Array 1 706181-707142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822026.1 Streptococcus thermophilus isolate STH_CIRM_967 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 706181 36 100.0 31 .................................... CAAATTTTATAGGCGCCTTTTCTTTTTTGAG 706248 36 100.0 30 .................................... CGACGATTGAAGCGCTTGATTACGCAATCT 706314 36 100.0 31 .................................... CAAATTTTATAGGCGCCTTTTCTTTTTTGAG 706381 36 100.0 30 .................................... CAGTTTCAAACGCTCCACCACCAATATTTG 706447 36 100.0 30 .................................... TATTCTGCGCTCAAAGCCTTGTCTGATCAT 706513 36 100.0 30 .................................... ATCTAATGATATTATACTATGACATTTAAA 706579 36 100.0 30 .................................... TGGCTATTACCACGGATGCCAGTAGAAGCT 706645 36 100.0 31 .................................... CAGCTAACAAAACGCTTAGAAAGATAGTTGG 706712 36 100.0 30 .................................... CTAAAGGTGACGACTATCGTTTCAAAGATA 706778 36 97.2 30 ...................................T GACATGGAACCACGATGTCGTATTATTCCC 706844 36 100.0 30 .................................... TTTACTACGGTCTTTCCTGCACGCTTAGCA 706910 36 100.0 29 .................................... CCTTTGAGATGTAGCATTAGTATCTGTCA 706975 36 100.0 30 .................................... TTGAAATATCTGACCGTGTTAAGGAATATT 707041 36 100.0 30 .................................... TCTGTGTTATTGACTTGTTTGTTGTAATTG 707107 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 921930-922181 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822026.1 Streptococcus thermophilus isolate STH_CIRM_967 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 921930 36 100.0 37 .................................... AAACTAGTTTTCATCAACTATGAAGGTTTCAAGTCCG 922003 36 100.0 35 .................................... CAATCCACAATCTAATGCGATACCCACGGTAATTA 922074 36 100.0 36 .................................... TGTCCGCTGGATATTTATCGCTTTAGTAATTTTCAT 922146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATTGAGGGTTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCATAAGATATGGG # Right flank : CTGATGATGCAAAAAGAAGTAGCGGACCGTATCTCAGCAGAACCAAATACCAAAGCTTACGGTTCACTTTCAATTGCGGTGCAATACTACATGACAGCAAAAATTGCTTTCATCGTGCCACGTACAGTCTTTGTGCCAGCGCCGAACGTTGATTCAGCCATCCTCAAGATGACCCGCCGTGAACAACCACTTGTTCAAGTTAAAGACGAAGATTTCTTCTTCCGCATTGCTAAAATCAGTTTTGTTCACCGTCGTAAAACCCTTTGGAACAACTTGACAAGTCACTTCGGGAAGTCAGAAGAGGTCAAGACCAAATTAGAAAAGGCTCTGGAAGCAGCTGGTATCAAGCCGTCCATTCGTGGAGAAGCTTTATCTATTGCCGATTTTGCAAGATTGGCGGATGCCTTAAAAGAAGTCGGATTATAATGAAGAGACCCCAGCCATTTATTGTGGTTGGGGTTTAAAAATCTTTTAATAGCTTGTCTTTGTAATAATTAAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //