Array 1 743799-742511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023497.1 Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 743798 36 100.0 31 .................................... GACGGCGGCGTTGAAGTTGATATCCCCTTCA 743731 36 100.0 29 .................................... CATATTCAACTTGTTTAACCAAAGCGGGG 743666 36 100.0 29 .................................... ATCAAGAAGAATATTTAAAAGAGAAAGGA 743601 36 100.0 30 .................................... TATCTAAAACTTTAATTGATAGTATAGATG 743535 36 100.0 30 .................................... TGGAACGTCGAGGATGGTATTACGACTTGT 743469 36 100.0 30 .................................... CAAGTTTTCTTTTCTACAAATGGTTCAAGC 743403 36 100.0 30 .................................... CATAGGTGTTAGCAATAGTGATCATGATTT 743337 36 100.0 30 .................................... ACTCTTGATCAGTTACTTCCCCTCGCATAA 743271 36 100.0 30 .................................... TGTACAAAGCGTTATATGACTGACCAGCGT 743205 36 100.0 30 .................................... TGTTTTAAATGCTTCTAAAGAAAGTGCTTT 743139 36 100.0 29 .................................... ATGAACTCAATATCAGTGATAAGCGATTT 743074 36 100.0 30 .................................... CAAGGTGAGCGTGTTTATCCGAACAAAAAG 743008 36 100.0 30 .................................... TCTTTTTCGATGTATGGTACTTCGAAGAAG 742942 36 100.0 30 .................................... ATTTCTTGAATGACATTTTCGACGGTAATG 742876 36 100.0 30 .................................... ACATTTGAAGCGCCCTACCCGTTTGGTGTA 742810 36 100.0 30 .................................... CCGTTATCTTCTAATTGTTTTCTATACTTC 742744 36 100.0 30 .................................... TATGATGTCCATGATTTGAGGGGTGTCGTG 742678 36 100.0 30 .................................... TTGTAGCATAACAACAAACTGTGCTCCTAA 742612 36 97.2 30 ...........................A........ AAAGCAGTATGAATGCAACAACAAAATCCT 742546 36 97.2 0 ...........................A........ | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.7 30 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCACCTAGACATCGATAAGGAGAAAATTTCTTCAGCATTATCGGCGTATCTATTTTCTTAACCAAAATTCAAGTTTATAATTGTGCTAGAG # Right flank : AAAGTAATATCAATACAAATCGTATGGCAAGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATAAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATCTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACTCAATTACTACACGTTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACCCCTTTAGGTATCGCGGTAGTTTCAGCAGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2160941-2161370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023497.1 Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2160941 36 100.0 29 .................................... TTTCCTGTATCATGAAACACACAAAACTT 2161006 36 100.0 30 .................................... TGTTAGAAAGCCGATGACATCCTCCGTAAT 2161072 36 97.2 30 ................T................... ATATCAAATGTTAGATTTAGGTAAGTCACA 2161138 36 100.0 30 .................................... TGAATTGGGCGTAAAAACATTTGATGCATC 2161204 36 100.0 30 .................................... CTTTGCTTTAATCAATACGGGTTTACCGCT 2161270 36 100.0 29 .................................... TAATCTCGATTTTCGCTTTGTTGTCACTA 2161335 36 86.1 0 .............................T.G.CCA | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.6 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGATGATTTAAATGCGATAGAGCAACGCAAATTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGCTGGTTTTGTTATTCCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAATAAATATCTGCAAACTCTAAATATGTTTAGTATTATTGTTACGAGCCATCCTTATTTTATTATAGAGTCTGATACATTAGCGCTTATTAAAACGAATGGAGAATCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAACAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : ATGGAGATTAACTTAACTATTTATCATGTTTGTATGAGTGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //