Array 1 10-363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDX01000102.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10 47 100.0 29 ............................................... TCTTTACTCAGCAGGCCTACGGCCGCTTC 86 47 100.0 30 ............................................... TTCTTAACCGATTTAACGAAAGGGTTGCAG 163 47 100.0 30 ............................................... AAACCGTTCAAATACCTACGCAATTGCGTA 240 47 100.0 30 ............................................... TGTTATTCTAAATTCGACTGTCAACGTGCC 317 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : AGAAATAATG # Right flank : CAGATTTTACATAACATATTGTCCTTCAATAAGTTAAGAGTAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 304-1116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDX01000101.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 304 47 93.6 30 ...A......A.............................G...... TTGATAAATGCGAGTACGCAAACAAACTGT 381 47 100.0 30 ............................................... AAGCCGGAAGAAAAACAGGCTATCACTTAC 458 47 100.0 30 ............................................... AACCTTGTCTATTATTACCAATAGCGTTAA 535 47 100.0 30 ............................................... ATGGATTTCGTAACAAAAAACAGAAATAAT 612 47 100.0 29 ............................................... AAGTAGAAGAAGCAGTGCCAGCTGAACCA 688 47 100.0 30 ............................................... TAGCTGCTAAATACAGTAATGAAACACTTG 765 47 100.0 30 ............................................... CTTCTCGGTACGGTAATATCCCCGTTTGAC 842 47 100.0 29 ............................................... TCCAAAGATCTTTGTTCCAGTTAGCATAT 918 47 100.0 29 ............................................... CACGTAATCCAAAAGCGGTGTAGCGTGGT 994 47 100.0 29 ............................................... TCTTTACTCAGCAGGCCTACGGCCGCTTC 1070 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 99.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : CCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : TTCTTAACCGATTTAACGAAAGGGTTGCAGGTTGTGATTTGCTTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 620-1356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDX01000100.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 620 47 93.6 30 ...A......A.............................G...... TTGATAAATGCGAGTACGCAAACAAACTGT 697 47 100.0 30 ............................................... AAGCCGGAAGAAAAACAGGCTATCACTTAC 774 47 100.0 30 ............................................... AACCTTGTCTATTATTACCAATAGCGTTAA 851 47 100.0 30 ............................................... ATGGATTTCGTAACAAAAAACAGAAATAAT 928 47 100.0 29 ............................................... AAGTAGAAGAAGCAGTGCCAGCTGAACCA 1004 47 100.0 30 ............................................... TAGCTGCTAAATACAGTAATGAAACACTTG 1081 47 100.0 30 ............................................... CTTCTCGGTACGGTAATATCCCCGTTTGAC 1158 47 100.0 29 ............................................... TCCAAAGATCTTTGTTCCAGTTAGCATAT 1234 47 100.0 29 ............................................... CACGTAATCCAAAAGCGGTGTAGCGTGGT 1310 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 99.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCTAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGCGTGTTAAATCAAGTAATAGGAAGAGAGGAAACAAAAGGAGAAAAAGAATTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCCAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : TCTTTACTCAGCAGGCCTACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1707-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDX01000061.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1706 35 100.0 33 ................................... ATCCTTTGTTTATTATAATTTCGATTATTAACC 1638 35 100.0 33 ................................... TTATTTCTGATTTTGCTTCTTGCTCTGACAATC 1570 35 100.0 37 ................................... TATTCTTTGATGCCGTGATTTATCACACGATTAAACC 1498 35 100.0 36 ................................... AGTAAAAAATTCCTAAAAACAGAACTATGGAAAATT 1427 35 100.0 35 ................................... AAATCTCGGAAGAACTTATTACAGAGTTGTCAGTC 1357 35 100.0 37 ................................... CCACGATTTATGTCGAGGTCGTAAAGAGAGAAGGAAT 1285 35 100.0 39 ................................... AAAGGCGAAGAGACAATTGTAAAGTCCTCTTCCTTTTAA 1211 35 100.0 34 ................................... ACTTACTGTGCAATGGCGGCGAAGCACAAAACCT 1142 35 100.0 34 ................................... ACGGAATTTTTATGATAGACAATGCTCCAAAAGT 1073 35 100.0 37 ................................... TAAAAAATTAACTCCGTATTTGGGAAATGCCAAAACG 1001 35 100.0 34 ................................... AACCTTATCCAAGAAAAAAGAAATCGCTGCTGGT 932 35 100.0 33 ................................... AAATATGGCGCTGTTTTGGGTCTCGAAAAAAGA 864 35 100.0 37 ................................... TTCCTATTTCGGCAACGTTCAATTGAAGTGGGAACTT 792 35 100.0 36 ................................... AGAAAATAAGGAGCGAATTGCAGAGGTTGGCTGAAA 721 35 100.0 36 ................................... ATATTTTGACGTGGATTTGGAATGCAATCATATGGA 650 35 100.0 38 ................................... GCAGCTTAATAGAAAATGTGAATGATCTTGGTTTTGAT 577 35 100.0 35 ................................... TTCAGTCGGTATCAAATGGAGATTAAAATCCAAAT 507 35 100.0 36 ................................... TTTGCGAGACGAGATAAAGAAATTTATTAATCAGGT 436 35 100.0 35 ................................... TACAGGGATAAATTTTGATTATGAATTGCCGAAAT 366 35 100.0 39 ................................... ATTATGCGAGACCGGTGGTGGGCAATTAAAGAAAAACTT 292 35 100.0 34 ................................... TTGAAGAAATCAAGTCAATTCTCTTCTAAATTTC 223 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 22 35 100.0 36 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //