Array 1 216600-214129 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVG02000003.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0164 NODE_3_length_645424_cov_52.664064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216599 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 216538 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 216477 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 216416 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 216355 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 216294 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 216233 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 216172 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 216111 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 216050 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 215989 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 215928 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 215867 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 215806 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 215745 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 215684 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 215623 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 215562 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 215501 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 215440 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 215379 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 215318 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 215257 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 215196 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 215135 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 215074 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 215013 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 214951 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 214890 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 214829 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 214768 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 214707 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 214646 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 214585 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 214524 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 214463 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 214402 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 214341 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 214280 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 214219 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 214158 29 100.0 0 ............................. | A [214131] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236204-233145 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVG02000003.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0164 NODE_3_length_645424_cov_52.664064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 236203 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 236142 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 236081 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 236020 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 235959 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 235898 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 235837 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 235776 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 235715 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 235654 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 235593 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 235532 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 235471 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 235410 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 235349 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 235288 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 235227 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 235166 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 235105 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 235044 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 234983 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 234922 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 234819 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 234758 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 234697 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 234636 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 234575 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 234514 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 234453 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 234392 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 234331 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 234270 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 234209 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 234148 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 234087 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 234026 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 233965 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 233904 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 233843 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 233782 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 233721 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 233660 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 233599 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 233538 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 233477 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 233416 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 233355 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 233294 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 233233 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 233172 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //