Array 1 516996-516008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBZ010000001.1 Pseudomonas aeruginosa strain 163915 16-3915_ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 516995 28 100.0 32 ............................ ATCACCGCCGCCAGTCCCACCGTTTCCGTCTC 516935 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 516875 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 516815 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 516755 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 516695 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 516635 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 516575 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 516515 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 516455 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 516395 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 516335 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 516275 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 516215 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 516155 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 516095 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 516035 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9827-8422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBZ010000008.1 Pseudomonas aeruginosa strain 163915 16-3915_ctg_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9826 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9766 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9706 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9646 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9586 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9526 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9466 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9406 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9346 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9285 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9225 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9165 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9105 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9045 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8985 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8925 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8869 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8809 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8749 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8689 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8629 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8569 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8509 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8449 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1694-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBZ010000018.1 Pseudomonas aeruginosa strain 163915 16-3915_ctg_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1693 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1633 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1573 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1513 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1453 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1393 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1333 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1273 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1213 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1153 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1093 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1033 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 973 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 913 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 853 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 793 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 733 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 672 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 612 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 552 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 492 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 432 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 372 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 312 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 252 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 192 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //