14466] 14466 28 82.8 0 ........TT......T....-......A | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 99.4 36 GTATTAATAAAACTATATTAGTTATAAAC # Left flank : TATAATGAATATAAGGGACAAATACAGTTTATAATTGACAGCATTAGAGTGGGGTATTACAATCAAAATGCTTCAGAAGAAATGTTAAGTGATAACAATACAGTACAAGTATTGCCAAATAGTTTATTAAGTAAATTTGCTGAATTAAGAGAAGAAAAAAGATATGTAGAGGCTAATGAATTATTCGTAAATGCCAAAAAATATATAGCTAAATATGATAATAACTTTAAAATTTATACAACAGATTATGTTTATGATTTTAAGGGATTAATCATAGGAGAGATGGATATAAATAATCAAATGTTATAACAATTTTGCAGTAAACCTCTGGTAGTGTTTTGGGCAAATTTTTAAAATTATATTATAACGTAGTTATATCAATGGTTATAGAGATTTAATATGAAAAATCGCTTACTGCAAAACTTAATGGTTTTGTATTTAAAGTAGGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGGG # Right flank : ATCTGAATAAAGTTTATATAAATTGTCAAATATATAAGTATTCGGTTTCATTAGTTTGAAATAAAAAAAATTTTTAATGAAAGGAATACTTATGGATTTTAATTTAGAAAAATTTAAAACACAAGGTATTAAAGTAAACTATTATTATGTATGTAAAAGAAAACTTTGGTTGTTTTCAAAAGGAATAGCTTTAGAATCTAGTAATGATAGAGTAATGAGTGGTAAAATTATTCATGAAAACTCTTATAATAGGAAAAAGAATAAGGAAGTTTTGATAGATAATCTATTAAGATTAGATATTATGGACAAGGATTATGTAAGAGAAGTAAAGATAACAAGTAAAATGCCATTACCTGATAGAATGCAACTTCTATATTATCTTTTTTATTTAAAAAATATGGGTATAAATAAAAAAGGATCTATTAATTATGTAAAAGAAAAACAGACAGAAGAAATAGAACTAACCGATTCTATGGAAGAAAAAATTAAAAATACATTAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAAAACTATATTAGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 109-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZC010000051.1 Clostridium botulinum C/D strain IZSVe-TV_5792_2_15 NODE_51_length_21709_cov_17.7418_ID_16870, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 109 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 177 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 244 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 311 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 376 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 442 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : AAATATTACTAGAAAGGTGAATTTCCAGTAATATTTTCTGATACTAATTAGAAGTACACAAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTCCG # Right flank : TAATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 3422-5295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZC010000051.1 Clostridium botulinum C/D strain IZSVe-TV_5792_2_15 NODE_51_length_21709_cov_17.7418_ID_16870, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3422 29 100.0 38 ............................. ATACTTCTCTGTAAATCTCCATTTACAAGTGCTATAGA 3489 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 3556 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 3621 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 3688 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 3753 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 3817 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 3883 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 3948 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 4015 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 4080 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 4145 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 4214 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 4280 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 4345 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 4410 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 4476 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 4542 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 4608 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 4674 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 4740 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 4805 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 4871 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 4938 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 5004 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 5069 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 5135 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 5202 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 5267 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 6407-6962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZC010000051.1 Clostridium botulinum C/D strain IZSVe-TV_5792_2_15 NODE_51_length_21709_cov_17.7418_ID_16870, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6407 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 6472 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 6538 30 100.0 36 .............................. CAACAAAAAAAATGCACTAAAAAATGCACTACTGAA 6604 30 100.0 36 .............................. ATGAATTATAGAGTTTAGTATAATCACTATCAGATG 6670 30 100.0 37 .............................. AAGATAGTACTTTTATAAACTGCTTTAGATAATTTTA 6737 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 6803 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 6869 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 6933 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8582-7959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZC010000075.1 Clostridium botulinum C/D strain IZSVe-TV_5792_2_15 NODE_75_length_8729_cov_17.9479_ID_16918, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 8581 29 100.0 37 ............................. GTTTAAATTTAATAAAAATTCTGGTTGTGTAAAGGTA 8515 29 100.0 36 ............................. TAAAACAGTTGGAATGACAATCGTTACTTCCGCTAT 8450 29 100.0 36 ............................. GCTCAGGGTCAACTCAGCAAGTTGCTAGAAGGTGCA 8385 29 100.0 36 ............................. AATTACTTTTAATAATAACGGTGATATAAAAGACAG 8320 29 100.0 40 ............................. CTAACCATTCTGGTCCCAAATCTAACATTGATTTAGATAC 8251 29 100.0 37 ............................. CAAAATTATTATCACCTATTTCTATAACACCTTCTGA 8185 29 100.0 38 ............................. TTTATTACCACTTAATGCTATTCTTACTTTATCTCCAA 8118 29 100.0 37 ............................. TGAACTTGAATAAGTAAGAATGTACTAGATGCTACAA 8052 29 100.0 36 ............................. CTTATTAGTTGTTTTAAATGCTTTAACGTGTACCAC 7987 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 99.7 37 CTTTATAACTAACATAGTTCTATTAATAC # Left flank : CAAAATCAGGTACTTCAAAATTTCTCATTTAGATTCCTCCTAAATTCTTATAAGTATATTATTCCAAACTAACCAATTTTCCATACAAAAAAGATGTAGGTTAATTTGTTTTTACACAAATCAACCTACATCCCCAAGTTTTATACA # Right flank : CCCATTTTCCTTCTATTATCTTCATAATACTATATAACTTCATATCCTTTATAACCTTTTTAACATAAAATCACTAAATTTTGCAGTGAGCCATTTTTTATAGTAAATCTATACAAACGTTGATATAAGTAGTTTACAAGCTTGTTTTAATTATTTAGCAAAAACACTACTAGAGGTTCACTGCAAAATCAATACATTATAGTTACATAGTTTCTTTTAAATATTCTAAATATCCATCAAAAGCATTCTTTACACTACCTATTACAACATCATCACAATCCTTAAATGCTTCTTCAAGATCCTCTTTCACATTTTCAAAGTTTTTATTTAAAATTCTATTACTAACGCCTATCCAAATCTTACTATTTCTAAAATTATCATATTCCTCAATTACTTCCTCAAGACCTTTTATATTTACTCCATCTTTATTTATCAATCCTTGAAATACATTATTTCCCCATTTGTATTCACCCAATATAACAACTTTAGGCATAGTATCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAACTAACATAGTTCTATTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //