Array 1 435519-434453 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAJ01000003.1 Pectobacterium odoriferum strain Q47 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 435518 29 100.0 32 ............................. CCAATTGCACATGCGCTTGCGGGTGATCCCAA 435457 29 100.0 32 ............................. TCGGTTAACAGTCTCGCAATCGGGTTAGGGTA 435396 29 100.0 32 ............................. GTGAAAATAAATGTTGTCATATAGTCAGTTTT 435335 29 100.0 32 ............................. AATTTAACTTCCCTTCCCACAACGCGATTACT 435274 29 100.0 32 ............................. GATAAATATCGAGATCTGACACGAAAATATCC 435213 29 100.0 32 ............................. AATCACAGAGCGAACGGTAACAGAGCGTGTTA 435152 29 100.0 32 ............................. TTAACCTGCAATCCATCAACCTCAATGTAAAA 435091 29 100.0 32 ............................. ATTGCCGATCGCAGCCTGAACAGCACGCCAGG 435030 29 100.0 32 ............................. GGACGTGTTTATCGAAGACGGAACAGTTTCAT 434969 29 100.0 32 ............................. GGGCAGGTGCGCATGCGCACTGTGTTTGAACA 434908 29 100.0 32 ............................. CAGGTCGCGGAAAACGGCCTTAAATTCAGCAT 434847 29 100.0 32 ............................. CCCCAATCGCTTGAGTCGCCTCCCCCTCCCCC 434786 29 100.0 32 ............................. TTTGTCTTTGTAAAGTTCATGCCTTAACAAGC 434725 29 100.0 32 ............................. AATTCCCATCAATGTTAAAGAGCGAGGCACTT 434664 29 100.0 32 ............................. CGCATTCAATCCACGTCCCTGCGCTAAATTTG 434603 29 100.0 32 ............................. CTGCATCTGTTGTCGCGTGAAAAAGACGTTGC 434542 29 100.0 32 ............................. AACTGATCGAGCGCCGCTGTTTCGCTATACAT 434481 29 93.1 0 .........................C.T. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCAGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGTATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTTGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGAGCAAATCCCGCTTTGGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCGTACGTTACTGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGCCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGAAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 217598-216851 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAJ01000004.1 Pectobacterium odoriferum strain Q47 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 217597 28 100.0 32 ............................ TTCCCGGTATCAAGTACCAGCCATGTCCTGTC 217537 28 100.0 32 ............................ TGTGCGCTCCATGATGATTTCTGGTGTCATGC 217477 28 100.0 32 ............................ AAGAGCTGGGTGATTCAGCCACAGGAAAAACT 217417 28 100.0 32 ............................ ACCAGCTTAGACAGGTCAGCACACTTGTCGCG 217357 28 100.0 32 ............................ CAGCGCTTCTGAAATAAGGTTATTTTCATCAC 217297 28 100.0 32 ............................ ATGCGACAGGGCTGACGATTTCATTAAGCGGA 217237 28 100.0 32 ............................ ATATTCGTCGCTACCTTCAAAAGCTGCATAGC 217177 28 100.0 32 ............................ AAAGAAAACAGCAACATTAAAAGCAAAGCAAC 217117 28 100.0 32 ............................ GCGCATACCCACACGAACACCGGCACACCGCT 217057 28 100.0 32 ............................ GGGCAGCACCTGATATTCACCCGTTATAGCAG 216997 28 100.0 32 ............................ TCCCGCTGGCGCTCACGTTGTGCTCTTTTACG 216937 28 100.0 32 ............................ TGCAAATGTCAACTATCGGCGGAATGGAAGGG 216877 27 71.4 0 A..........T.C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCATCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACTCCTGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTGACCCTTTTTTTACGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGTCAAAAAAGTCATATTTTCTTTAATAATCTGGTGGTTAGCGTAAAAATTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 226174-226861 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAJ01000004.1 Pectobacterium odoriferum strain Q47 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 226174 28 100.0 32 ............................ AGTCTGGCAACTCTCCGGTAATTCCGGATGGT 226234 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 226294 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 226354 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 226414 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 226474 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 226534 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 226594 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 226654 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACTGGGATAG 226714 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 226774 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 226834 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAATACAGCGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGTTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //