Array 1 432989-431130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYJ01000007.1 Dactylosporangium aurantiacum strain NRRL B-8018 contig7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 432988 29 96.6 32 ............................G CCATCGCCGCCCACCCCGCCGGCGCCAACGTC 432927 29 100.0 32 ............................. GGCCCGAGCGCGTCGAGAATCCAACGGGGTGT 432866 29 100.0 32 ............................. GTGCTCCCCGGGGCCACCATCGACCACGTGTT 432805 29 100.0 32 ............................. TGGGTGGCTCTGGGATGACCGCCGTTCCGCTC 432744 29 96.6 32 ............................G GAGACCCAGGCGCCGGCCGTGGCACCGTTCCC 432683 29 96.6 32 ............................G TCTCGGCGCGTCGGGCACCCCAAAACCGGTCA 432622 29 100.0 32 ............................. GCGTCGAGCACGGCGGCGCGCTCCCTGTCCGT 432561 29 96.6 32 ............................G ACGTGGCGTGGCGGCGCGAGGCCGGCTCATGC 432500 29 100.0 32 ............................. TACCTCACGCCGGACTGGCCGAGCAGCGTCTT 432439 29 96.6 32 ............................G AGCCTGGGGCAGGTGGCCTTCGAGGCGTACCG 432378 29 100.0 32 ............................. TGATAGATGCCCTCGATGCGCACCCTAATCTG 432317 29 100.0 32 ............................. TTCTGCCACCGTCGAGAGTGGACCGTTTACAC 432256 29 100.0 32 ............................. CAGTGGATCGCCACGCCCTCGCTGCCCGGGTA 432195 29 96.6 33 ...............A............. ACGTACATCACCGCAGGGTTCACACCCGGAAGC 432133 29 93.1 32 .........C..................G CTGTCCGGGATCGTGGCGCCGGGCTGGACGGA 432072 29 96.6 32 ............................T GGAGTGCGGCTATGACCATCCACCGCGCGCTC 432011 29 100.0 32 ............................. TGCGGATACGCACCGAACTGCGTGCCACCCTC 431950 29 96.6 32 ............................G ATGATGTCGAACAGGTCGCCGAGCAGGCCGAG 431889 29 100.0 31 ............................. CGGAGTACGTCGGTTCCTGCCTGATCAACTA T [431862] 431828 29 93.1 32 ..........T.................G GGAACGCCCACGCCGGGTGCTTACCCACCGTC 431767 29 86.2 31 ...G..T.....T....A........... GGCCGTACACGCGGTCGAGCTGCCCGATCGA A,A [431740,431749] 431705 28 82.8 32 .......T.....AT......-......G CAGAGGGAGAGCCGATAGTGACAGATCTTGAG 431645 29 96.6 32 ...T......................... TCGATGATGTTGCCGAGCGGGCCGGCACCGAC 431584 29 89.7 32 ..............T......AG...... CTGGAGCCGATCGCCCGGATCGTGCTCGGCTC 431523 29 93.1 32 ........................GC... GACGACAAGATCGTGCTCGCTCAGAACGTCGG 431462 29 82.8 32 ..........T..T.........GG...T TTCCACGCCAAGCTGCTCCAGGGCGGTGAGGT 431401 29 100.0 32 ............................. GGCACGCCGCGGGTGTCGGTGATCAGCGTCTT 431340 29 93.1 32 ...T..............A.......... CGCTCCGTCATGCGGATCAGCCCGCCGCCGAA 431279 29 96.6 31 ........T.................... TCCAGCACGACGTGCGCGAGGATGCTCGCCC 431219 29 100.0 32 ............................. ATGGCGGCGTACGCCTCGACCGTCCGGCCGTC 431158 29 89.7 0 ...T.........A..............A | ========== ====== ====== ====== ============================= ================================= ================== 31 29 95.8 32 GTCCTCCCCGCACGCGCGGGGGTCATCCC # Left flank : CGAGGCACCGCCGGCATCCTGTACCGCGTCGAACACCGGCCGCATCCGCGAATCCTTTTGCAGGCCGCTGCACCGCCGGCCCGCACCGACTACGGCATCCGCGTCACCGACCTCACCGGCGTCATAGCCAACCTGCACCCGGGTGGACGTGTTCACCTCCGAGTCGACATCAATGCGGTGCGTTGCCAGTCCCGCACCGGCCGACGTCTGCCCGTCCCCGACAGCGAGCTTCAGGGCTGGCTCACCGCGCGGCTCGAACCGGGCTTGCGCAACGTTGAGATCCTCGATGCCCCGGTGACTGTCGGCCGCGCCGGCAACCATCCGCTCCGCGTCGCCCACATCGCCGCTACAGCGACAGTGAACGATCCGCTTGCTCTCACGGAATTGATCAACAATGGCGTAGGACGCGGCAAAGCCTACGGTTGCGGCCTACTCACCGTCCTGCCGGCATTGTGAAGAAAATCGGCCGAGTGGATCTCTAGCGGCCCAGGTCAACAAGT # Right flank : TGCCGGGTGGCTGGCATGGCTGACCGCGAAGTATCTTCCCAAACTCTGCGCTACCGTCGAGCGGTTGCCACGCCTGGCGATCAGCATGCCGCTGGGCAGCAGGCCGTACGCATTACCCAAGCTGCCACGTTCCGCTGATGATCGCGACGTCGCTACGTCCGTCGGTCCGTTCCCATGTACGGTGGGACCCGCCTTGGACAGAGACCTGCGCGCTTCATCTCCGAGCAACAGCCATGACCTGCAGGTTTGCCTCCGTCAGAAGGTGCGCTCGGGGGCGCGTTTCGGGCTGTTGAAGATGGATCGCATCTGCGCCTGGCTTCGAACAGGCGCCGTCCCCCGTGATCGTTGACATGTCAGCTGGCTGCCCCATGCAGCAACAACGATCGCTCGCACTCGTTGGCCCGAGCACTTGTGCACCACCAGAACCACGAGCGGCACCATAGACGCAGGGACTCCCCCGCAGCCCGCGCCGGCGGTCAGGACGTACGAGACCCCAGTTC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACGCGCGGGGGTCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441589-440888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYJ01000007.1 Dactylosporangium aurantiacum strain NRRL B-8018 contig7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 441588 29 96.6 32 A............................ GACAACTGGCGGCACTTGCGCCGGGACAGCAA 441527 29 96.6 32 ..............G.............. ACGTTTCTGGCCGTGCTGATCGTGGGGACCGC 441466 27 89.7 32 ........T....--.............. GGGCGGTCGCCGTTGCTCATGCCGCGCCACGT 441407 29 96.6 32 .............T............... ATGGTCGTCGTCTCGATGTACCAGGTCCTGGC 441346 28 96.6 33 .................-........... ACAAACAACTACGCCGTCATCGCGATCCGGCCG 441285 29 89.7 33 ..T.C...A.................... TTGTTGTTCTCCAAGAGCAGGCTGTGGTATCAG ACG [441276] 441220 29 93.1 30 ..........T.................T GGCAGGACGAAAACGCCGTTGTCCGGGCCG 441161 29 89.7 32 CC...........C............... TGGATGGGCTTCAACCAGGACGCTCTCGCCAT 441100 29 100.0 30 ............................. TCGCCGTTGGACAGCCAGAACGGGGCGCCG 441041 29 86.2 32 ..T..T...............A......G TCCTGGTTGAACTGCACCTGCAGCGTGCTGTC A [441039] 440979 29 96.6 32 ............................G TCGACGCCGACGCTCATGCCGTCGAGTACGCC 440918 29 79.3 0 ........T......T..AC..C.....A | C,C [440896,440904] ========== ====== ====== ====== ============================= ================================= ================== 12 29 92.6 32 GTCCTCCCCGCACGCGCGGGGGTCATCCC # Left flank : ATGGTGTTGTCGTCGAGGTACCCAGCCCCGACGACAACGGAGGGGACGGCGGCATGCCGCCATCCCCTCCGCAATCCATCAACGCCCGCGTGGGCGCCTCGCCGGAAGCGTTGCAGCGCTCACGGCATGTCTAGCCTAGCTTGTCACCTGGTCTGTGCTGGTGCAGTGCAAACTGGTAGCTGGTAGATGTCGGCGTACGCCGGAGGCGCCTGGGCGACCCTTAGAAGAAAGGGCGCTATGCGTCAGTCGAACGACATGCCGTCCGAGGGCGGCATCCCGCTCCACCTCGTCGTGGTCATGATGCTCTGCGTCGCCATCGGTGTCGCGGTGTGGCACTGGCCGGATGCTCGGGGACCGGTTGCCGTTTCACTTCTCGCGTTCGGTGTTCTCTATCGCCTGATCCGGCGACGATAGTCATGCCGTTGTGACGCGGGTGTGACAACGCTTCGACCGTGTCTTGAGTTTCAGCAGGTAGAGGTGCCTGATCTCTACAGACCGTA # Right flank : CCACAGGCCCGCTGAGACGCCATCGGGTTCATGCCGCACCTGCCCGGTTCCTTAGAGCAGCTCGACCTGCTGCTTAGTAAATGTCGAACTGGCGTGGTGCCCGCCGGTCTCGTGTGCGCCATCTGCAATTTGGAGCATTCGGGACTAGGTGTTTCGGAATGCTTATTTCACTGTCATGGCGGTTGTACTCGAACCGCCTCGCTGCCGAATTTTGTCGGTGGTGCCCGGCATACTGTCCGACCGTGACCGCACCGTGGGCTAAGTGGGATGGGCGTAGCGCGCCGTACCCTGTGGCGGCGCATGCCTTGGATACCGCTGCGGTCGCGTTGGTGCTGTACCGCGATGTGCTCAGCGCCCCGGTCCAGGACCTTCTTGTCCGGGCGTTGCGCTGGTCTGCTGAGACTGCGGACCGGCGGTTCGCGTGGGTGGCTGGCGCTCATGATCTCGGGAAGGTCGGCCCTTTGCACCAAGGGCAGCTGCTTACCGTTGCTGCAGGCCGG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACGCGCGGGGGTCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3608-1551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYJ01000088.1 Dactylosporangium aurantiacum strain NRRL B-8018 contig88.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 3607 35 100.0 34 ................................... CCGGGACGAGCGGACGACGGAGGGGTACCTCCAG 3538 35 97.1 39 ......................T............ GAACTCCTGGGGGCGCTCATCGGTGCCATCCAGAACGAG 3464 35 94.3 36 .................C....T............ CGGTGCGCCTCGATGCCCTTCCGCGCGGCCGCCACG 3393 35 94.3 35 ...................T..T............ GCACGAACGAGCCCTGCCCGTTGTGGCCGGCGAAG 3323 35 97.1 41 ......................T............ TACTCGCCAACACCGACGCCCGGTCGCAGTACCGGATCACG 3247 35 97.1 35 ......................T............ GCTCACCGAACTCGGTGACCCGGGCGCGTGGCATG 3177 35 100.0 39 ................................... CACCGGCGGACGCAGGTCCGGCCCGCACCCCACGCCTCG 3103 35 94.3 35 ........T.............T............ GCTTGACGTAGATGACCCCGTCGAGGGTGCCCGCG 3033 35 97.1 36 ......................T............ GTGGCCTGCCGTCGCCCCTCGACGACACCGCGCTCG 2962 35 100.0 40 ................................... CTCAAGGCGATAGTCCTCCAGATCGACACGCATGCCCGGC 2887 35 100.0 37 ................................... GTCGGCCCACTTGGCGAGGCCTTCACCGTGGGTCCAC 2815 35 97.1 37 ..........C........................ CTGGACAACGATGGACGTGCAGGCCCGCCTGTCGTCC 2743 35 100.0 37 ................................... CGCCCTGGGCGTGCTCCCCCGCGAGCTGTCCTCGGCC 2671 35 100.0 36 ................................... TACGACCCGGCCACCGTGGGCTCAGCCATCGCCAAC 2600 34 94.3 34 ............T-..................... GCCGAGCACGGTGAGCGTGAGCCCTGGCGACCAC 2532 35 100.0 38 ................................... TATCCGCCGCGGTCGACGTCTCGGACGCAAGGACCTTC 2459 35 97.1 40 ..............................A.... CGTACGCGAGTGGGGAGAAAGCATGCCCATGGTGACGGGC 2384 35 97.1 39 .......................C........... CTGCGGATCATTCGCGCGCCGGGCCGCACCAGCGCGGAC 2310 35 100.0 39 ................................... GCGACCAAGATGCTCCGCGGCAAGGCGCCGCTCACCATC 2236 35 100.0 39 ................................... CACCGGCGGACGCAGGTCCGGCCCGCACCCCACGCCTCG 2162 35 97.1 37 ........T.......................... CGTGTCGTCGGGCGTGCGGCCGGGCGCGACCAGCGTG 2090 35 100.0 35 ................................... CGAGCAGCAGCCCCACGAACGGGTTCGTCGTGCCG 2020 35 100.0 39 ................................... ATGCAGTGCACCGGCCGGCCGAGCGCGGTCCGGTGCCAG 1946 35 100.0 39 ................................... ACGTATTCGCTCAACGCGTCCGGATTCTTGACCGACCTG 1872 35 100.0 34 ................................... CGACGCCGAGCTGCCGTTCGGTGTGCCCGTCTCG 1803 35 91.4 38 ....G..A.......A................... CACCACAGCGGCCTCTGCGCACGCTGCCAGCCAGGAGG 1730 35 94.3 36 .......A.......C................... GCGGTCGCGCTGACCGGCGTCGAGAGCGGCGCGCGG 1659 35 97.1 39 .......A........................... GTGATCCCGGCGACGATCCCGTCCCAGGTGCCCTTGATG 1585 35 94.3 0 .......A.................A......... | ========== ====== ====== ====== =================================== ========================================= ================== 29 35 97.6 37 CCTCAATGAAGGGCAGCTCCGTCGGGAGCTGCGAC # Left flank : GCAAGTTCATGTACTGCCTTTGAGGAACTACGCAATAGCAAGGAGAAGTCCACGTGTGATGCGTCGAGTCCGGGCCGGTCCGGCGGCGTCACACTGGTCGGCACGATCACCGTTACTGCGGACATTGGCGCCAGTTCTGGCGTAGGTAGCAAAAATCCCGCGTCATCCGCCTCCATCCGTACCCAGTAGCGAACATCCGAGCAACCACGGAGCAGCCAGACCGATCAGACCGGTCGTTTTTCCCACGTAGGGATCCAGTGCCTTCACGCCCTGGTAAAGCCGAGCGTTCGGTATCCGGGCATGCGGCGTGGGAGTGAGACGGCGAGGATAGGCGCTGCCGGGTCATGGTAGTCGTGGACCCCGGCGTCCTTGCCGGGCGCCGGTCGGATCACGCGGCCGGCGCACTGGACAAGCAGGCCGTCGTATGAGATTTGGCTGGCGAGGAAGAGGGTGTCGAGGGCGACTTGGTAACGACGATCTTGAGGCCGCACGCTTCGACG # Right flank : TGGGCTCAGATTCTACTGCCGGCGAGCAGCCCCGACGTAAGCCTATTGCGAAGGGTGGTTGCGACGCTGCCAACCAAGGCCGCTCAAATTGGCGTAACAGGTGACGCGTCCGGGGGACGTCGCTGGCAGGGTGGCATGCGACGGCTCCGCGCTCACGGCCGGGACGATGGAGGCTTCGCGCTAGAGAATGGCTGGGCCGTGATCCGTAATCGTGCGGCTTCGGCCGACCACGTCGAGTGTGCTGCGTTGATTCTCCCTCAACGACCCCAGGTCGCAGAAGAGCACCGAGTCGGTGGACGCGTCGATGAGGTTGCTGAGTTGCGTCCGGAGGCGAAGCAGCTTCGCGGGCCGGGCATCGACGATGAAGACGCTGTACTGTACGCGGTCGCCGTACGATTCGAGTTTGCTCGCGACTCTGGTCCGGCATGCGTCATCGGAGATGTCGTAGGCGATGAGGTAGCGTCGCACGTCGTCCAGGCTCATCGGATTCTGATGCCTTG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCAATGAAGGGCAGCTCCGTCGGGAGCTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //