Array 1 66645-66811 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKQC01000099.1 Brevibacillus laterosporus strain NRS590 Contig_142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 66645 32 100.0 34 ................................ CTCTAACAATGGGTTATACTGTTGACTCTCTTTC 66711 32 100.0 37 ................................ AAAAACACCCCTTTAACTAACAATCGGTAATTTTAGC 66780 32 96.9 0 .....................C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 99.0 36 ATCGCTCCTTACACGGGAGCGTGGATTGAAAC # Left flank : CGTATGAATGGATTTATTTCGGCTCATTTTGCTGAAAAATCAAATTTTACTGAAGGTGATTTGAATCTATTATGGGAAGCAATCGTTCATATGTTTGAACATGATAGATCAGCTTCAAGAGGTGAAATGGTTGTACGTAAACTAATCATCTTCGAACATGATTCCAAGCTTGGAAGAGCCCCAGCCCATCAATTATTTAATCGAATAGCAATCAAAAAGGTTCAGGAAAAAGACCAACCAGCTCGTTCTTATCAAGATTATATGATAGAAATTGACAGCACAAACCTTCCATATGGTGTCTCAATTATTGAAAAATACTGATGCAACAATTAGGGTGCGAAACTCTAGCTCACATAAATCTTCAGGGGGATTCGCATTCGCATATTAGCAAAGGATTTATTCAACGATTACGCTAGATTCGAAAAGTATACTAGTTTATTATCGTGGTTCGCAATTAATGGATTATGAGACTTTCTAGTATGCTATTTTTCCCTCATACT # Right flank : CGGGAATGGATGCTTGCGTCTTTGACAACAACATAGTGGTCGCTCTTACAAATAAGCCTTCTAAAAATAGGGAAAGGCTTATTTGGCTTGGCCAACTGAAAATCCCTTGGAATTATCTTCAGAATGTGAATGAGTCATTAAGATTATTAATTCGCCCCAGAGGTGGGATATGCTGATAGAAAATGGATTGCACATCTGCTGTATCCTCGAATATAACCAGGATGTCATAAAAGTAAGTGCTATTAGAGAAAACGTCGGATAGCCCACTTTTTGAGCCTCAGAAGGTTATGTCATTTGATGAATGATATGGTTAGCTTGTACAAAAACACAAATTGCATAACGTATGAAGCACATTTATATATAAAAAGCCCTAGTCTTAACTAGGGCAGGTTCCAGTTACCAGTCAGGGTCTACACTACTTTGAGTAACTGAATAGTGACTCGTAACTGCTGAAGGAATGATACTTATGGCTAAAGCTAACGTAAAAACTGTAACTGACA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCTTACACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 70465-71322 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKQC01000099.1 Brevibacillus laterosporus strain NRS590 Contig_142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================ ================== 70465 31 87.5 33 ...........C..-..TT............. CAAGGTCAGCGTGTAATCCGTATCTACGGAAAC 70529 32 87.5 33 .........A...AG......G.......... TACGCAAACCAATACGATTACAGCCAGTATTTT 70594 32 84.4 18 ..T....T...C..G....T............ CATCATATTTAACACTAT C,G,C [70618,70621,70626] Deletion [70644] 70647 32 90.6 33 ...........C..GA................ TTATGGGCCATGTAAATGTACTCCCTGACTACA 70712 32 87.5 27 ..........GC..G..............T.. AAGTATCTGGGGAAAGTGGCCAATAGA T,T [70737,70741] 70773 32 93.8 34 ...................T.C.......... ACAAATGGTCGTGCATGCCTTAATCCGTAGTTAG 70839 32 90.6 92 .......T...........T.C.......... TAGTTTACAATTTGTAAAGTAGAACTTACTTGAAATCGCTCCTTAGCGTGGATTGAAACGGCTAATTTGGTCTTAGTCATCCCACAGCTTAA 70963 31 90.6 96 .....A..............-C.......... ACTGGTGTAGGAACTAGTGAACACTCTTCTTTAATCACTCCTTACTGAAGTGCGGATTGAAACGACTCCGGTGCAATGGTTCAAAAGTTGGCAGAG 71090 32 87.5 35 ..T.T......C..G................. GCATCGTTACTTTCTCCATTTTTTACGCGCCTGGC 71157 32 87.5 35 ..........GC..G....T............ TTGAAGTGGATCTCACACAATCGATGTCCGTTAAC 71224 32 90.6 35 ..........GC..G................. TCGATCCAGACAACAAGCTCAGAGGCTCCAGTGAT 71291 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================================================================ ================== 12 32 89.8 43 ATCGCTCCTTATACAGGAGCGTGGATTGAAAC # Left flank : TTGTTTTACATTATGAAAGCCTATGAAAATTCTAGGGAGAAAAAGCCATTTAAGAGTGATTTGATATCAGCTTTATTAATCATAGTAGTTGTTCCCATTGCTTTTCTAATTGTTATTAGCCAACGGTAAGAGCCATCATGTAATCAAGCCTTCACAAGCGTCCGAACCCCAAAATTTGGGCGTTTTTTTGATACTAAAGATACGATATCGCTCATTTTTCATCCAAGTTTTTGACATGATGGCCAATAAACAGATAGAAAAAGTTCGCCTTTTTGAACAGTAATATCCAGGAGTTAATCAGGCGGGCTGTTTCTCGTCAAAACCTCCATTTACTCGTCAAAGGATTCGACAAGGATAAATGACGAATTATCCTTTGAGAGGTGATAGCTGTTGAAGTTAAGGGAGGGGGGATAGCATAACTAAAAGTATGTCAGATTTTCATCGTGGTTCGCAATTAATGGATTATGAGACCTTCTAGTATGCTGTTTTTTCCTGATACT # Right flank : CGGGAATGGATGCTTGCGTCTTTGACAACAACATAGTGGTCGCTCTTACAAATAAGCCTTCTAAAAATAGGGAAAGGCTTATTTGGCTTGGCCAGCCAAAAGAATTATCTAATCAGCATTAAAAATCATATCTGTAAGGAGGGGGACAAGGTATCATCAATAACCCTAACGAAAATAAATATTTGTAATAAATGGAAGGAATTACCATATAACTCTAGAATAAGTTCCTTATGTATAAAATATTATAACAGTGTTAGGAGGATTTAAAAATGTTTAAACGTAATTCCATCTTCCTTTCAGTCATCTTGTCACTATCGATTTTATCTTCTTCCCTAGTATTAAGTCCTGCAACCATTTCAGCNNNNNNNNNNAGATCATGGAGCTATACCGATCAATATTACGAAAGATCAAAAAGGTATTCTTCCTGTAATCTGGGCTATTGCAGCGATAGTAACAGCAGGAGCTACCACTTATACTGTCTATACCGTTCATGAAAGAAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:3, 4:0.49, 5:-1.5, 6:0.25, 7:-1.02, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCTTATACAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 72509-72739 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKQC01000099.1 Brevibacillus laterosporus strain NRS590 Contig_142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 72509 32 90.6 35 ..G.......G...G................. TCCATGCCATCTGGCGAGTAATATGCGAATAGTGG 72576 32 100.0 34 ................................ CACATGCGCCAGTGAACCAGCTCATGCAACAAAG 72642 32 96.9 34 .............G.................. TTTGCTCCTATTACCCATGGCATTACGGAACAGG 72708 32 78.1 0 .....................C.A...TTTTG | ========== ====== ====== ====== ================================ =================================== ================== 4 32 91.4 35 ATCGCTCCTTACACAGGAGCGTGGATTGAAAC # Left flank : GCCTTCTACATGCTAGAAACTACAAGTTTGCAGAAGTGCAATCACAAGATTGTAAAGAAGCTGGAGGCATTCCAGAGGTAAGAAATACCTGGAGTGGATTAGGATTTGTAATTACATGTAAAACAAAAGATTTAACATAAATACTATTTACCATAGAATCTTTATACAAGGGTGTAGCGCATGCTACATCTTTTTTTATTATCTAAAATCAAAATCAGAAAGGATAATCTTACTAATTGCATTGGCCAATGGGGACATGGACAAAAATAACTCTGCTAGCAACATGACAGAGGAGCCCTTTCTCGTCAAAATCTCCATTTACTCGTCAAAGGATTCGACAAGGATAAATGACGAATTATTCTTGGAGGTGATAGCACTGAAATTAAGGTGCAAATGTTAATAGAGGGGGGATAGCAAAACTAAAAGTATGTTAGTTTCTTATTCTGGTTCGCAATTAATAGATTTTGAGACCTTCCAGTATGATACTTTTTCCTGATAGT # Right flank : GTAAGTCATCACAAATAAGCCTTCCTTTGGTATTATCCCCTTTGAGTAGACAGTGTAAAAAGCCCGCCCACCTGACGGTGGGTGGTACACTCTACTTGGAGGGGATTTTCCTATGGCTAAAAAAGGTCAAAAATTCAAACGTTATTCCGAGGAGTTTAAGCTGAAGGCTGTAAATTTGTATCAAGAAAGAGGGATGTCCTATAAAGCGATAACTAAAGCATTAGGAATACCAAGTTCAACTCAGGTTAAGCAGTGGGTTCGAAAGTTCAATAGCGGAGAAGGGGTTATGGATAAACGAGGGAAGAGCCGTTCTTGTGACCACCCTTTTATTGGTCGTCCACGCACCAAATTTGCTACTGTGGAAGAAGAAAGAGATTATCTTAAAGTGCAGGTAGAATACCTAAAAAAGCGCAATCCGAATCTGATCTGGGGGGAAGATATGGAAAGTAAATCGGTTTTTAATCATAAATGAGCTGCGTAAAAAATATCCCCTTACTTGG # Questionable array : NO Score: 6.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCTTACACAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //